Wall clock time and date at job start Tue Mar 31 2020 03:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99846 * 2 1 4 4 H 1.48504 * 109.47473 * 270.00392 * 3 2 1 5 5 H 1.48507 * 109.47400 * 30.00646 * 3 2 1 6 6 H 1.48503 * 109.46997 * 150.00315 * 3 2 1 7 7 C 1.38814 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00038 * 195.89026 * 7 2 1 9 9 N 1.36936 * 119.99577 * 15.89564 * 7 2 1 10 10 C 1.46925 * 120.63373 * 29.18246 * 9 7 2 11 11 C 1.53197 * 108.77275 * 126.37505 * 10 9 7 12 12 C 1.53033 * 109.31718 * 54.63126 * 11 10 9 13 13 N 1.46896 * 109.46392 * 178.62617 * 12 11 10 14 14 C 1.46894 * 111.00275 * 273.24714 * 13 12 11 15 15 H 1.09001 * 109.67437 * 34.13792 * 14 13 12 16 16 C 1.53330 * 109.67602 * 273.63260 * 14 13 12 17 17 C 1.52825 * 108.10498 * 176.17379 * 16 14 13 18 18 C 1.50741 * 111.73569 * 58.91386 * 17 16 14 19 19 H 1.09001 * 109.26403 * 186.91837 * 18 17 16 20 20 C 1.53900 * 113.00503 * 65.12394 * 18 17 16 21 21 N 1.48240 * 104.02908 * 198.45690 * 20 18 17 22 22 C 1.47588 * 108.55973 * 23.34092 * 21 20 18 23 23 C 1.53985 * 113.92076 * 308.63503 * 18 17 16 24 24 H 1.08998 * 112.18578 * 280.81212 * 23 18 17 25 25 C 1.52600 * 109.67604 * 154.67726 * 14 13 12 26 26 C 1.53040 * 109.54241 * 298.63772 * 12 11 10 27 27 C 1.46924 * 120.62590 * 209.16349 * 9 7 2 28 28 H 0.97003 * 120.00257 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.58918 * 6.58818 * 10 9 7 30 30 H 1.09004 * 109.58426 * 246.15411 * 10 9 7 31 31 H 1.09001 * 109.49168 * 294.67914 * 11 10 9 32 32 H 1.08996 * 109.49683 * 174.58811 * 11 10 9 33 33 H 1.09006 * 109.45818 * 58.65575 * 12 11 10 34 34 H 1.00906 * 110.99343 * 37.20098 * 13 12 11 35 35 H 1.08995 * 109.73265 * 295.82209 * 16 14 13 36 36 H 1.08999 * 109.73402 * 56.47387 * 16 14 13 37 37 H 1.09000 * 109.02581 * 179.49810 * 17 16 14 38 38 H 1.09003 * 109.02539 * 298.40805 * 17 16 14 39 39 H 1.09001 * 110.52071 * 317.09782 * 20 18 17 40 40 H 1.09007 * 110.51936 * 79.68754 * 20 18 17 41 41 H 1.00902 * 111.00113 * 145.60501 * 21 20 18 42 42 H 1.09005 * 109.97158 * 120.37178 * 22 21 20 43 43 H 1.09002 * 109.96571 * 241.59197 * 22 21 20 44 44 H 1.08995 * 109.16416 * 302.48392 * 25 14 13 45 45 H 1.08996 * 109.16057 * 61.68360 * 25 14 13 46 46 H 1.08994 * 109.50054 * 181.31201 * 26 12 11 47 47 H 1.09002 * 109.49439 * 301.41732 * 26 12 11 48 48 H 1.08997 * 109.58859 * 353.41468 * 27 9 7 49 49 H 1.09003 * 109.59095 * 113.84499 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0593 -1.2201 0.2555 9 7 1.3648 -2.3652 -0.3259 10 6 0.2206 -2.3538 -1.2474 11 6 0.4877 -3.3532 -2.3774 12 6 0.7970 -4.7262 -1.7763 13 7 1.0214 -5.6947 -2.8577 14 6 -0.2458 -6.2892 -3.3033 15 1 -1.0432 -5.5494 -3.2327 16 6 -0.5852 -7.4994 -2.4252 17 6 -1.9520 -8.0304 -2.8560 18 6 -1.9625 -8.4310 -4.3092 19 1 -2.9803 -8.6857 -4.6047 20 6 -1.0348 -9.6212 -4.6117 21 7 -0.8347 -9.5570 -6.0791 22 6 -1.0838 -8.1729 -6.5270 23 6 -1.4309 -7.3432 -5.2606 24 1 -2.1751 -6.5725 -5.4613 25 6 -0.1110 -6.7640 -4.7473 26 6 2.0531 -4.6331 -0.9069 27 6 1.8037 -3.6482 0.2397 28 1 -0.4851 0.8400 0.0004 29 1 0.0975 -1.3546 -1.6649 30 1 -0.6835 -2.6420 -0.7110 31 1 1.3385 -3.0148 -2.9687 32 1 -0.3934 -3.4254 -3.0150 33 1 -0.0443 -5.0529 -1.1650 34 1 1.5116 -5.2677 -3.6295 35 1 0.1695 -8.2744 -2.5589 36 1 -0.6204 -7.1966 -1.3787 37 1 -2.2044 -8.8980 -2.2463 38 1 -2.7009 -7.2545 -2.6970 39 1 -0.0841 -9.5066 -4.0910 40 1 -1.5129 -10.5595 -4.3300 41 1 0.0953 -9.8566 -6.3307 42 1 -0.1903 -7.7692 -7.0033 43 1 -1.9195 -8.1528 -7.2266 44 1 0.1785 -5.9216 -5.3754 45 1 0.6613 -7.5313 -4.8009 46 1 2.2861 -5.6162 -0.4979 47 1 2.8892 -4.2826 -1.5121 48 1 2.7252 -3.5030 0.8035 49 1 1.0287 -4.0419 0.8974 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592471078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:19 Heat of formation + Delta-G solvation = -11.357098 kcal Electronic energy + Delta-G solvation = -24842.446850 eV Core-core repulsion = 21609.612775 eV Total energy + Delta-G solvation = -3232.834074 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.216 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -41.25905 -39.55958 -37.18132 -35.16514 -33.73305 -32.42921 -31.56757 -31.05504 -29.20251 -27.90028 -26.30565 -24.16119 -23.81544 -23.30317 -22.44484 -21.44103 -20.83884 -19.57751 -18.76896 -17.16395 -16.95676 -16.89860 -16.44800 -16.12614 -15.42651 -15.37881 -15.27473 -14.95866 -14.77899 -14.34124 -14.15104 -13.95268 -13.72432 -13.43299 -13.27049 -13.09450 -12.86801 -12.66136 -12.62212 -12.58111 -12.49286 -12.30526 -12.13548 -11.96102 -11.93433 -11.78908 -11.44383 -11.35083 -11.24642 -11.00373 -10.93234 -10.58655 -9.34297 -9.27736 -8.68736 -7.89327 -5.36790 1.45186 1.46164 1.55479 2.49326 3.08396 3.26656 3.30180 3.53118 3.67120 3.75602 3.90024 3.95814 4.10164 4.16611 4.22526 4.23380 4.41422 4.44846 4.48351 4.51727 4.51796 4.61534 4.68267 4.69521 4.74831 4.82834 4.85464 4.93556 4.95861 4.99639 5.07817 5.09260 5.20394 5.22962 5.24815 5.32076 5.33618 5.37361 5.38134 5.47649 5.51584 5.62187 5.68501 5.90024 6.18675 6.37673 6.47323 6.52780 7.12863 7.83828 8.36378 9.16756 Molecular weight = 293.22amu Principal moments of inertia in cm(-1) A = 0.033774 B = 0.003118 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.851624 B = 8977.484843 C = 9168.477031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.184 3.816 11 C -0.150 4.150 12 C 0.110 3.890 13 N -0.676 5.676 14 C 0.088 3.912 15 H 0.030 0.970 16 C -0.100 4.100 17 C -0.104 4.104 18 C -0.087 4.087 19 H 0.074 0.926 20 C 0.052 3.948 21 N -0.693 5.693 22 C 0.051 3.949 23 C -0.102 4.102 24 H 0.087 0.913 25 C -0.103 4.103 26 C -0.103 4.103 27 C 0.140 3.860 28 H 0.250 0.750 29 H 0.049 0.951 30 H -0.008 1.008 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.340 0.660 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.344 0.656 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.052 0.948 48 H 0.054 0.946 49 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 -18.886 -11.513 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.394 4.394 8 H 0.084 0.916 9 N -0.334 5.334 10 C 0.057 3.943 11 C -0.190 4.190 12 C 0.000 4.000 13 N -0.306 5.306 14 C -0.022 4.022 15 H 0.048 0.952 16 C -0.138 4.138 17 C -0.143 4.143 18 C -0.106 4.106 19 H 0.092 0.908 20 C -0.076 4.076 21 N -0.322 5.322 22 C -0.079 4.079 23 C -0.122 4.122 24 H 0.105 0.895 25 C -0.141 4.141 26 C -0.142 4.142 27 C 0.015 3.985 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.010 0.990 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.159 0.841 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.160 0.840 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -2.506 -19.556 -11.259 22.704 hybrid contribution 0.486 2.555 0.104 2.603 sum -2.020 -17.001 -11.155 20.434 Atomic orbital electron populations 1.70184 1.06721 1.25842 1.55477 1.25858 0.96091 1.01612 1.01101 0.85249 0.78129 0.79390 0.77580 1.21169 1.22092 1.19217 1.19535 0.92515 0.85924 1.41446 0.91625 1.44318 1.35813 1.02805 1.50501 1.20451 0.87728 0.97133 0.88967 1.22638 1.00246 0.97571 0.98577 1.21255 0.97342 0.88778 0.92632 1.60722 1.21381 1.35603 1.12888 1.21496 0.90302 0.95539 0.94865 0.95151 1.21520 0.96985 0.96876 0.98413 1.20884 0.96979 1.01174 0.95214 1.21353 0.99919 0.94671 0.94685 0.90750 1.22749 0.98732 0.98389 0.87752 1.61995 1.34110 1.22758 1.13346 1.22905 1.01279 0.87337 0.96344 1.22384 0.96802 0.97542 0.95507 0.89473 1.21629 0.97444 1.00665 0.94333 1.21795 0.97008 0.98689 0.96755 1.21083 0.97217 0.86015 0.94225 0.94123 0.93232 0.98969 0.92965 0.92534 0.92238 0.84112 0.91248 0.93141 0.90634 0.92389 0.93294 0.90237 0.84006 0.92070 0.90983 0.92029 0.91470 0.90477 0.92922 0.92707 0.97072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.25 11.21 21.65 0.24 -56.01 16 2 C -0.05 -2.91 4.93 84.86 0.42 -2.49 16 3 Si 0.97 45.34 29.58 68.60 2.03 47.37 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.26 -14.80 9.58 84.03 0.80 -13.99 16 8 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 9 N -0.61 -31.37 2.99 -699.09 -2.09 -33.46 16 10 C 0.18 9.06 5.29 86.36 0.46 9.52 16 11 C -0.15 -5.64 5.31 30.67 0.16 -5.48 16 12 C 0.11 3.58 2.24 44.94 0.10 3.68 16 13 N -0.68 -17.54 6.07 -469.47 -2.85 -20.39 16 14 C 0.09 1.97 2.26 44.89 0.10 2.08 16 15 H 0.03 0.80 7.26 -2.39 -0.02 0.78 16 16 C -0.10 -2.08 5.33 30.65 0.16 -1.92 16 17 C -0.10 -1.82 5.37 29.80 0.16 -1.66 16 18 C -0.09 -1.42 2.81 -10.89 -0.03 -1.45 16 19 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 20 C 0.05 0.80 6.52 86.35 0.56 1.36 16 21 N -0.69 -10.64 7.41 -503.07 -3.73 -14.37 16 22 C 0.05 0.76 6.88 86.97 0.60 1.36 16 23 C -0.10 -1.69 3.60 -9.66 -0.03 -1.72 16 24 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 25 C -0.10 -1.87 3.93 30.46 0.12 -1.75 16 26 C -0.10 -3.53 5.69 30.67 0.17 -3.35 16 27 C 0.14 5.96 6.52 86.37 0.56 6.52 16 28 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.05 2.77 6.11 -2.39 -0.01 2.76 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.96 7.57 -2.39 -0.02 1.94 16 33 H 0.06 2.07 7.23 -2.38 -0.02 2.05 16 34 H 0.34 8.51 8.04 -89.69 -0.72 7.79 16 35 H 0.07 1.41 6.80 -2.39 -0.02 1.40 16 36 H 0.05 1.21 7.56 -2.39 -0.02 1.19 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 0.77 6.14 -2.39 -0.01 0.75 16 40 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.34 4.45 8.91 -89.69 -0.80 3.65 16 42 H 0.06 0.83 7.74 -2.38 -0.02 0.81 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.12 8.07 -2.39 -0.02 1.10 16 45 H 0.07 1.21 7.15 -2.39 -0.02 1.20 16 46 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 49 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -61.96 357.10 -2.67 -64.63 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -0.60 Total: 21.51 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 4.32 Total: -9.30 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -8.42 Total: -124.22 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -61.96 -2.67 -64.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592471078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.278 kcal (2) G-P(sol) polarization free energy of solvation -61.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds