Wall clock time and date at job start Tue Mar 31 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47045 * 2 1 4 4 C 1.50697 * 109.46826 * 120.00040 * 2 1 3 5 5 N 1.30297 * 126.34863 * 299.97178 * 4 2 1 6 6 N 1.28525 * 110.05410 * 180.02562 * 5 4 2 7 7 C 1.31223 * 109.86274 * 0.02562 * 6 5 4 8 8 N 1.38575 * 126.47394 * 179.97438 * 7 6 5 9 9 C 1.46959 * 111.00036 * 0.02562 * 8 7 6 10 10 C 1.53058 * 109.36419 * 183.18916 * 9 8 7 11 11 N 1.46955 * 109.36051 * 301.59955 * 10 9 8 12 12 C 1.46906 * 110.99744 * 183.18754 * 11 10 9 13 13 C 1.50703 * 109.47109 * 169.99905 * 12 11 10 14 14 H 1.08005 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99989 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99580 * 17 15 13 21 21 C 1.46959 * 110.88319 * 59.32174 * 11 10 9 22 22 C 1.46959 * 110.99990 * 123.82556 * 8 7 6 23 23 N 1.36446 * 107.04956 * 0.22812 * 7 6 5 24 24 C 1.46502 * 127.13680 * 179.77165 * 23 7 6 25 25 H 1.08997 * 109.46817 * 299.99956 * 1 2 3 26 26 H 1.09001 * 109.46916 * 60.00252 * 1 2 3 27 27 H 1.09001 * 109.46966 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47079 * 239.99579 * 2 1 3 29 29 H 1.09001 * 109.47089 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47058 * 299.99661 * 3 2 1 31 31 H 1.09000 * 109.47525 * 59.99853 * 3 2 1 32 32 H 1.08995 * 109.48972 * 63.22090 * 9 8 7 33 33 H 1.08998 * 109.48999 * 303.15491 * 9 8 7 34 34 H 1.08994 * 109.48935 * 181.63483 * 10 9 8 35 35 H 1.08999 * 109.48934 * 61.56553 * 10 9 8 36 36 H 1.08992 * 109.47459 * 289.99824 * 12 11 10 37 37 H 1.09004 * 109.47040 * 49.99975 * 12 11 10 38 38 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 39 39 H 1.08995 * 109.48972 * 60.64434 * 21 11 10 40 40 H 1.08998 * 109.48999 * 180.71033 * 21 11 10 41 41 H 1.08999 * 109.48803 * 296.77756 * 22 8 7 42 42 H 1.09000 * 109.48812 * 56.82393 * 22 8 7 43 43 H 1.09011 * 109.46949 * 90.02132 * 24 23 7 44 44 H 1.09001 * 109.47608 * 210.02229 * 24 23 7 45 45 H 1.09005 * 109.47281 * 330.02815 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7954 -0.3745 2.4669 6 7 2.3769 -1.1963 3.2660 7 6 3.0217 -2.1078 2.5765 8 7 3.7651 -3.1576 3.0918 9 6 3.7528 -3.1402 4.5613 10 6 4.6472 -4.2643 5.0896 11 7 4.1633 -5.5537 4.5769 12 6 4.9514 -6.6666 5.1232 13 6 4.2831 -7.9724 4.7777 14 1 3.3650 -7.9753 4.2089 15 6 4.8437 -9.1634 5.1878 16 7 5.9620 -9.1599 5.8801 17 14 4.0158 -10.7821 4.7590 18 1 4.5336 -11.2732 3.4568 19 1 4.3074 -11.7827 5.8168 20 1 2.5482 -10.5770 4.6626 21 6 4.1756 -5.5710 3.1075 22 6 3.2812 -4.4470 2.5792 23 7 2.8267 -1.8232 1.2564 24 6 3.3555 -2.5592 0.1054 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 2.7336 -3.2882 4.9182 33 1 4.1271 -2.1802 4.9168 34 1 4.6167 -4.2716 6.1791 35 1 5.6718 -4.1014 4.7552 36 1 5.9534 -6.6469 4.6949 37 1 5.0173 -6.5677 6.2067 38 1 6.3566 -9.9978 6.1683 39 1 5.1948 -5.4230 2.7506 40 1 3.8013 -6.5310 2.7520 41 1 2.2567 -4.6099 2.9136 42 1 3.3114 -4.4396 1.4896 43 1 2.6486 -3.3366 -0.1848 44 1 3.5031 -1.8728 -0.7283 45 1 4.3083 -3.0162 0.3729 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601860230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:07 Heat of formation + Delta-G solvation = 91.236170 kcal Electronic energy + Delta-G solvation = -24127.920029 eV Core-core repulsion = 20795.994390 eV Total energy + Delta-G solvation = -3331.925640 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.00385 -38.97216 -36.07047 -35.43870 -34.51070 -32.51899 -30.69785 -29.49729 -27.94618 -27.46617 -27.30448 -25.10445 -23.96680 -22.82595 -21.90232 -21.12684 -20.03069 -19.26593 -17.38053 -16.46930 -16.45537 -16.30927 -15.43576 -14.92922 -14.55893 -14.46056 -14.36373 -14.25104 -13.72175 -13.61548 -13.44883 -13.16119 -13.05963 -12.43459 -12.21176 -12.02088 -11.90002 -11.56607 -11.41227 -11.38798 -11.34359 -11.03751 -10.88605 -10.84345 -10.64127 -10.49733 -10.35430 -10.16846 -9.85745 -9.71786 -9.23576 -8.49268 -8.12013 -7.35789 -6.07899 -4.09946 1.75246 2.18310 2.87622 3.27457 3.34524 3.38377 3.71415 4.08198 4.36561 4.37173 4.48318 4.74793 4.76230 4.83431 4.91394 4.95731 5.10575 5.15923 5.27700 5.33627 5.34190 5.36219 5.54392 5.54715 5.60463 5.61975 5.66185 5.74018 5.81006 5.93330 5.96175 6.03102 6.12262 6.33232 6.42390 6.46215 6.55794 6.79162 7.21472 7.22688 7.27345 7.72283 7.99584 8.10090 8.45647 8.83028 8.97119 9.54628 11.02892 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.031771 B = 0.003152 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.107057 B = 8881.653603 C = 9307.042113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.000 4.000 3 C -0.141 4.141 4 C 0.168 3.832 5 N -0.278 5.278 6 N -0.326 5.326 7 C 0.371 3.629 8 N -0.453 5.453 9 C 0.079 3.921 10 C 0.054 3.946 11 N -0.539 5.539 12 C 0.194 3.806 13 C -0.510 4.510 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.069 3.931 22 C 0.055 3.945 23 N -0.486 5.486 24 C 0.074 3.926 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.034 0.966 36 H -0.007 1.007 37 H 0.033 0.967 38 H 0.262 0.738 39 H 0.033 0.967 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 16.461 -14.946 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 C -0.199 4.199 4 C -0.100 4.100 5 N -0.116 5.116 6 N -0.171 5.171 7 C 0.015 3.985 8 N -0.177 5.177 9 C -0.048 4.048 10 C -0.075 4.075 11 N -0.264 5.264 12 C 0.069 3.931 13 C -0.549 4.549 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.060 4.060 22 C -0.072 4.072 23 N -0.182 5.182 24 C -0.069 4.069 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.011 0.989 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.468 17.036 -13.632 22.758 hybrid contribution 0.512 -1.807 -1.341 2.307 sum -5.956 15.230 -14.973 22.172 Atomic orbital electron populations 1.21802 0.92770 1.02379 1.02955 1.19505 0.96727 0.95550 0.90307 1.21808 1.01097 0.94062 1.02967 1.24626 0.98018 0.89596 0.97739 1.73873 1.19025 1.21054 0.97680 1.74660 1.12555 1.05301 1.24559 1.22852 0.96526 0.98026 0.81139 1.58938 1.46666 1.00592 1.11508 1.22182 1.01139 0.99849 0.81608 1.22168 0.95867 0.89391 1.00051 1.62321 1.55826 1.02604 1.05644 1.19720 0.90826 0.87115 0.95422 1.21133 1.09001 0.90006 1.34726 0.91921 1.24988 0.95017 0.99327 0.95209 1.69955 1.19053 1.26997 1.37640 0.86505 0.79853 0.83147 0.77965 1.20745 1.21204 1.19771 1.21999 0.97165 0.96942 0.89869 1.22564 0.99119 0.86484 0.99045 1.46025 1.41022 1.24246 1.06890 1.22135 1.01040 0.97056 0.86717 0.91186 0.91586 0.92641 0.89962 0.92680 0.91589 0.91182 0.92105 0.89598 0.89863 0.94809 0.98893 0.94916 0.92847 0.94883 0.88686 0.92738 0.90772 0.90200 0.89276 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.18 37.16 0.34 -0.74 16 2 C 0.00 0.00 3.29 -91.77 -0.30 -0.30 16 3 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16 4 C 0.17 2.11 6.58 -154.01 -1.01 1.10 16 5 N -0.28 -4.46 12.18 32.99 0.40 -4.06 16 6 N -0.33 -5.73 11.30 30.31 0.34 -5.38 16 7 C 0.37 5.80 7.22 -318.89 -2.30 3.50 16 8 N -0.45 -7.11 4.75 -174.36 -0.83 -7.94 16 9 C 0.08 1.30 4.99 -3.76 -0.02 1.28 16 10 C 0.05 0.98 5.61 -3.76 -0.02 0.96 16 11 N -0.54 -11.29 4.70 -235.91 -1.11 -12.40 16 12 C 0.19 4.91 4.72 -4.97 -0.02 4.89 16 13 C -0.51 -13.90 8.47 -34.44 -0.29 -14.19 16 14 H 0.06 1.68 7.13 -52.48 -0.37 1.31 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 17 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.07 1.26 5.43 -3.77 -0.02 1.24 16 22 C 0.05 0.83 5.43 -3.77 -0.02 0.81 16 23 N -0.49 -6.07 3.21 -121.45 -0.39 -6.45 16 24 C 0.07 0.59 9.18 59.85 0.55 1.14 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.50 6.95 -51.93 -0.36 0.14 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.35 8.02 -51.93 -0.42 0.94 16 34 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 37 H 0.03 0.89 8.03 -51.93 -0.42 0.47 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.83 6.79 -51.93 -0.35 1.47 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.07 0.91 5.35 -51.93 -0.28 0.63 16 43 H 0.08 0.54 7.80 -51.92 -0.40 0.13 16 44 H 0.09 0.48 7.24 -51.93 -0.38 0.10 16 45 H 0.10 0.80 7.65 -51.93 -0.40 0.41 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -32.44 355.86 -10.96 -43.41 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -7.58 Total: -3.64 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.88 Total: 0.44 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.85 Total: -61.70 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.44 -10.96 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601860230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.643 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds