Wall clock time and date at job start Tue Mar 31 2020 02:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30515 * 126.34803 * 2 1 4 4 N 1.28590 * 109.67477 * 179.82282 * 3 2 1 5 5 C 1.30526 * 109.67005 * 0.45281 * 4 3 2 6 6 C 1.50707 * 126.34483 * 179.72566 * 5 4 3 7 7 N 1.46896 * 109.46925 * 269.99917 * 6 5 4 8 8 C 1.46897 * 111.00102 * 294.30102 * 7 6 5 9 9 C 1.53235 * 109.33854 * 172.74926 * 8 7 6 10 10 H 1.09005 * 109.62939 * 173.53987 * 9 8 7 11 11 C 1.52998 * 109.63236 * 294.11897 * 9 8 7 12 12 N 1.47083 * 108.52163 * 53.83471 * 9 8 7 13 13 C 1.36938 * 120.88540 * 128.83876 * 12 9 8 14 14 H 1.07992 * 119.99702 * 206.24861 * 13 12 9 15 15 C 1.38811 * 120.00000 * 26.24164 * 13 12 9 16 16 N 1.31625 * 119.99810 * 17.40945 * 15 13 12 17 17 Si 1.86796 * 120.00079 * 197.40729 * 15 13 12 18 18 H 1.48503 * 109.47162 * 60.00190 * 17 15 13 19 19 H 1.48501 * 109.47158 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47262 * 300.00225 * 17 15 13 21 21 C 1.47074 * 118.23434 * 308.80987 * 12 9 8 22 22 H 1.09003 * 109.79547 * 291.38306 * 21 12 9 23 23 C 1.53007 * 109.63106 * 170.89773 * 21 12 9 24 24 C 1.46904 * 110.99654 * 170.00152 * 7 6 5 25 25 N 1.35493 * 126.34072 * 180.31334 * 2 1 3 26 26 C 1.46492 * 126.98607 * 359.97438 * 25 2 1 27 27 H 1.08999 * 109.47267 * 269.68729 * 1 2 3 28 28 H 1.08998 * 109.47258 * 29.68846 * 1 2 3 29 29 H 1.08997 * 109.47487 * 149.68637 * 1 2 3 30 30 H 1.09001 * 109.46772 * 29.99969 * 6 5 4 31 31 H 1.08997 * 109.46427 * 149.99687 * 6 5 4 32 32 H 1.09005 * 109.49329 * 292.71116 * 8 7 6 33 33 H 1.08999 * 109.48994 * 52.79012 * 8 7 6 34 34 H 1.08993 * 109.47611 * 179.02826 * 11 9 8 35 35 H 1.08991 * 109.47030 * 299.03326 * 11 9 8 36 36 H 1.09002 * 109.46923 * 59.03018 * 11 9 8 37 37 H 0.97001 * 119.99426 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46526 * 300.97015 * 23 21 12 39 39 H 1.08993 * 109.46786 * 60.97231 * 23 21 12 40 40 H 1.08995 * 109.47309 * 180.97273 * 23 21 12 41 41 H 1.09003 * 109.49277 * 307.21572 * 24 7 6 42 42 H 1.09006 * 109.49379 * 67.26556 * 24 7 6 43 43 H 1.09007 * 109.47370 * 89.97327 * 26 25 2 44 44 H 1.08996 * 109.47505 * 209.97557 * 26 25 2 45 45 H 1.09005 * 109.47335 * 329.97714 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0512 0.0000 4 7 3.5124 0.6823 0.0037 5 6 3.5807 -0.6212 -0.0034 6 6 4.8396 -1.4496 -0.0080 7 7 5.2486 -1.7112 -1.3944 8 6 4.2636 -2.5555 -2.0835 9 6 4.6306 -2.6550 -3.5679 10 1 3.9720 -3.3702 -4.0608 11 6 4.4880 -1.2811 -4.2259 12 7 6.0245 -3.1119 -3.6750 13 6 6.3569 -4.1735 -4.4736 14 1 7.2324 -4.7646 -4.2492 15 6 5.5684 -4.4899 -5.5713 16 7 4.7221 -3.6033 -6.0511 17 14 5.7084 -6.1738 -6.3676 18 1 5.3728 -7.2222 -5.3708 19 1 4.7661 -6.2600 -7.5121 20 1 7.0970 -6.3782 -6.8524 21 6 7.0521 -2.3979 -2.9021 22 1 7.1867 -1.3943 -3.3057 23 6 8.3750 -3.1631 -2.9759 24 6 6.5898 -2.3084 -1.4438 25 7 2.3099 -1.0914 -0.0060 26 6 1.8896 -2.4947 -0.0131 27 1 -0.3634 -0.0056 1.0276 28 1 -0.3634 0.8927 -0.5090 29 1 -0.3634 -0.8871 -0.5187 30 1 5.6323 -0.9087 0.5088 31 1 4.6538 -2.3955 0.5007 32 1 4.2652 -3.5516 -1.6408 33 1 3.2722 -2.1138 -1.9827 34 1 4.7661 -1.3511 -5.2774 35 1 3.4543 -0.9451 -4.1451 36 1 5.1421 -0.5682 -3.7238 37 1 4.1709 -3.8245 -6.8180 38 1 8.2359 -4.1683 -2.5779 39 1 8.7014 -3.2251 -4.0139 40 1 9.1300 -2.6410 -2.3882 41 1 7.2854 -1.6877 -0.8791 42 1 6.5592 -3.3078 -1.0096 43 1 1.7846 -2.8373 -1.0426 44 1 2.6383 -3.1009 0.4969 45 1 0.9332 -2.5902 0.5009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602856432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:34 Heat of formation + Delta-G solvation = 117.729826 kcal Electronic energy + Delta-G solvation = -25358.278197 eV Core-core repulsion = 22027.501409 eV Total energy + Delta-G solvation = -3330.776789 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.02514 -38.63738 -35.39922 -34.79144 -32.72694 -32.29884 -31.24602 -28.90950 -27.72141 -27.43315 -26.22564 -25.87824 -24.08409 -22.40389 -21.27717 -20.84100 -20.12889 -18.62619 -16.83898 -16.77602 -16.17197 -15.31522 -15.07503 -14.64063 -14.49735 -14.18455 -13.85251 -13.61825 -13.44814 -13.25556 -13.04511 -12.88416 -12.72498 -12.57398 -12.00738 -11.85154 -11.54900 -11.35441 -11.25040 -10.98340 -10.92624 -10.65042 -10.57941 -10.46684 -10.16872 -10.08910 -10.04815 -9.95336 -9.49528 -9.30066 -8.87377 -8.48713 -7.89544 -6.65714 -5.77593 -3.18557 1.85590 2.50240 3.00519 3.35561 3.42227 3.42565 4.25277 4.34899 4.46226 4.48357 4.54495 4.82854 4.89833 5.10245 5.17258 5.25807 5.29438 5.37277 5.48968 5.57156 5.72659 5.77702 5.88919 5.95416 6.04526 6.07431 6.08986 6.25775 6.29053 6.29863 6.39019 6.58012 6.81722 6.90852 6.94913 7.01965 7.09571 7.22468 7.42410 7.46956 7.69930 7.80699 7.93732 8.43741 8.92039 9.22532 9.85108 10.43269 11.29875 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.004936 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.982853 B = 5671.174824 C = 6357.739381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.164 3.836 3 N -0.297 5.297 4 N -0.281 5.281 5 C 0.196 3.804 6 C 0.139 3.861 7 N -0.521 5.521 8 C 0.038 3.962 9 C 0.201 3.799 10 H 0.095 0.905 11 C -0.133 4.133 12 N -0.584 5.584 13 C -0.249 4.249 14 H 0.071 0.929 15 C 0.002 3.998 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.284 1.284 21 C 0.171 3.829 22 H 0.036 0.964 23 C -0.137 4.137 24 C 0.052 3.948 25 N -0.472 5.472 26 C 0.068 3.932 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.044 0.956 32 H 0.024 0.976 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.015 0.985 36 H 0.035 0.965 37 H 0.252 0.748 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.030 0.970 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 0.454 13.194 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 N -0.138 5.138 4 N -0.121 5.121 5 C -0.071 4.071 6 C 0.009 3.991 7 N -0.246 5.246 8 C -0.091 4.091 9 C 0.094 3.906 10 H 0.112 0.888 11 C -0.192 4.192 12 N -0.307 5.307 13 C -0.379 4.379 14 H 0.089 0.911 15 C -0.197 4.197 16 N -0.543 5.543 17 Si 0.728 3.272 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.210 1.210 21 C 0.064 3.936 22 H 0.053 0.947 23 C -0.195 4.195 24 C -0.077 4.077 25 N -0.164 5.164 26 C -0.075 4.075 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.614 2.293 12.791 14.155 hybrid contribution -0.548 -3.020 -0.116 3.072 sum -6.161 -0.727 12.675 14.112 Atomic orbital electron populations 1.20162 0.84099 1.04497 1.03514 1.24734 0.96891 0.83077 1.05606 1.74224 0.96653 1.23983 1.18937 1.74224 1.11673 1.08070 1.18116 1.24623 0.86305 0.92523 1.03680 1.20395 0.90526 0.95660 0.92542 1.61883 1.03297 1.48364 1.11066 1.23052 0.93876 0.92820 0.99384 1.20363 0.86831 0.95710 0.87704 0.88771 1.21929 0.97309 0.97342 1.02639 1.44283 1.00977 1.34370 1.51094 1.19159 1.11299 1.03491 1.03928 0.91113 1.24994 1.00606 0.97861 0.96209 1.70020 1.27635 1.32032 1.24641 0.86437 0.77419 0.84708 0.78588 1.21343 1.21760 1.20998 1.20471 0.89171 0.95135 0.88855 0.94670 1.21797 0.96006 0.99770 1.01925 1.22701 0.88561 0.96297 1.00180 1.46001 1.06881 1.08583 1.54896 1.22203 1.02298 0.78276 1.04739 0.90013 0.88786 0.90571 0.87832 0.93817 0.95779 0.92717 0.90792 0.96576 0.94632 0.93749 0.92952 0.91794 0.94106 0.91617 0.95151 0.89274 0.89217 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.06 36.01 0.36 -0.19 16 2 C 0.16 2.27 8.03 -154.99 -1.24 1.03 16 3 N -0.30 -5.27 12.21 32.80 0.40 -4.87 16 4 N -0.28 -5.27 12.21 32.80 0.40 -4.87 16 5 C 0.20 3.13 6.66 -154.98 -1.03 2.10 16 6 C 0.14 2.02 5.32 -4.97 -0.03 2.00 16 7 N -0.52 -9.13 4.11 -235.76 -0.97 -10.10 16 8 C 0.04 0.70 4.21 -3.70 -0.02 0.69 16 9 C 0.20 4.60 2.35 -67.49 -0.16 4.44 16 10 H 0.09 2.44 6.11 -51.93 -0.32 2.12 16 11 C -0.13 -3.14 8.96 37.16 0.33 -2.81 16 12 N -0.58 -13.84 2.73 -157.01 -0.43 -14.27 16 13 C -0.25 -6.43 8.73 -15.06 -0.13 -6.56 16 14 H 0.07 1.78 6.15 -52.49 -0.32 1.46 16 15 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 16 N -0.90 -24.85 9.79 55.49 0.54 -24.30 16 17 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.17 3.47 3.25 -67.49 -0.22 3.25 16 22 H 0.04 0.79 7.64 -51.93 -0.40 0.39 16 23 C -0.14 -2.48 7.93 37.16 0.29 -2.18 16 24 C 0.05 0.89 4.91 -3.70 -0.02 0.87 16 25 N -0.47 -6.30 2.74 -118.00 -0.32 -6.63 16 26 C 0.07 0.62 9.42 59.84 0.56 1.19 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 30 H 0.10 1.40 7.97 -51.93 -0.41 0.99 16 31 H 0.04 0.55 7.20 -51.93 -0.37 0.17 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.98 4.63 -51.93 -0.24 0.74 16 34 H 0.07 1.95 6.91 -51.93 -0.36 1.59 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.03 0.84 7.08 -51.93 -0.37 0.47 16 37 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.05 0.95 7.54 -51.93 -0.39 0.55 16 39 H 0.06 1.25 7.57 -51.93 -0.39 0.86 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.88 6.85 -51.93 -0.36 0.52 16 44 H 0.09 0.75 7.19 -51.93 -0.37 0.37 16 45 H 0.09 0.55 7.81 -51.93 -0.41 0.14 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -31.98 343.15 -8.82 -40.80 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.21 Total: -0.68 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.38 Total: 3.79 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -0.38 Total: -65.04 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.98 -8.82 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602856432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.531 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds