Wall clock time and date at job start Tue Mar 31 2020 03:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 110.99772 * 2 1 4 4 C 1.53001 * 109.47047 * 66.04689 * 3 2 1 5 5 C 1.53005 * 109.46892 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47005 * 179.97438 * 5 4 3 7 7 C 1.46894 * 111.00147 * 236.04760 * 2 1 3 8 8 C 1.50706 * 109.46975 * 293.95074 * 7 2 1 9 9 C 1.35355 * 126.74891 * 95.00406 * 8 7 2 10 10 N 1.35311 * 106.17302 * 180.02562 * 9 8 7 11 11 C 1.46500 * 125.86717 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47034 * 123.65680 * 11 10 9 13 13 C 1.50697 * 115.55068 * 295.08812 * 12 11 10 14 14 H 1.07994 * 120.00202 * 91.78386 * 13 12 11 15 15 C 1.37883 * 119.99923 * 271.78687 * 13 12 11 16 16 N 1.31519 * 120.00087 * 182.48995 * 15 13 12 17 17 Si 1.86798 * 120.00086 * 2.48238 * 15 13 12 18 18 H 1.48504 * 109.47210 * 275.11095 * 17 15 13 19 19 H 1.48501 * 109.47150 * 35.11018 * 17 15 13 20 20 H 1.48501 * 109.47273 * 155.10936 * 17 15 13 21 21 C 1.53001 * 117.51587 * 80.79092 * 12 11 10 22 22 C 1.53006 * 60.00181 * 107.47975 * 21 12 11 23 23 N 1.28714 * 108.26715 * 0.25572 * 10 9 8 24 24 N 1.28638 * 110.17251 * 359.56570 * 23 10 9 25 25 H 1.09004 * 109.47558 * 183.95413 * 1 2 3 26 26 H 1.08998 * 109.47650 * 303.95664 * 1 2 3 27 27 H 1.08997 * 109.47351 * 63.95465 * 1 2 3 28 28 H 1.09006 * 109.47075 * 186.04326 * 3 2 1 29 29 H 1.08996 * 109.47201 * 306.04342 * 3 2 1 30 30 H 1.09001 * 109.47225 * 299.99425 * 4 3 2 31 31 H 1.08996 * 109.47403 * 59.99777 * 4 3 2 32 32 H 1.08999 * 109.47285 * 299.99217 * 5 4 3 33 33 H 1.08994 * 109.47258 * 60.00261 * 5 4 3 34 34 H 1.00902 * 111.00017 * 56.04477 * 6 5 4 35 35 H 1.00903 * 111.00404 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47185 * 173.95537 * 7 2 1 37 37 H 1.08996 * 109.47607 * 53.94958 * 7 2 1 38 38 H 1.07999 * 126.91113 * 0.03777 * 9 8 7 39 39 H 1.09004 * 109.46983 * 3.66074 * 11 10 9 40 40 H 1.08997 * 109.47140 * 243.65912 * 11 10 9 41 41 H 0.96993 * 119.99825 * 179.97438 * 16 15 13 42 42 H 1.09001 * 117.49318 * 214.96769 * 21 12 11 43 43 H 1.08989 * 117.49920 * 359.97438 * 21 12 11 44 44 H 1.08999 * 117.49738 * 252.51663 * 22 21 12 45 45 H 1.09004 * 117.50194 * 107.48385 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0574 1.3183 5 6 2.1802 3.4857 1.3185 6 7 1.8302 4.1445 2.5840 7 6 1.9954 -0.7659 -1.1375 8 6 1.6370 -2.2204 -0.9728 9 6 0.5664 -2.8559 -1.5041 10 7 0.6497 -4.1424 -1.0933 11 6 -0.2965 -5.2114 -1.4221 12 6 0.4525 -6.3698 -2.0839 13 6 1.0751 -6.0618 -3.4212 14 1 2.0960 -5.7137 -3.4742 15 6 0.3412 -6.2242 -4.5771 16 7 0.8995 -6.0025 -5.7471 17 14 -1.4459 -6.7595 -4.4814 18 1 -1.5151 -8.2405 -4.3957 19 1 -2.0772 -6.1639 -3.2765 20 1 -2.1660 -6.2998 -5.6960 21 6 1.1919 -7.3481 -1.1688 22 6 -0.0977 -7.7813 -1.8690 23 7 1.7000 -4.2644 -0.3593 24 7 2.3138 -3.1373 -0.2724 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3634 0.5740 0.8524 27 1 -0.3634 0.4512 -0.9233 28 1 3.0797 1.3445 -0.1082 29 1 1.5611 1.9273 -0.8309 30 1 0.5471 2.0845 1.4265 31 1 2.0656 1.5016 2.1492 32 1 3.2645 3.4583 1.2106 33 1 1.7462 4.0418 0.4877 34 1 2.1659 3.6131 3.3733 35 1 2.1814 5.0901 2.6086 36 1 3.0797 -0.6610 -1.1755 37 1 1.5611 -0.3873 -2.0628 38 1 -0.1999 -2.4231 -2.1301 39 1 -1.0529 -4.8290 -2.1076 40 1 -0.7778 -5.5638 -0.5098 41 1 0.3833 -6.1171 -6.5603 42 1 2.1287 -7.7688 -1.5342 43 1 1.1452 -7.1662 -0.0952 44 1 -0.9930 -7.8845 -1.2560 45 1 -0.0093 -8.4870 -2.6951 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594651788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:23 Heat of formation + Delta-G solvation = 103.096096 kcal Electronic energy + Delta-G solvation = -23518.176689 eV Core-core repulsion = 20186.765335 eV Total energy + Delta-G solvation = -3331.411355 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.02605 -39.13330 -38.78629 -36.19127 -34.83022 -34.26348 -32.76086 -30.79820 -29.16848 -28.35664 -27.52023 -26.36585 -23.54288 -23.32921 -23.00531 -21.97446 -21.66416 -20.81671 -18.66531 -17.62748 -17.35549 -16.93647 -16.87679 -16.47323 -16.44212 -15.90889 -15.48353 -15.38673 -15.32104 -14.81740 -14.56463 -14.53179 -14.10380 -13.60182 -13.31295 -13.12678 -12.97465 -12.70606 -12.66732 -12.50800 -12.27354 -12.16473 -12.12485 -12.08252 -11.77857 -11.64481 -11.54187 -11.02586 -10.83402 -10.62327 -10.45058 -10.03431 -9.60013 -9.22392 -8.32814 -6.44627 0.85499 1.36429 1.39483 1.50233 1.63184 1.69141 2.34232 2.98520 3.04133 3.16611 3.51000 3.70806 3.83931 3.92051 4.05578 4.08628 4.15674 4.25326 4.27223 4.29609 4.33851 4.46950 4.51101 4.55414 4.61722 4.67956 4.73780 4.83645 4.83936 4.86924 4.98784 5.05944 5.12901 5.19371 5.25002 5.32898 5.36528 5.43636 5.61601 5.86226 6.07554 6.15822 6.24367 6.26870 6.60411 6.63970 7.25703 7.74446 8.83462 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.027527 B = 0.003119 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.950738 B = 8975.127488 C = 9302.193162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.060 3.940 4 C -0.106 4.106 5 C 0.065 3.935 6 N -0.862 5.862 7 C 0.151 3.849 8 C -0.028 4.028 9 C -0.043 4.043 10 N -0.259 5.259 11 C 0.142 3.858 12 C -0.042 4.042 13 C -0.488 4.488 14 H 0.008 0.992 15 C 0.020 3.980 16 N -0.949 5.949 17 Si 0.948 3.052 18 H -0.264 1.264 19 H -0.219 1.219 20 H -0.299 1.299 21 C -0.158 4.158 22 C -0.172 4.172 23 N -0.108 5.108 24 N -0.301 5.301 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.345 0.655 35 H 0.350 0.650 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.207 0.793 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.267 0.733 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 15.240 12.175 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.274 5.274 3 C -0.068 4.068 4 C -0.145 4.145 5 C -0.066 4.066 6 N -0.393 5.393 7 C 0.022 3.978 8 C -0.169 4.169 9 C -0.196 4.196 10 N -0.051 5.051 11 C 0.022 3.978 12 C -0.044 4.044 13 C -0.525 4.525 14 H 0.026 0.974 15 C -0.178 4.178 16 N -0.588 5.588 17 Si 0.771 3.229 18 H -0.189 1.189 19 H -0.142 1.142 20 H -0.226 1.226 21 C -0.195 4.195 22 C -0.210 4.210 23 N -0.087 5.087 24 N -0.167 5.167 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.224 0.776 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.138 0.862 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.546 13.902 13.034 19.848 hybrid contribution 0.023 0.506 -2.042 2.104 sum -5.523 14.409 10.993 18.946 Atomic orbital electron populations 1.22426 0.86809 1.01797 1.01335 1.61819 1.08766 1.14053 1.42800 1.22082 1.00392 0.86874 0.97477 1.21474 1.01510 0.94491 0.96995 1.21695 0.97798 0.94307 0.92805 1.58689 1.68813 1.07346 1.04464 1.20160 1.00807 0.84407 0.92450 1.22017 0.94891 0.98190 1.01760 1.23790 1.04430 0.84884 1.06496 1.47334 1.18072 1.09190 1.30472 1.22174 0.88519 0.85819 1.01272 1.19381 1.01548 0.88027 0.95403 1.20171 0.97672 1.45226 0.89436 0.97357 1.25999 1.03654 0.94044 0.94064 1.70077 1.39391 1.50527 0.98794 0.85788 0.78424 0.79873 0.78810 1.18889 1.14169 1.22626 1.22731 0.95214 1.04065 0.97525 1.23123 0.98092 0.96907 1.02868 1.78154 0.97313 1.18901 1.14356 1.74901 1.24732 0.96408 1.20650 0.92805 0.90443 0.94315 0.90519 0.93603 0.91660 0.92399 0.94931 0.90855 0.84238 0.83648 0.89527 0.91508 0.77613 0.87043 0.86919 0.92368 0.91645 0.88105 0.86190 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.13 127.69 1.17 1.67 16 2 N -0.55 -12.99 4.75 -927.07 -4.41 -17.40 16 3 C 0.06 1.08 4.96 86.30 0.43 1.50 16 4 C -0.11 -1.76 5.41 30.60 0.17 -1.60 16 5 C 0.07 0.88 6.79 86.30 0.59 1.47 16 6 N -0.86 -11.06 9.62 -186.72 -1.80 -12.85 16 7 C 0.15 4.05 5.53 85.56 0.47 4.52 16 8 C -0.03 -0.99 5.97 41.60 0.25 -0.74 16 9 C -0.04 -1.46 10.52 83.49 0.88 -0.58 16 10 N -0.26 -9.97 3.33 -347.73 -1.16 -11.13 16 11 C 0.14 4.99 6.00 86.38 0.52 5.51 16 12 C -0.04 -1.77 0.88 -52.93 -0.05 -1.82 16 13 C -0.49 -26.80 9.33 25.60 0.24 -26.56 16 14 H 0.01 0.54 8.06 -2.91 -0.02 0.52 16 15 C 0.02 1.11 5.47 84.66 0.46 1.57 16 16 N -0.95 -57.53 13.96 21.45 0.30 -57.23 16 17 Si 0.95 39.60 24.85 68.60 1.70 41.31 16 18 H -0.26 -10.64 6.98 99.48 0.69 -9.95 16 19 H -0.22 -7.49 5.87 99.48 0.58 -6.90 16 20 H -0.30 -12.78 7.11 99.48 0.71 -12.08 16 21 C -0.16 -6.20 9.86 30.60 0.30 -5.89 16 22 C -0.17 -6.20 7.62 30.60 0.23 -5.97 16 23 N -0.11 -4.67 12.87 37.02 0.48 -4.19 16 24 N -0.30 -12.72 12.41 -48.60 -0.60 -13.32 16 25 H 0.05 1.29 6.56 -2.39 -0.02 1.27 16 26 H 0.08 1.46 6.30 -2.39 -0.02 1.45 16 27 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 1.35 7.93 -2.38 -0.02 1.33 16 29 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 30 H 0.06 1.16 6.47 -2.39 -0.02 1.15 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.34 3.97 8.99 -89.69 -0.81 3.16 16 35 H 0.35 3.26 9.08 -89.69 -0.81 2.45 16 36 H 0.09 2.34 7.93 -2.39 -0.02 2.32 16 37 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 38 H 0.21 5.48 8.06 -2.91 -0.02 5.46 16 39 H 0.11 3.58 6.55 -2.38 -0.02 3.57 16 40 H 0.11 3.16 8.09 -2.39 -0.02 3.14 16 41 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 43 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 44 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.08 3.12 7.11 -2.39 -0.02 3.10 16 Total: -1.00 -71.89 361.87 -0.59 -72.48 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -0.76 Total: 29.27 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 5.65 Total: -26.92 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -7.19 Total: -116.13 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 1.70 Total: 41.31 kcal Total: -71.89 -0.59 -72.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.578 kcal (2) G-P(sol) polarization free energy of solvation -71.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds