Wall clock time and date at job start Tue Mar 31 2020 03:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46869 * 2 1 4 4 N 1.28711 * 125.86438 * 84.95176 * 3 2 1 5 5 N 1.28639 * 110.17917 * 180.02562 * 4 3 2 6 6 C 1.33772 * 108.88034 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.74855 * 180.02562 * 6 5 4 8 8 C 1.35306 * 125.87024 * 265.29857 * 3 2 1 9 9 C 1.50704 * 126.91409 * 359.96910 * 8 3 2 10 10 N 1.46894 * 109.47433 * 276.46622 * 9 8 3 11 11 C 1.46965 * 110.99885 * 288.02049 * 10 9 8 12 12 C 1.53051 * 109.36421 * 176.81226 * 11 10 9 13 13 N 1.46961 * 109.36449 * 58.39871 * 12 11 10 14 14 C 1.46901 * 110.99670 * 176.80912 * 13 12 11 15 15 C 1.50694 * 109.47445 * 293.79750 * 14 13 12 16 16 H 1.08003 * 119.99645 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00350 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99707 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00328 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47154 * 90.00506 * 19 17 15 21 21 H 1.48503 * 109.47074 * 210.00333 * 19 17 15 22 22 H 1.48498 * 109.46983 * 330.00261 * 19 17 15 23 23 C 1.46953 * 110.87890 * 300.67763 * 13 12 11 24 24 C 1.46953 * 111.00388 * 164.21690 * 10 9 8 25 25 H 1.08995 * 109.46779 * 184.97584 * 1 2 3 26 26 H 1.09000 * 109.47185 * 304.98076 * 1 2 3 27 27 H 1.08997 * 109.46772 * 64.98090 * 1 2 3 28 28 H 1.09004 * 109.47304 * 240.00120 * 2 1 3 29 29 H 1.08992 * 109.46992 * 119.99814 * 2 1 3 30 30 H 1.09003 * 109.47251 * 90.02414 * 7 6 5 31 31 H 1.08998 * 109.47307 * 210.02990 * 7 6 5 32 32 H 1.09001 * 109.47282 * 330.02709 * 7 6 5 33 33 H 1.09003 * 109.46806 * 36.46293 * 9 8 3 34 34 H 1.08999 * 109.46871 * 156.45930 * 9 8 3 35 35 H 1.09003 * 109.48424 * 296.77840 * 11 10 9 36 36 H 1.08996 * 109.49277 * 56.84132 * 11 10 9 37 37 H 1.08994 * 109.49003 * 298.42881 * 12 11 10 38 38 H 1.08998 * 109.48850 * 178.36308 * 12 11 10 39 39 H 1.08999 * 109.47022 * 53.80004 * 14 13 12 40 40 H 1.08999 * 109.46924 * 173.79625 * 14 13 12 41 41 H 0.97002 * 119.99953 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.48836 * 299.35355 * 23 13 12 43 43 H 1.09004 * 109.48699 * 179.28872 * 23 13 12 44 44 H 1.08997 * 109.49131 * 303.15678 * 24 10 9 45 45 H 1.09007 * 109.48651 * 63.22103 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1831 2.1228 1.0390 5 7 2.6242 3.2805 0.6926 6 6 2.7601 3.3116 -0.6379 7 6 3.2478 4.4712 -1.4676 8 6 2.3673 2.0988 -1.0928 9 6 2.3305 1.6387 -2.5274 10 7 3.5586 0.8935 -2.8343 11 6 4.7154 1.7961 -2.9175 12 6 5.9838 0.9744 -3.1591 13 7 5.8337 0.1995 -4.3988 14 6 7.0619 -0.5457 -4.7058 15 6 8.1711 0.4234 -5.0247 16 1 7.9825 1.4866 -5.0012 17 6 9.4267 -0.0472 -5.3453 18 7 9.6564 -1.3419 -5.3734 19 14 10.8018 1.1540 -5.7400 20 1 11.5245 1.5065 -4.4916 21 1 11.7467 0.5271 -6.6988 22 1 10.2272 2.3833 -6.3432 23 6 4.6770 -0.7030 -4.3155 24 6 3.4085 0.1186 -4.0739 25 1 -0.3633 -1.0238 0.0891 26 1 -0.3633 0.5892 0.8420 27 1 -0.3633 0.4346 -0.9312 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 4.3305 4.4094 -1.5774 31 1 2.7802 4.4361 -2.4515 32 1 2.9856 5.4069 -0.9739 33 1 1.4659 0.9927 -2.6796 34 1 2.2571 2.5050 -3.1849 35 1 4.5726 2.4952 -3.7415 36 1 4.8130 2.3494 -1.9835 37 1 6.1415 0.2943 -2.3221 38 1 6.8391 1.6440 -3.2502 39 1 7.3446 -1.1508 -3.8444 40 1 6.8883 -1.1944 -5.5643 41 1 10.5397 -1.6730 -5.5993 42 1 4.8198 -1.4021 -3.4915 43 1 4.5795 -1.2563 -5.2496 44 1 2.5533 -0.5510 -3.9830 45 1 3.2509 0.7987 -4.9111 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602747601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:12 Heat of formation + Delta-G solvation = 104.055827 kcal Electronic energy + Delta-G solvation = -24357.930555 eV Core-core repulsion = 21026.560817 eV Total energy + Delta-G solvation = -3331.369738 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.32436 -38.86968 -35.79606 -35.46281 -33.02811 -32.23563 -31.08852 -30.48629 -28.98591 -27.47806 -25.94448 -24.72602 -23.80309 -23.12747 -21.48210 -21.21319 -20.47745 -19.26622 -17.21613 -16.60169 -16.32975 -15.69405 -15.17768 -15.04490 -14.66394 -14.54743 -14.30533 -13.98643 -13.65913 -13.54957 -13.25258 -13.03358 -12.96719 -12.65774 -12.33961 -12.17156 -12.03546 -11.85116 -11.82049 -11.49773 -11.24340 -10.93353 -10.81915 -10.76068 -10.62767 -10.45734 -10.34761 -10.00617 -9.76990 -9.21795 -8.98796 -8.46934 -8.33571 -7.28986 -6.05054 -4.06641 1.52020 2.28734 2.50793 3.30624 3.36937 3.40803 3.94859 4.18819 4.35058 4.40419 4.52171 4.66459 4.74551 4.85558 4.88901 4.95950 5.12455 5.20624 5.26425 5.30240 5.31098 5.45099 5.57142 5.60087 5.62001 5.65564 5.71159 5.79094 5.83726 5.94209 6.00706 6.09265 6.25114 6.33445 6.51092 6.55578 6.64373 7.01068 7.05416 7.28456 7.32244 7.76777 8.04756 8.15778 8.51099 8.52142 9.00728 9.57882 11.05840 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.003650 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.590059 B = 7670.365239 C = 8315.411597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.276 5.276 4 N -0.091 5.091 5 N -0.272 5.272 6 C -0.020 4.020 7 C -0.068 4.068 8 C 0.000 4.000 9 C 0.125 3.875 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.068 3.932 13 N -0.537 5.537 14 C 0.194 3.806 15 C -0.508 4.508 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.057 3.943 24 C 0.062 3.938 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.026 0.974 38 H 0.087 0.913 39 H -0.009 1.009 40 H 0.030 0.970 41 H 0.261 0.739 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.241 3.704 6.430 20.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.070 5.070 4 N -0.069 5.069 5 N -0.138 5.138 6 C -0.159 4.159 7 C -0.127 4.127 8 C -0.133 4.133 9 C -0.005 4.005 10 N -0.264 5.264 11 C -0.070 4.070 12 C -0.061 4.061 13 N -0.262 5.262 14 C 0.069 3.931 15 C -0.547 4.547 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.072 4.072 24 C -0.066 4.066 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.106 0.894 39 H 0.009 0.991 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.211 3.608 7.943 21.099 hybrid contribution 0.911 0.150 -1.249 1.553 sum -18.300 3.758 6.695 19.845 Atomic orbital electron populations 1.22154 0.93289 1.03821 1.03343 1.22100 0.95811 0.76926 1.06304 1.47202 1.42165 1.13063 1.04575 1.78231 1.18478 0.98168 1.12014 1.75026 1.15365 1.11505 1.11918 1.21773 1.06055 0.96400 0.91658 1.20128 1.01540 0.93728 0.97281 1.21741 1.07058 0.92774 0.91731 1.20438 0.94116 0.98128 0.87834 1.62183 1.02522 1.26161 1.35502 1.22348 0.90197 0.94224 1.00249 1.21981 0.95925 0.97074 0.91074 1.62301 1.05321 1.26350 1.32266 1.19699 0.84915 0.93051 0.95452 1.21140 0.93776 0.93423 1.46311 0.91907 1.24988 0.98748 0.95191 0.95647 1.69958 1.22393 1.12257 1.49205 0.86508 0.81709 0.81118 0.78168 1.20712 1.21253 1.19744 1.22056 0.90783 0.94289 1.00113 1.22195 0.98320 0.96422 0.89682 0.89748 0.91392 0.91791 0.87070 0.87800 0.90361 0.90942 0.90664 0.89838 0.91615 0.93828 0.90994 0.95533 0.89442 0.99126 0.95205 0.92911 0.95243 0.90845 0.91165 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.24 37.16 0.38 -0.66 16 2 C 0.11 0.91 6.90 -4.04 -0.03 0.88 16 3 N -0.28 -3.35 3.34 -57.04 -0.19 -3.54 16 4 N -0.09 -1.35 13.16 60.35 0.79 -0.55 16 5 N -0.27 -4.25 12.41 33.29 0.41 -3.84 16 6 C -0.02 -0.26 6.57 -82.78 -0.54 -0.81 16 7 C -0.07 -0.70 9.77 36.01 0.35 -0.35 16 8 C 0.00 0.00 5.89 -82.09 -0.48 -0.49 16 9 C 0.12 1.29 4.77 -4.98 -0.02 1.27 16 10 N -0.54 -7.01 4.66 -235.91 -1.10 -8.11 16 11 C 0.06 0.86 5.40 -3.76 -0.02 0.84 16 12 C 0.07 1.31 5.43 -3.76 -0.02 1.29 16 13 N -0.54 -11.18 4.70 -235.91 -1.11 -12.29 16 14 C 0.19 4.97 4.72 -4.98 -0.02 4.95 16 15 C -0.51 -14.05 8.47 -34.44 -0.29 -14.34 16 16 H 0.06 1.71 7.13 -52.48 -0.37 1.34 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 C 0.06 0.96 5.61 -3.77 -0.02 0.94 16 24 C 0.06 0.80 5.58 -3.77 -0.02 0.78 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.11 0.86 7.66 -51.93 -0.40 0.46 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.81 7.44 -51.93 -0.39 0.43 16 31 H 0.07 0.62 7.20 -51.93 -0.37 0.25 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.69 7.80 -51.93 -0.40 0.29 16 34 H 0.07 0.63 7.06 -51.93 -0.37 0.27 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.06 5.64 -51.93 -0.29 0.77 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.81 6.79 -51.93 -0.35 1.46 16 39 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 40 H 0.03 0.81 8.03 -51.93 -0.42 0.40 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.07 0.72 8.02 -51.93 -0.42 0.31 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -32.43 357.76 -8.49 -40.92 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -7.56 Total: -4.39 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.84 Total: -4.23 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.45 Total: -54.13 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.43 -8.49 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602747601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.976 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds