Wall clock time and date at job start Tue Mar 31 2020 02:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30515 * 126.34803 * 2 1 4 4 N 1.28590 * 109.67477 * 179.82282 * 3 2 1 5 5 C 1.30526 * 109.67005 * 0.45281 * 4 3 2 6 6 C 1.50707 * 126.34483 * 179.72566 * 5 4 3 7 7 N 1.46896 * 109.46925 * 269.99917 * 6 5 4 8 8 C 1.46897 * 111.00102 * 294.30102 * 7 6 5 9 9 C 1.53235 * 109.33854 * 172.74926 * 8 7 6 10 10 H 1.09005 * 109.62939 * 173.53987 * 9 8 7 11 11 C 1.52998 * 109.63236 * 294.11897 * 9 8 7 12 12 N 1.47083 * 108.52163 * 53.83471 * 9 8 7 13 13 C 1.36938 * 120.88540 * 128.83876 * 12 9 8 14 14 H 1.07992 * 119.99702 * 206.24861 * 13 12 9 15 15 C 1.38811 * 120.00000 * 26.24164 * 13 12 9 16 16 N 1.31625 * 119.99810 * 17.40945 * 15 13 12 17 17 Si 1.86796 * 120.00079 * 197.40729 * 15 13 12 18 18 H 1.48503 * 109.47162 * 60.00190 * 17 15 13 19 19 H 1.48501 * 109.47158 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47262 * 300.00225 * 17 15 13 21 21 C 1.47074 * 118.23434 * 308.80987 * 12 9 8 22 22 H 1.09003 * 109.79547 * 291.38306 * 21 12 9 23 23 C 1.53007 * 109.63106 * 170.89773 * 21 12 9 24 24 C 1.46904 * 110.99654 * 170.00152 * 7 6 5 25 25 N 1.35493 * 126.34072 * 180.31334 * 2 1 3 26 26 C 1.46492 * 126.98607 * 359.97438 * 25 2 1 27 27 H 1.08999 * 109.47267 * 269.68729 * 1 2 3 28 28 H 1.08998 * 109.47258 * 29.68846 * 1 2 3 29 29 H 1.08997 * 109.47487 * 149.68637 * 1 2 3 30 30 H 1.09001 * 109.46772 * 29.99969 * 6 5 4 31 31 H 1.08997 * 109.46427 * 149.99687 * 6 5 4 32 32 H 1.09005 * 109.49329 * 292.71116 * 8 7 6 33 33 H 1.08999 * 109.48994 * 52.79012 * 8 7 6 34 34 H 1.08993 * 109.47611 * 179.02826 * 11 9 8 35 35 H 1.08991 * 109.47030 * 299.03326 * 11 9 8 36 36 H 1.09002 * 109.46923 * 59.03018 * 11 9 8 37 37 H 0.97001 * 119.99426 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.46526 * 300.97015 * 23 21 12 39 39 H 1.08993 * 109.46786 * 60.97231 * 23 21 12 40 40 H 1.08995 * 109.47309 * 180.97273 * 23 21 12 41 41 H 1.09003 * 109.49277 * 307.21572 * 24 7 6 42 42 H 1.09006 * 109.49379 * 67.26556 * 24 7 6 43 43 H 1.09007 * 109.47370 * 89.97327 * 26 25 2 44 44 H 1.08996 * 109.47505 * 209.97557 * 26 25 2 45 45 H 1.09005 * 109.47335 * 329.97714 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0512 0.0000 4 7 3.5124 0.6823 0.0037 5 6 3.5807 -0.6212 -0.0034 6 6 4.8396 -1.4496 -0.0080 7 7 5.2486 -1.7112 -1.3944 8 6 4.2636 -2.5555 -2.0835 9 6 4.6306 -2.6550 -3.5679 10 1 3.9720 -3.3702 -4.0608 11 6 4.4880 -1.2811 -4.2259 12 7 6.0245 -3.1119 -3.6750 13 6 6.3569 -4.1735 -4.4736 14 1 7.2324 -4.7646 -4.2492 15 6 5.5684 -4.4899 -5.5713 16 7 4.7221 -3.6033 -6.0511 17 14 5.7084 -6.1738 -6.3676 18 1 5.3728 -7.2222 -5.3708 19 1 4.7661 -6.2600 -7.5121 20 1 7.0970 -6.3782 -6.8524 21 6 7.0521 -2.3979 -2.9021 22 1 7.1867 -1.3943 -3.3057 23 6 8.3750 -3.1631 -2.9759 24 6 6.5898 -2.3084 -1.4438 25 7 2.3099 -1.0914 -0.0060 26 6 1.8896 -2.4947 -0.0131 27 1 -0.3634 -0.0056 1.0276 28 1 -0.3634 0.8927 -0.5090 29 1 -0.3634 -0.8871 -0.5187 30 1 5.6323 -0.9087 0.5088 31 1 4.6538 -2.3955 0.5007 32 1 4.2652 -3.5516 -1.6408 33 1 3.2722 -2.1138 -1.9827 34 1 4.7661 -1.3511 -5.2774 35 1 3.4543 -0.9451 -4.1451 36 1 5.1421 -0.5682 -3.7238 37 1 4.1709 -3.8245 -6.8180 38 1 8.2359 -4.1683 -2.5779 39 1 8.7014 -3.2251 -4.0139 40 1 9.1300 -2.6410 -2.3882 41 1 7.2854 -1.6877 -0.8791 42 1 6.5592 -3.3078 -1.0096 43 1 1.7846 -2.8373 -1.0426 44 1 2.6383 -3.1009 0.4969 45 1 0.9332 -2.5902 0.5009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602856432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:33 Heat of formation + Delta-G solvation = 97.646983 kcal Electronic energy + Delta-G solvation = -25359.149055 eV Core-core repulsion = 22027.501409 eV Total energy + Delta-G solvation = -3331.647646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.12316 -40.17743 -36.81557 -35.94906 -34.33568 -33.64023 -32.85402 -30.18826 -29.28972 -28.33339 -27.58619 -27.29700 -25.88643 -23.90234 -22.74251 -21.93599 -21.38723 -20.36712 -18.14246 -17.82612 -17.71198 -17.00119 -16.37629 -16.05958 -15.78643 -15.70087 -15.22625 -15.02554 -14.67687 -14.49609 -14.46813 -13.71818 -13.66801 -13.48338 -13.38881 -13.26476 -13.14872 -12.89685 -12.75894 -12.70136 -12.49261 -12.30389 -12.25369 -12.21356 -11.87212 -11.66976 -11.30146 -11.27337 -11.13338 -11.01895 -10.45692 -10.03750 -9.26062 -8.55602 -7.77018 -5.19480 0.79842 1.49714 1.50743 1.56934 1.57226 1.83612 2.55813 3.01930 3.30115 3.37142 3.57019 3.58827 3.77320 3.87940 4.12987 4.24734 4.28168 4.33014 4.37213 4.47738 4.53463 4.61269 4.65324 4.68618 4.75293 4.84742 4.86764 4.87919 4.88943 4.98324 5.02610 5.05066 5.18737 5.24752 5.25766 5.45058 5.54698 5.67624 5.75376 5.89654 5.95939 6.14977 6.19538 6.47775 7.24812 7.77868 7.95508 8.49383 9.28299 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.004936 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.982853 B = 5671.174824 C = 6357.739381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.173 3.827 3 N -0.347 5.347 4 N -0.326 5.326 5 C 0.186 3.814 6 C 0.145 3.855 7 N -0.540 5.540 8 C 0.059 3.941 9 C 0.200 3.800 10 H 0.062 0.938 11 C -0.113 4.113 12 N -0.598 5.598 13 C -0.249 4.249 14 H 0.076 0.924 15 C -0.050 4.050 16 N -0.927 5.927 17 Si 0.957 3.043 18 H -0.280 1.280 19 H -0.301 1.301 20 H -0.281 1.281 21 C 0.161 3.839 22 H 0.010 0.990 23 C -0.127 4.127 24 C 0.063 3.937 25 N -0.470 5.470 26 C 0.059 3.941 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.061 0.939 34 H 0.038 0.962 35 H 0.018 0.982 36 H 0.028 0.972 37 H 0.244 0.756 38 H 0.053 0.947 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.039 0.961 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.370 -1.001 15.564 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.095 4.095 3 N -0.188 5.188 4 N -0.166 5.166 5 C -0.083 4.083 6 C 0.016 3.984 7 N -0.265 5.265 8 C -0.070 4.070 9 C 0.093 3.907 10 H 0.080 0.920 11 C -0.172 4.172 12 N -0.321 5.321 13 C -0.380 4.380 14 H 0.094 0.906 15 C -0.245 4.245 16 N -0.574 5.574 17 Si 0.787 3.213 18 H -0.206 1.206 19 H -0.228 1.228 20 H -0.207 1.207 21 C 0.055 3.945 22 H 0.027 0.973 23 C -0.185 4.185 24 C -0.066 4.066 25 N -0.162 5.162 26 C -0.082 4.082 27 H 0.126 0.874 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.057 0.943 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.997 0.829 15.193 16.355 hybrid contribution -0.435 -2.511 -0.845 2.685 sum -6.432 -1.682 14.349 15.814 Atomic orbital electron populations 1.20424 0.80554 1.05682 1.05522 1.25621 0.98682 0.82443 1.02761 1.74119 0.96947 1.26135 1.21572 1.74097 1.12754 1.09933 1.19800 1.24806 0.87710 0.92111 1.03657 1.20437 0.90450 0.96855 0.90700 1.61743 1.03187 1.48200 1.13369 1.22660 0.94446 0.93646 0.96290 1.20223 0.86288 0.93787 0.90421 0.92036 1.21705 0.97058 0.98137 1.00328 1.44522 1.02028 1.34384 1.51170 1.19477 1.10905 1.03884 1.03685 0.90615 1.25652 1.01075 1.00626 0.97176 1.70198 1.28729 1.33420 1.25027 0.85496 0.76985 0.81386 0.77447 1.20580 1.22751 1.20719 1.20682 0.89669 0.93710 0.90450 0.97259 1.21693 0.95640 1.00023 1.01132 1.22536 0.88907 0.97452 0.97714 1.46228 1.05961 1.10000 1.53966 1.22542 1.04618 0.76013 1.05038 0.87449 0.88770 0.88178 0.86745 0.90870 0.94958 0.92029 0.94329 0.96271 0.95264 0.94669 0.92764 0.94127 0.90574 0.88837 0.94257 0.89950 0.87957 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.06 71.24 0.72 -0.19 16 2 C 0.17 4.50 8.03 137.98 1.11 5.61 16 3 N -0.35 -12.23 12.21 -50.15 -0.61 -12.84 16 4 N -0.33 -12.15 12.21 -50.15 -0.61 -12.76 16 5 C 0.19 5.64 6.66 137.98 0.92 6.56 16 6 C 0.15 3.82 5.32 85.56 0.46 4.27 16 7 N -0.54 -17.84 4.11 -899.81 -3.69 -21.53 16 8 C 0.06 2.10 4.21 86.38 0.36 2.47 16 9 C 0.20 9.24 2.35 44.96 0.11 9.35 16 10 H 0.06 3.26 6.11 -2.38 -0.01 3.25 16 11 C -0.11 -5.50 8.96 71.98 0.65 -4.86 16 12 N -0.60 -28.37 2.73 -650.65 -1.78 -30.15 16 13 C -0.25 -12.90 8.73 84.03 0.73 -12.16 16 14 H 0.08 3.78 6.15 -2.91 -0.02 3.76 16 15 C -0.05 -2.69 4.93 84.86 0.42 -2.27 16 16 N -0.93 -52.95 9.79 21.65 0.21 -52.73 16 17 Si 0.96 43.62 29.59 68.60 2.03 45.65 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 C 0.16 6.41 3.25 44.96 0.15 6.56 16 22 H 0.01 0.43 7.64 -2.39 -0.02 0.41 16 23 C -0.13 -4.38 7.93 71.98 0.57 -3.81 16 24 C 0.06 1.98 4.91 86.38 0.42 2.40 16 25 N -0.47 -11.45 2.74 -527.24 -1.44 -12.90 16 26 C 0.06 0.88 9.42 127.77 1.20 2.08 16 27 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 0.97 7.86 -2.39 -0.02 0.95 16 30 H 0.11 2.77 7.97 -2.39 -0.02 2.75 16 31 H 0.07 1.52 7.20 -2.39 -0.02 1.50 16 32 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.06 2.11 4.63 -2.39 -0.01 2.10 16 34 H 0.04 2.12 6.91 -2.39 -0.02 2.10 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.03 1.41 7.08 -2.39 -0.02 1.39 16 37 H 0.24 13.79 8.31 -92.71 -0.77 13.01 16 38 H 0.05 1.84 7.54 -2.39 -0.02 1.82 16 39 H 0.04 1.56 7.57 -2.39 -0.02 1.54 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.09 2.46 7.99 -2.39 -0.02 2.44 16 42 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.08 1.39 6.85 -2.38 -0.02 1.37 16 44 H 0.10 1.28 7.19 -2.39 -0.02 1.27 16 45 H 0.13 0.95 7.81 -2.38 -0.02 0.93 16 Total: -1.00 -72.77 343.15 2.89 -69.89 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.98 Total: 11.37 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 7.81 Total: 16.01 kcal Atomic # 7 Polarization: -134.99 SS G_CDS: -7.93 Total: -142.92 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -72.77 2.89 -69.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602856432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.532 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds