Wall clock time and date at job start Tue Mar 31 2020 03:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46869 * 2 1 4 4 N 1.28711 * 125.86438 * 84.95176 * 3 2 1 5 5 N 1.28639 * 110.17917 * 180.02562 * 4 3 2 6 6 C 1.33772 * 108.88034 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.74855 * 180.02562 * 6 5 4 8 8 C 1.35306 * 125.87024 * 265.29857 * 3 2 1 9 9 C 1.50704 * 126.91409 * 359.96910 * 8 3 2 10 10 N 1.46894 * 109.47433 * 276.46622 * 9 8 3 11 11 C 1.46965 * 110.99885 * 288.02049 * 10 9 8 12 12 C 1.53051 * 109.36421 * 176.81226 * 11 10 9 13 13 N 1.46961 * 109.36449 * 58.39871 * 12 11 10 14 14 C 1.46901 * 110.99670 * 176.80912 * 13 12 11 15 15 C 1.50694 * 109.47445 * 293.79750 * 14 13 12 16 16 H 1.08003 * 119.99645 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00350 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99707 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00328 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47154 * 90.00506 * 19 17 15 21 21 H 1.48503 * 109.47074 * 210.00333 * 19 17 15 22 22 H 1.48498 * 109.46983 * 330.00261 * 19 17 15 23 23 C 1.46953 * 110.87890 * 300.67763 * 13 12 11 24 24 C 1.46953 * 111.00388 * 164.21690 * 10 9 8 25 25 H 1.08995 * 109.46779 * 184.97584 * 1 2 3 26 26 H 1.09000 * 109.47185 * 304.98076 * 1 2 3 27 27 H 1.08997 * 109.46772 * 64.98090 * 1 2 3 28 28 H 1.09004 * 109.47304 * 240.00120 * 2 1 3 29 29 H 1.08992 * 109.46992 * 119.99814 * 2 1 3 30 30 H 1.09003 * 109.47251 * 90.02414 * 7 6 5 31 31 H 1.08998 * 109.47307 * 210.02990 * 7 6 5 32 32 H 1.09001 * 109.47282 * 330.02709 * 7 6 5 33 33 H 1.09003 * 109.46806 * 36.46293 * 9 8 3 34 34 H 1.08999 * 109.46871 * 156.45930 * 9 8 3 35 35 H 1.09003 * 109.48424 * 296.77840 * 11 10 9 36 36 H 1.08996 * 109.49277 * 56.84132 * 11 10 9 37 37 H 1.08994 * 109.49003 * 298.42881 * 12 11 10 38 38 H 1.08998 * 109.48850 * 178.36308 * 12 11 10 39 39 H 1.08999 * 109.47022 * 53.80004 * 14 13 12 40 40 H 1.08999 * 109.46924 * 173.79625 * 14 13 12 41 41 H 0.97002 * 119.99953 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.48836 * 299.35355 * 23 13 12 43 43 H 1.09004 * 109.48699 * 179.28872 * 23 13 12 44 44 H 1.08997 * 109.49131 * 303.15678 * 24 10 9 45 45 H 1.09007 * 109.48651 * 63.22103 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1831 2.1228 1.0390 5 7 2.6242 3.2805 0.6926 6 6 2.7601 3.3116 -0.6379 7 6 3.2478 4.4712 -1.4676 8 6 2.3673 2.0988 -1.0928 9 6 2.3305 1.6387 -2.5274 10 7 3.5586 0.8935 -2.8343 11 6 4.7154 1.7961 -2.9175 12 6 5.9838 0.9744 -3.1591 13 7 5.8337 0.1995 -4.3988 14 6 7.0619 -0.5457 -4.7058 15 6 8.1711 0.4234 -5.0247 16 1 7.9825 1.4866 -5.0012 17 6 9.4267 -0.0472 -5.3453 18 7 9.6564 -1.3419 -5.3734 19 14 10.8018 1.1540 -5.7400 20 1 11.5245 1.5065 -4.4916 21 1 11.7467 0.5271 -6.6988 22 1 10.2272 2.3833 -6.3432 23 6 4.6770 -0.7030 -4.3155 24 6 3.4085 0.1186 -4.0739 25 1 -0.3633 -1.0238 0.0891 26 1 -0.3633 0.5892 0.8420 27 1 -0.3633 0.4346 -0.9312 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 4.3305 4.4094 -1.5774 31 1 2.7802 4.4361 -2.4515 32 1 2.9856 5.4069 -0.9739 33 1 1.4659 0.9927 -2.6796 34 1 2.2571 2.5050 -3.1849 35 1 4.5726 2.4952 -3.7415 36 1 4.8130 2.3494 -1.9835 37 1 6.1415 0.2943 -2.3221 38 1 6.8391 1.6440 -3.2502 39 1 7.3446 -1.1508 -3.8444 40 1 6.8883 -1.1944 -5.5643 41 1 10.5397 -1.6730 -5.5993 42 1 4.8198 -1.4021 -3.4915 43 1 4.5795 -1.2563 -5.2496 44 1 2.5533 -0.5510 -3.9830 45 1 3.2509 0.7987 -4.9111 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602747601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:11 Heat of formation + Delta-G solvation = 80.023650 kcal Electronic energy + Delta-G solvation = -24358.972668 eV Core-core repulsion = 21026.560817 eV Total energy + Delta-G solvation = -3332.411851 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.27447 -40.16104 -36.99755 -36.48813 -34.75701 -33.55557 -31.91086 -31.78585 -30.28525 -28.77310 -27.33230 -25.67013 -25.04067 -24.41588 -23.23367 -22.10410 -21.40901 -20.61453 -18.49282 -18.10976 -17.51957 -17.02788 -16.35182 -16.09699 -16.03525 -15.82815 -15.42439 -15.36651 -14.91682 -14.65588 -14.30618 -14.22638 -13.88253 -13.71901 -13.47704 -13.33785 -13.11178 -12.98117 -12.84650 -12.67929 -12.61825 -12.45419 -12.32380 -12.22895 -12.09732 -11.94748 -11.64756 -11.45842 -11.19719 -10.91895 -10.62509 -9.95211 -9.38645 -9.03225 -8.21312 -6.31384 0.58627 1.41260 1.42051 1.47376 1.53675 1.53754 2.39885 2.93183 3.11302 3.30197 3.35889 3.61909 3.83145 3.90900 3.96719 3.98459 4.20383 4.23138 4.30886 4.33173 4.40199 4.49463 4.57019 4.68354 4.69930 4.76133 4.80207 4.82301 4.89729 4.95656 4.98433 5.04678 5.06732 5.12025 5.16584 5.22244 5.28772 5.40380 5.63565 5.70075 5.94822 6.01441 6.06079 6.32501 6.63473 6.84707 7.38596 7.53295 8.89900 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.003650 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.590059 B = 7670.365239 C = 8315.411597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.270 5.270 4 N -0.120 5.120 5 N -0.310 5.310 6 C -0.032 4.032 7 C -0.068 4.068 8 C -0.001 4.001 9 C 0.130 3.870 10 N -0.546 5.546 11 C 0.074 3.926 12 C 0.071 3.929 13 N -0.539 5.539 14 C 0.208 3.792 15 C -0.523 4.523 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.052 3.948 24 C 0.073 3.927 25 H 0.109 0.891 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.123 0.877 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.005 0.995 38 H 0.064 0.936 39 H -0.044 1.044 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.018 0.982 43 H 0.075 0.925 44 H 0.110 0.890 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.057 4.508 5.440 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.020 4.020 3 N -0.065 5.065 4 N -0.098 5.098 5 N -0.175 5.175 6 C -0.172 4.172 7 C -0.126 4.126 8 C -0.135 4.135 9 C 0.001 3.999 10 N -0.272 5.272 11 C -0.054 4.054 12 C -0.058 4.058 13 N -0.264 5.264 14 C 0.082 3.918 15 C -0.561 4.561 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.186 1.186 23 C -0.077 4.077 24 C -0.054 4.054 25 H 0.127 0.873 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.141 0.859 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.023 0.977 38 H 0.083 0.917 39 H -0.027 1.027 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.093 0.907 44 H 0.129 0.871 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.066 4.413 6.977 22.626 hybrid contribution 1.435 -0.188 -0.916 1.713 sum -19.631 4.225 6.062 20.975 Atomic orbital electron populations 1.22117 0.91400 1.05169 1.03006 1.22467 0.97326 0.75197 1.07008 1.47569 1.40918 1.13880 1.04092 1.78158 1.19802 0.98599 1.13220 1.74978 1.16719 1.12310 1.13522 1.22308 1.05915 0.97799 0.91196 1.20224 1.01407 0.93011 0.97975 1.22061 1.06453 0.92448 0.92524 1.20559 0.93453 0.99244 0.86611 1.62072 1.03079 1.26311 1.35705 1.22079 0.89014 0.93634 1.00642 1.21930 0.97909 0.96446 0.89493 1.62233 1.04431 1.26544 1.33228 1.19344 0.87051 0.92408 0.92994 1.21460 0.94738 0.93724 1.46166 0.91824 1.25911 1.01437 0.96968 0.95332 1.70087 1.23162 1.14253 1.50085 0.85402 0.78306 0.78945 0.78112 1.20086 1.20723 1.18608 1.22212 0.91184 0.94441 0.99863 1.22139 0.96898 0.96594 0.89782 0.87286 0.92897 0.91134 0.85913 0.87588 0.90675 0.88738 0.90284 0.86658 0.89841 0.92941 0.90694 0.97707 0.91723 1.02682 0.97524 0.92709 0.96385 0.90704 0.87148 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 10.24 71.98 0.74 -0.79 16 2 C 0.10 1.42 6.90 86.38 0.60 2.02 16 3 N -0.27 -6.13 3.34 -334.39 -1.12 -7.24 16 4 N -0.12 -3.53 13.16 37.02 0.49 -3.04 16 5 N -0.31 -9.64 12.41 -48.60 -0.60 -10.25 16 6 C -0.03 -0.81 6.57 41.60 0.27 -0.53 16 7 C -0.07 -1.27 9.77 71.24 0.70 -0.58 16 8 C 0.00 -0.02 5.89 41.36 0.24 0.22 16 9 C 0.13 2.15 4.77 85.56 0.41 2.56 16 10 N -0.55 -12.52 4.66 -900.28 -4.19 -16.71 16 11 C 0.07 2.10 5.40 86.31 0.47 2.57 16 12 C 0.07 2.76 5.43 86.31 0.47 3.22 16 13 N -0.54 -22.66 4.70 -900.30 -4.23 -26.89 16 14 C 0.21 11.12 4.72 85.55 0.40 11.52 16 15 C -0.52 -29.55 8.47 25.60 0.22 -29.33 16 16 H 0.06 3.51 7.13 -2.91 -0.02 3.49 16 17 C 0.00 0.08 5.46 84.65 0.46 0.55 16 18 N -0.94 -56.48 13.29 21.45 0.28 -56.19 16 19 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 C 0.05 1.70 5.61 86.31 0.48 2.18 16 24 C 0.07 1.63 5.58 86.31 0.48 2.11 16 25 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.12 1.48 7.66 -2.39 -0.02 1.47 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.46 7.44 -2.39 -0.02 1.44 16 31 H 0.09 1.32 7.20 -2.39 -0.02 1.30 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 1.25 7.80 -2.39 -0.02 1.23 16 34 H 0.08 1.17 7.06 -2.39 -0.02 1.16 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 2.10 5.64 -2.39 -0.01 2.09 16 37 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.06 2.76 6.79 -2.39 -0.02 2.74 16 39 H -0.04 -2.63 8.12 -2.39 -0.02 -2.65 16 40 H 0.01 0.38 8.03 -2.39 -0.02 0.36 16 41 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 42 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 2.42 8.07 -2.38 -0.02 2.40 16 44 H 0.11 1.67 8.02 -2.39 -0.02 1.65 16 45 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -73.30 357.76 -0.45 -73.75 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 0.96 Total: 4.62 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.94 Total: -4.28 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -9.37 Total: -120.32 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -73.30 -0.45 -73.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602747601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.769 kcal (2) G-P(sol) polarization free energy of solvation -73.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds