Wall clock time and date at job start Tue Mar 31 2020 03:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99772 * 2 1 4 4 C 1.53001 * 109.47047 * 66.04689 * 3 2 1 5 5 C 1.53005 * 109.46892 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47005 * 179.97438 * 5 4 3 7 7 C 1.46894 * 111.00147 * 236.04760 * 2 1 3 8 8 C 1.50706 * 109.46975 * 293.95074 * 7 2 1 9 9 C 1.35355 * 126.74891 * 95.00406 * 8 7 2 10 10 N 1.35311 * 106.17302 * 180.02562 * 9 8 7 11 11 C 1.46500 * 125.86717 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47034 * 123.65680 * 11 10 9 13 13 C 1.50697 * 115.55068 * 295.08812 * 12 11 10 14 14 H 1.07994 * 120.00202 * 91.78386 * 13 12 11 15 15 C 1.37883 * 119.99923 * 271.78687 * 13 12 11 16 16 N 1.31519 * 120.00087 * 182.48995 * 15 13 12 17 17 Si 1.86798 * 120.00086 * 2.48238 * 15 13 12 18 18 H 1.48504 * 109.47210 * 275.11095 * 17 15 13 19 19 H 1.48501 * 109.47150 * 35.11018 * 17 15 13 20 20 H 1.48501 * 109.47273 * 155.10936 * 17 15 13 21 21 C 1.53001 * 117.51587 * 80.79092 * 12 11 10 22 22 C 1.53006 * 60.00181 * 107.47975 * 21 12 11 23 23 N 1.28714 * 108.26715 * 0.25572 * 10 9 8 24 24 N 1.28638 * 110.17251 * 359.56570 * 23 10 9 25 25 H 1.09004 * 109.47558 * 183.95413 * 1 2 3 26 26 H 1.08998 * 109.47650 * 303.95664 * 1 2 3 27 27 H 1.08997 * 109.47351 * 63.95465 * 1 2 3 28 28 H 1.09006 * 109.47075 * 186.04326 * 3 2 1 29 29 H 1.08996 * 109.47201 * 306.04342 * 3 2 1 30 30 H 1.09001 * 109.47225 * 299.99425 * 4 3 2 31 31 H 1.08996 * 109.47403 * 59.99777 * 4 3 2 32 32 H 1.08999 * 109.47285 * 299.99217 * 5 4 3 33 33 H 1.08994 * 109.47258 * 60.00261 * 5 4 3 34 34 H 1.00902 * 111.00017 * 56.04477 * 6 5 4 35 35 H 1.00903 * 111.00404 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47185 * 173.95537 * 7 2 1 37 37 H 1.08996 * 109.47607 * 53.94958 * 7 2 1 38 38 H 1.07999 * 126.91113 * 0.03777 * 9 8 7 39 39 H 1.09004 * 109.46983 * 3.66074 * 11 10 9 40 40 H 1.08997 * 109.47140 * 243.65912 * 11 10 9 41 41 H 0.96993 * 119.99825 * 179.97438 * 16 15 13 42 42 H 1.09001 * 117.49318 * 214.96769 * 21 12 11 43 43 H 1.08989 * 117.49920 * 359.97438 * 21 12 11 44 44 H 1.08999 * 117.49738 * 252.51663 * 22 21 12 45 45 H 1.09004 * 117.50194 * 107.48385 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0574 1.3183 5 6 2.1802 3.4857 1.3185 6 7 1.8302 4.1445 2.5840 7 6 1.9954 -0.7659 -1.1375 8 6 1.6370 -2.2204 -0.9728 9 6 0.5664 -2.8559 -1.5041 10 7 0.6497 -4.1424 -1.0933 11 6 -0.2965 -5.2114 -1.4221 12 6 0.4525 -6.3698 -2.0839 13 6 1.0751 -6.0618 -3.4212 14 1 2.0960 -5.7137 -3.4742 15 6 0.3412 -6.2242 -4.5771 16 7 0.8995 -6.0025 -5.7471 17 14 -1.4459 -6.7595 -4.4814 18 1 -1.5151 -8.2405 -4.3957 19 1 -2.0772 -6.1639 -3.2765 20 1 -2.1660 -6.2998 -5.6960 21 6 1.1919 -7.3481 -1.1688 22 6 -0.0977 -7.7813 -1.8690 23 7 1.7000 -4.2644 -0.3593 24 7 2.3138 -3.1373 -0.2724 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3634 0.5740 0.8524 27 1 -0.3634 0.4512 -0.9233 28 1 3.0797 1.3445 -0.1082 29 1 1.5611 1.9273 -0.8309 30 1 0.5471 2.0845 1.4265 31 1 2.0656 1.5016 2.1492 32 1 3.2645 3.4583 1.2106 33 1 1.7462 4.0418 0.4877 34 1 2.1659 3.6131 3.3733 35 1 2.1814 5.0901 2.6086 36 1 3.0797 -0.6610 -1.1755 37 1 1.5611 -0.3873 -2.0628 38 1 -0.1999 -2.4231 -2.1301 39 1 -1.0529 -4.8290 -2.1076 40 1 -0.7778 -5.5638 -0.5098 41 1 0.3833 -6.1171 -6.5603 42 1 2.1287 -7.7688 -1.5342 43 1 1.1452 -7.1662 -0.0952 44 1 -0.9930 -7.8845 -1.2560 45 1 -0.0093 -8.4870 -2.6951 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594651788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:24 Heat of formation + Delta-G solvation = 127.534613 kcal Electronic energy + Delta-G solvation = -23517.116956 eV Core-core repulsion = 20186.765335 eV Total energy + Delta-G solvation = -3330.351621 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.56625 -38.08616 -37.29034 -35.46960 -33.35106 -32.24057 -31.62215 -29.85086 -27.79336 -27.11692 -25.63144 -25.40390 -22.61426 -21.77944 -21.50221 -20.98127 -20.51074 -19.11206 -16.97512 -16.42888 -15.97690 -15.91964 -15.66590 -15.41348 -15.07358 -14.85044 -14.41861 -14.25849 -13.82846 -13.67254 -13.16141 -12.89437 -12.72087 -12.56695 -12.20020 -12.04447 -11.78861 -11.49986 -11.37476 -11.26289 -11.01758 -10.86166 -10.79542 -10.64016 -10.43227 -10.17149 -9.94254 -9.32315 -9.14128 -9.05329 -8.74784 -8.73295 -8.63253 -8.27184 -6.25851 -4.30896 2.29255 3.01050 3.09274 3.12316 3.22878 3.24237 3.96027 4.23473 4.33114 4.72881 4.78125 4.80366 4.92261 4.98243 5.05630 5.17917 5.23213 5.33572 5.39457 5.42684 5.45881 5.52324 5.54471 5.61044 5.71779 5.72987 5.90058 5.94015 5.94741 6.00781 6.08226 6.11764 6.37404 6.50937 6.59427 6.69680 6.76038 6.82382 7.02496 7.03160 7.06559 7.08152 7.31446 7.54136 8.34961 8.79918 9.23773 9.34615 10.85920 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.027527 B = 0.003119 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.950738 B = 8975.127488 C = 9302.193162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.535 5.535 3 C 0.058 3.942 4 C -0.115 4.115 5 C 0.061 3.939 6 N -0.854 5.854 7 C 0.148 3.852 8 C -0.028 4.028 9 C -0.040 4.040 10 N -0.252 5.252 11 C 0.142 3.858 12 C -0.020 4.020 13 C -0.487 4.487 14 H 0.076 0.924 15 C 0.078 3.922 16 N -0.891 5.891 17 Si 0.883 3.117 18 H -0.273 1.273 19 H -0.266 1.266 20 H -0.293 1.293 21 C -0.158 4.158 22 C -0.193 4.193 23 N -0.075 5.075 24 N -0.271 5.271 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.341 0.659 35 H 0.340 0.660 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.176 0.824 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.267 0.733 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 14.475 10.797 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.259 5.259 3 C -0.071 4.071 4 C -0.154 4.154 5 C -0.070 4.070 6 N -0.383 5.383 7 C 0.019 3.981 8 C -0.168 4.168 9 C -0.193 4.193 10 N -0.044 5.044 11 C 0.021 3.979 12 C -0.022 4.022 13 C -0.524 4.524 14 H 0.095 0.905 15 C -0.125 4.125 16 N -0.527 5.527 17 Si 0.711 3.289 18 H -0.198 1.198 19 H -0.191 1.191 20 H -0.219 1.219 21 C -0.195 4.195 22 C -0.231 4.231 23 N -0.054 5.054 24 N -0.137 5.137 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.194 0.806 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.634 13.131 11.604 17.720 hybrid contribution -1.054 0.688 -1.599 2.035 sum -3.688 13.819 10.005 17.455 Atomic orbital electron populations 1.22449 0.87503 1.02493 1.00234 1.61868 1.07982 1.12662 1.43404 1.22045 1.00270 0.88142 0.96629 1.21575 1.02017 0.93808 0.97952 1.21763 0.97559 0.95244 0.92431 1.58695 1.68508 1.06616 1.04482 1.20121 1.00692 0.86199 0.91082 1.21397 0.95458 0.96917 1.02995 1.23205 1.03812 0.85510 1.06750 1.47180 1.18266 1.08315 1.30609 1.22118 0.88986 0.87138 0.99614 1.19494 0.99650 0.85799 0.97275 1.20188 1.00305 1.45708 0.86213 0.90550 1.25037 0.98163 0.94256 0.95082 1.69892 1.36988 1.48177 0.97659 0.86846 0.85079 0.79748 0.77237 1.19831 1.19063 1.21942 1.22775 0.95510 1.04634 0.96627 1.23046 0.97069 0.99705 1.03323 1.78223 0.96177 1.18283 1.12760 1.74961 1.23747 0.95712 1.19283 0.91282 0.91347 0.95640 0.90694 0.94800 0.91078 0.91182 0.95445 0.91208 0.84638 0.84764 0.89263 0.93223 0.80629 0.88297 0.90515 0.92325 0.89265 0.90230 0.90644 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.13 60.06 0.55 0.79 16 2 N -0.53 -6.69 4.75 -244.38 -1.16 -7.85 16 3 C 0.06 0.57 4.96 -3.82 -0.02 0.55 16 4 C -0.12 -1.04 5.41 -26.73 -0.14 -1.18 16 5 C 0.06 0.47 6.79 -3.82 -0.03 0.44 16 6 N -0.85 -6.13 9.62 -10.37 -0.10 -6.23 16 7 C 0.15 2.06 5.53 -4.98 -0.03 2.03 16 8 C -0.03 -0.50 5.97 -82.78 -0.49 -0.99 16 9 C -0.04 -0.70 10.52 -17.05 -0.18 -0.88 16 10 N -0.25 -5.01 3.33 -61.26 -0.20 -5.21 16 11 C 0.14 2.71 6.00 -4.04 -0.02 2.69 16 12 C -0.02 -0.45 0.88 -155.66 -0.14 -0.58 16 13 C -0.49 -13.01 9.33 -34.44 -0.32 -13.34 16 14 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 15 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 16 N -0.89 -26.02 13.96 55.43 0.77 -25.24 16 17 Si 0.88 19.97 24.85 -169.99 -4.22 15.75 16 18 H -0.27 -6.09 6.98 56.52 0.39 -5.69 16 19 H -0.27 -5.42 5.87 56.52 0.33 -5.09 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.16 -3.19 9.86 -26.73 -0.26 -3.45 16 22 C -0.19 -3.81 7.62 -26.72 -0.20 -4.02 16 23 N -0.07 -1.61 12.87 60.35 0.78 -0.83 16 24 N -0.27 -5.65 12.41 33.29 0.41 -5.24 16 25 H 0.07 0.88 6.56 -51.93 -0.34 0.54 16 26 H 0.07 0.71 6.30 -51.93 -0.33 0.38 16 27 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.71 7.93 -51.93 -0.41 0.30 16 29 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 30 H 0.07 0.69 6.47 -51.93 -0.34 0.36 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.34 2.18 8.99 -39.29 -0.35 1.83 16 35 H 0.34 1.86 9.08 -39.29 -0.36 1.50 16 36 H 0.09 1.22 7.93 -51.93 -0.41 0.81 16 37 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.18 2.56 8.06 -52.49 -0.42 2.13 16 39 H 0.10 1.81 6.55 -51.93 -0.34 1.47 16 40 H 0.08 1.27 8.09 -51.93 -0.42 0.84 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 43 H 0.08 1.48 8.14 -51.94 -0.42 1.05 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.09 1.96 7.11 -51.93 -0.37 1.59 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -31.17 361.87 -7.19 -38.36 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -7.53 Total: 6.98 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -1.39 Total: -15.93 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.50 Total: -50.61 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.22 Total: 15.75 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.17 -7.19 -38.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.892 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds