Wall clock time and date at job start Tue Mar 31 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30511 * 126.34686 * 2 1 4 4 N 1.28596 * 109.67815 * 180.02562 * 3 2 1 5 5 C 1.30520 * 109.67003 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.34917 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47347 * 89.97994 * 6 5 4 8 8 C 1.46904 * 110.99861 * 294.30307 * 7 6 5 9 9 C 1.53238 * 109.34179 * 172.74298 * 8 7 6 10 10 H 1.08998 * 109.63042 * 294.12182 * 9 8 7 11 11 C 1.52998 * 109.78811 * 173.63507 * 9 8 7 12 12 N 1.47085 * 108.51753 * 53.83164 * 9 8 7 13 13 C 1.36935 * 120.87783 * 128.83538 * 12 9 8 14 14 H 1.07994 * 120.00648 * 331.87450 * 13 12 9 15 15 C 1.38820 * 119.99679 * 151.86947 * 13 12 9 16 16 N 1.31614 * 119.99836 * 342.75989 * 15 13 12 17 17 Si 1.86795 * 119.99753 * 162.75250 * 15 13 12 18 18 H 1.48508 * 109.46978 * 90.00308 * 17 15 13 19 19 H 1.48501 * 109.47168 * 210.00124 * 17 15 13 20 20 H 1.48504 * 109.47435 * 330.00543 * 17 15 13 21 21 C 1.47077 * 118.23827 * 308.81296 * 12 9 8 22 22 H 1.08998 * 109.62719 * 170.89767 * 21 12 9 23 23 C 1.53005 * 109.78880 * 291.38195 * 21 12 9 24 24 C 1.46895 * 111.00429 * 170.00346 * 7 6 5 25 25 N 1.35493 * 126.34365 * 180.02562 * 2 1 3 26 26 C 1.46492 * 126.98601 * 359.95612 * 25 2 1 27 27 H 1.09004 * 109.47182 * 269.97080 * 1 2 3 28 28 H 1.08998 * 109.47068 * 29.97223 * 1 2 3 29 29 H 1.09007 * 109.47258 * 149.97127 * 1 2 3 30 30 H 1.09006 * 109.47334 * 209.98027 * 6 5 4 31 31 H 1.08997 * 109.47289 * 329.97718 * 6 5 4 32 32 H 1.08997 * 109.49493 * 292.70802 * 8 7 6 33 33 H 1.08999 * 109.49156 * 52.78240 * 8 7 6 34 34 H 1.09003 * 109.47205 * 296.65070 * 11 9 8 35 35 H 1.08997 * 109.47430 * 56.65066 * 11 9 8 36 36 H 1.09002 * 109.47092 * 176.65471 * 11 9 8 37 37 H 0.97003 * 119.99821 * 175.15415 * 16 15 13 38 38 H 1.08997 * 109.47354 * 179.12785 * 23 21 12 39 39 H 1.08999 * 109.47378 * 299.12903 * 23 21 12 40 40 H 1.09004 * 109.47233 * 59.12779 * 23 21 12 41 41 H 1.09004 * 109.48984 * 307.20641 * 24 7 6 42 42 H 1.08999 * 109.49356 * 67.26221 * 24 7 6 43 43 H 1.08998 * 109.47496 * 270.02910 * 26 25 2 44 44 H 1.09006 * 109.46964 * 30.02590 * 26 25 2 45 45 H 1.09003 * 109.47868 * 150.02300 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0512 0.0000 4 7 3.5124 0.6823 -0.0005 5 6 3.5808 -0.6211 -0.0015 6 6 4.8396 -1.4495 -0.0018 7 7 5.2486 -1.7193 1.3830 8 6 5.6378 -0.4794 2.0681 9 6 5.8818 -0.7744 3.5518 10 1 4.9450 -1.0675 4.0258 11 6 6.4394 0.4716 4.2428 12 7 6.8534 -1.8737 3.6559 13 6 7.9639 -1.7574 4.4487 14 1 8.3924 -0.7845 4.6387 15 6 8.5389 -2.8903 5.0082 16 7 7.8548 -4.0129 5.0709 17 14 10.2836 -2.8213 5.6719 18 1 10.2531 -2.4324 7.1048 19 1 10.9185 -4.1567 5.5349 20 1 11.0663 -1.8199 4.9038 21 6 6.6004 -3.1013 2.8864 22 1 7.4742 -3.7510 2.9358 23 6 5.3842 -3.8310 3.4604 24 6 6.3280 -2.7146 1.4288 25 7 2.3100 -1.0914 -0.0005 26 6 1.8897 -2.4947 -0.0002 27 1 -0.3634 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5143 30 1 4.6539 -2.3925 -0.5160 31 1 5.6323 -0.9056 -0.5154 32 1 6.5510 -0.0875 1.6201 33 1 4.8395 0.2563 1.9699 34 1 7.4089 0.7226 3.8124 35 1 5.7516 1.3050 4.0997 36 1 6.5551 0.2749 5.3087 37 1 8.2793 -4.8219 5.3969 38 1 5.1920 -4.7315 2.8770 39 1 5.5806 -4.1048 4.4970 40 1 4.5136 -3.1767 3.4161 41 1 6.0303 -3.6001 0.8672 42 1 7.2315 -2.2919 0.9893 43 1 1.7856 -2.8427 1.0275 44 1 0.9328 -2.5875 -0.5139 45 1 2.6379 -3.0983 -0.5141 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602856435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:42 Heat of formation + Delta-G solvation = 94.894120 kcal Electronic energy + Delta-G solvation = -25141.787056 eV Core-core repulsion = 21810.020037 eV Total energy + Delta-G solvation = -3331.767019 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -44.08915 -40.14585 -36.71133 -35.97690 -34.27968 -33.80096 -32.72671 -30.09878 -29.23552 -28.19504 -27.86716 -27.15991 -25.87564 -23.89607 -22.45704 -21.98756 -21.54665 -20.35579 -18.14231 -17.75798 -17.53561 -17.05621 -16.18687 -16.12018 -15.96910 -15.70824 -15.13596 -15.00712 -14.82400 -14.31807 -14.25874 -13.76275 -13.67804 -13.43495 -13.41349 -13.26366 -13.17592 -12.92871 -12.75185 -12.65006 -12.44444 -12.31606 -12.24248 -12.18922 -11.92177 -11.65721 -11.30553 -11.25179 -11.09387 -10.95369 -10.45109 -10.03650 -9.33569 -8.55313 -7.74820 -5.21716 0.81880 1.47723 1.50893 1.58721 1.62636 1.82329 2.56391 2.98200 3.34385 3.38560 3.58946 3.60770 3.86062 3.92911 4.17833 4.22378 4.29016 4.34194 4.49142 4.53271 4.56250 4.61990 4.69104 4.73292 4.74928 4.77677 4.85495 4.90866 4.98878 4.99945 5.08010 5.10559 5.22551 5.27160 5.31613 5.35882 5.48453 5.70715 5.77555 5.97532 6.00782 6.13814 6.18330 6.49359 7.27035 7.77400 7.94974 8.49518 9.27261 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.028343 B = 0.004267 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.646733 B = 6560.220990 C = 6957.088262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.172 3.828 3 N -0.348 5.348 4 N -0.335 5.335 5 C 0.186 3.814 6 C 0.140 3.860 7 N -0.525 5.525 8 C 0.067 3.933 9 C 0.171 3.829 10 H 0.009 0.991 11 C -0.128 4.128 12 N -0.598 5.598 13 C -0.254 4.254 14 H 0.066 0.934 15 C -0.042 4.042 16 N -0.917 5.917 17 Si 0.952 3.048 18 H -0.292 1.292 19 H -0.293 1.293 20 H -0.278 1.278 21 C 0.195 3.805 22 H 0.060 0.940 23 C -0.117 4.117 24 C 0.055 3.945 25 N -0.462 5.462 26 C 0.066 3.934 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.021 0.979 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.045 0.955 37 H 0.246 0.754 38 H 0.044 0.956 39 H 0.036 0.964 40 H 0.031 0.969 41 H 0.095 0.905 42 H 0.021 0.979 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.553 -0.295 -13.033 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.096 4.096 3 N -0.188 5.188 4 N -0.175 5.175 5 C -0.083 4.083 6 C 0.011 3.989 7 N -0.250 5.250 8 C -0.063 4.063 9 C 0.065 3.935 10 H 0.027 0.973 11 C -0.186 4.186 12 N -0.321 5.321 13 C -0.384 4.384 14 H 0.084 0.916 15 C -0.238 4.238 16 N -0.563 5.563 17 Si 0.781 3.219 18 H -0.219 1.219 19 H -0.219 1.219 20 H -0.203 1.203 21 C 0.089 3.911 22 H 0.078 0.922 23 C -0.176 4.176 24 C -0.073 4.073 25 N -0.152 5.152 26 C -0.075 4.075 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.114 0.886 42 H 0.039 0.961 43 H 0.104 0.896 44 H 0.140 0.860 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.492 0.797 -12.668 19.265 hybrid contribution 1.524 -0.949 0.427 1.845 sum -12.968 -0.152 -12.241 17.834 Atomic orbital electron populations 1.20421 0.80463 1.06032 1.05121 1.25630 0.98704 0.82459 1.02817 1.74107 0.96828 1.26228 1.21664 1.74124 1.13056 1.09986 1.20372 1.24688 0.88018 0.91826 1.03774 1.20450 0.89070 0.98385 0.91026 1.61871 1.39242 1.10704 1.13220 1.22391 0.97783 0.90915 0.95182 1.20520 0.91346 0.89021 0.92657 0.97302 1.21686 1.00433 0.96415 1.00095 1.44494 1.22966 1.13585 1.51079 1.19431 1.03118 0.93711 1.22153 0.91645 1.25571 1.01661 0.97270 0.99303 1.70198 1.34718 1.00338 1.51087 0.85535 0.81980 0.76439 0.77912 1.21892 1.21910 1.20303 1.20318 0.96512 0.87312 0.86993 0.92203 1.21727 0.97407 0.97831 1.00629 1.22660 0.90921 0.94791 0.98958 1.46149 1.05590 1.10316 1.53166 1.22457 1.04192 0.75509 1.05330 0.88683 0.88402 0.87350 0.85999 0.92062 0.96113 0.91659 0.93174 0.91906 0.93540 0.94509 0.93682 0.94466 0.95000 0.88636 0.96116 0.89639 0.86019 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.24 71.24 0.73 -0.02 16 2 C 0.17 4.12 8.03 137.98 1.11 5.23 16 3 N -0.35 -11.58 12.21 -50.16 -0.61 -12.19 16 4 N -0.33 -11.91 11.30 -50.15 -0.57 -12.47 16 5 C 0.19 5.39 6.65 137.97 0.92 6.31 16 6 C 0.14 3.71 5.32 85.56 0.46 4.16 16 7 N -0.53 -17.33 4.13 -899.83 -3.72 -21.05 16 8 C 0.07 2.57 4.77 86.38 0.41 2.99 16 9 C 0.17 7.48 3.25 44.96 0.15 7.62 16 10 H 0.01 0.44 7.62 -2.39 -0.02 0.42 16 11 C -0.13 -5.20 7.96 71.98 0.57 -4.63 16 12 N -0.60 -29.34 2.73 -650.64 -1.78 -31.12 16 13 C -0.25 -13.68 8.71 84.04 0.73 -12.95 16 14 H 0.07 3.51 6.17 -2.91 -0.02 3.49 16 15 C -0.04 -2.29 4.91 84.86 0.42 -1.87 16 16 N -0.92 -51.69 9.81 21.65 0.21 -51.48 16 17 Si 0.95 44.61 29.59 68.60 2.03 46.64 16 18 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 C 0.20 8.75 2.34 44.96 0.11 8.85 16 22 H 0.06 3.09 6.25 -2.39 -0.01 3.07 16 23 C -0.12 -5.03 8.99 71.98 0.65 -4.39 16 24 C 0.06 1.94 5.00 86.38 0.43 2.37 16 25 N -0.46 -10.31 3.15 -527.26 -1.66 -11.97 16 26 C 0.07 0.78 10.86 127.77 1.39 2.17 16 27 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 0.58 7.22 -2.38 -0.02 0.56 16 30 H 0.12 2.32 7.04 -2.38 -0.02 2.30 16 31 H 0.06 1.69 8.12 -2.39 -0.02 1.67 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 2.58 6.38 -2.39 -0.02 2.56 16 34 H 0.05 2.05 7.32 -2.39 -0.02 2.04 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 1.98 7.79 -2.39 -0.02 1.96 16 37 H 0.25 13.56 8.32 -92.71 -0.77 12.79 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.04 1.88 6.77 -2.39 -0.02 1.87 16 40 H 0.03 1.33 7.09 -2.38 -0.02 1.31 16 41 H 0.10 2.70 7.99 -2.38 -0.02 2.68 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.12 0.57 7.20 -2.38 -0.02 0.55 16 45 H 0.10 0.97 7.20 -2.39 -0.02 0.96 16 Total: -1.00 -71.94 346.75 2.95 -69.00 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.97 Total: 8.80 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 8.06 Total: 15.83 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -8.12 Total: -140.28 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -71.94 2.95 -69.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602856435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.891 kcal (2) G-P(sol) polarization free energy of solvation -71.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds