Wall clock time and date at job start Tue Mar 31 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30299 * 126.34509 * 2 1 4 4 N 1.28521 * 110.05616 * 179.97438 * 3 2 1 5 5 C 1.31224 * 109.85862 * 0.02562 * 4 3 2 6 6 N 1.38580 * 126.46974 * 180.02562 * 5 4 3 7 7 C 1.46967 * 110.99497 * 123.77622 * 6 5 4 8 8 C 1.53052 * 109.36166 * 176.80988 * 7 6 5 9 9 N 1.46955 * 109.36599 * 58.40237 * 8 7 6 10 10 C 1.46900 * 111.00229 * 176.81160 * 9 8 7 11 11 C 1.53002 * 109.46771 * 293.79960 * 10 9 8 12 12 C 1.53002 * 109.46829 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46778 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00485 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99731 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99810 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99790 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47334 * 90.00262 * 17 15 13 19 19 H 1.48504 * 109.46849 * 209.99546 * 17 15 13 20 20 H 1.48494 * 109.47472 * 329.99686 * 17 15 13 21 21 C 1.46959 * 110.88125 * 300.67906 * 9 8 7 22 22 C 1.46955 * 111.00420 * 359.97438 * 6 5 4 23 23 N 1.36453 * 107.05076 * 359.97438 * 5 4 3 24 24 C 1.46505 * 127.13080 * 179.97438 * 23 5 4 25 25 H 1.09000 * 109.47566 * 269.99839 * 1 2 3 26 26 H 1.08994 * 109.47494 * 30.00669 * 1 2 3 27 27 H 1.09007 * 109.46650 * 150.00350 * 1 2 3 28 28 H 1.09000 * 109.48579 * 296.77631 * 7 6 5 29 29 H 1.08993 * 109.48755 * 56.84298 * 7 6 5 30 30 H 1.08998 * 109.49322 * 298.43275 * 8 7 6 31 31 H 1.09003 * 109.48640 * 178.36687 * 8 7 6 32 32 H 1.09002 * 109.47129 * 53.79739 * 10 9 8 33 33 H 1.09000 * 109.46762 * 173.80060 * 10 9 8 34 34 H 1.09002 * 109.47114 * 299.99789 * 11 10 9 35 35 H 1.08994 * 109.47219 * 60.00060 * 11 10 9 36 36 H 1.09002 * 109.46915 * 299.99684 * 12 11 10 37 37 H 1.08994 * 109.47356 * 59.99917 * 12 11 10 38 38 H 0.97002 * 119.99785 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.49058 * 299.35363 * 21 9 8 40 40 H 1.08998 * 109.49121 * 179.28359 * 21 9 8 41 41 H 1.08995 * 109.48864 * 303.15445 * 22 6 5 42 42 H 1.09004 * 109.48618 * 63.19414 * 22 6 5 43 43 H 1.08993 * 109.47647 * 89.99596 * 24 23 5 44 44 H 1.09005 * 109.46612 * 209.99638 * 24 23 5 45 45 H 1.08997 * 109.47243 * 329.99119 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5128 0.6890 0.0005 5 6 3.5945 -0.6207 0.0004 6 7 4.7581 -1.3734 0.0013 7 6 4.7848 -2.3001 1.1417 8 6 6.0443 -3.1661 1.0624 9 7 7.2317 -2.3003 1.0631 10 6 8.4651 -3.0983 1.0642 11 6 8.5761 -3.8638 2.3842 12 6 9.8610 -4.6944 2.3856 13 6 9.9700 -5.4489 3.6855 14 1 9.2001 -5.3460 4.4359 15 6 11.0527 -6.2707 3.9170 16 7 11.1480 -6.9288 5.0516 17 14 12.3846 -6.4482 2.6194 18 1 13.4328 -5.4200 2.8421 19 1 12.9904 -7.8008 2.7137 20 1 11.7899 -6.2650 1.2712 21 6 7.2050 -1.3736 -0.0771 22 6 5.9455 -0.5076 0.0020 23 7 2.3174 -1.1012 0.0002 24 6 1.9011 -2.5059 -0.0005 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8898 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 4.7920 -1.7319 2.0718 29 1 3.9020 -2.9387 1.1120 30 1 6.0239 -3.7546 0.1452 31 1 6.0809 -3.8342 1.9228 32 1 8.4411 -3.8054 0.2350 33 1 9.3252 -2.4378 0.9537 34 1 8.6001 -3.1567 3.2134 35 1 7.7160 -4.5241 2.4947 36 1 9.8374 -5.4015 1.5564 37 1 10.7209 -4.0338 2.2753 38 1 11.9095 -7.5072 5.2143 39 1 7.1978 -1.9417 -1.0074 40 1 8.0878 -0.7349 -0.0475 41 1 5.9089 0.1605 -0.8584 42 1 5.9657 0.0812 0.9190 43 1 1.7980 -2.8549 1.0269 44 1 0.9444 -2.6009 -0.5142 45 1 2.6510 -3.1068 -0.5149 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602941862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:47 Heat of formation + Delta-G solvation = 93.116517 kcal Electronic energy + Delta-G solvation = -23587.218229 eV Core-core repulsion = 20255.374127 eV Total energy + Delta-G solvation = -3331.844102 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.22269 -39.55793 -36.37128 -35.34130 -33.71129 -32.20602 -31.41450 -31.18465 -28.73989 -27.70737 -27.06015 -25.40483 -23.91753 -22.37841 -21.55350 -21.09466 -19.94540 -19.94157 -17.71582 -16.83666 -16.73191 -16.48371 -15.37427 -15.24175 -15.21723 -14.73315 -14.49684 -14.15530 -13.95749 -13.93201 -13.68584 -13.32339 -13.11131 -12.96734 -12.69488 -12.39517 -11.99881 -11.72923 -11.69346 -11.45988 -11.37342 -11.21387 -10.94155 -10.75279 -10.65715 -10.43168 -10.02399 -9.93268 -9.70415 -9.60013 -9.18789 -8.54600 -8.43891 -8.25858 -6.05045 -4.02898 1.49046 1.93599 2.61708 3.29794 3.36882 3.37171 3.40242 3.89227 4.06068 4.19860 4.44291 4.48589 4.52015 4.59380 4.78504 4.82308 4.90284 5.04487 5.08412 5.18482 5.19019 5.23372 5.28972 5.34388 5.46826 5.54204 5.64215 5.66339 5.71435 5.76798 5.80659 5.96139 6.11327 6.23987 6.41707 6.49352 6.51444 6.87252 6.90644 7.12035 7.16186 7.31749 7.44053 7.79241 8.53746 8.56801 9.00272 9.57588 11.08485 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.036376 B = 0.002642 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.561993 B =10593.824666 C =11007.475477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.167 3.833 3 N -0.283 5.283 4 N -0.322 5.322 5 C 0.365 3.635 6 N -0.453 5.453 7 C 0.054 3.946 8 C 0.056 3.944 9 N -0.540 5.540 10 C 0.055 3.945 11 C -0.097 4.097 12 C -0.013 4.013 13 C -0.519 4.519 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.054 3.946 22 C 0.077 3.923 23 N -0.486 5.486 24 C 0.073 3.927 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.263 0.737 39 H 0.042 0.958 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.067 9.888 -13.166 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.101 4.101 3 N -0.123 5.123 4 N -0.167 5.167 5 C 0.009 3.991 6 N -0.178 5.178 7 C -0.073 4.073 8 C -0.072 4.072 9 N -0.265 5.265 10 C -0.072 4.072 11 C -0.135 4.135 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.543 5.543 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.074 4.074 22 C -0.050 4.050 23 N -0.182 5.182 24 C -0.070 4.070 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.495 11.174 -13.065 26.751 hybrid contribution 0.433 -1.800 -0.728 1.989 sum -20.062 9.374 -13.793 26.088 Atomic orbital electron populations 1.20166 0.83649 1.04318 1.03900 1.24758 0.96587 0.82182 1.06574 1.73964 0.96313 1.24004 1.17978 1.74635 1.12009 1.06456 1.23571 1.22725 0.84155 0.89931 1.02290 1.58906 0.98767 1.17979 1.42103 1.22496 0.99534 0.94526 0.90723 1.22199 0.88350 0.94371 1.02310 1.62228 1.02744 1.19696 1.41833 1.22324 0.90355 0.95425 0.99132 1.21481 0.99588 0.97800 0.94661 1.19551 0.92986 0.94904 0.97679 1.21136 1.08045 1.25448 1.01046 0.91063 1.25048 0.97998 0.95275 0.95294 1.69918 1.30742 1.29689 1.23998 0.86766 0.82262 0.77336 0.82821 1.20279 1.21451 1.19090 1.22231 0.97122 0.95493 0.92580 1.22163 0.85719 0.93634 1.03493 1.46043 1.05689 1.08761 1.57730 1.22158 1.02830 0.77992 1.03998 0.89725 0.88721 0.90605 0.92264 0.90055 0.93828 0.88480 0.95070 0.90904 0.91940 0.92925 0.96870 0.97029 0.92768 0.93983 0.89264 0.88999 0.91747 0.90022 0.89007 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.26 36.01 0.37 0.05 16 2 C 0.17 1.72 8.07 -154.02 -1.24 0.48 16 3 N -0.28 -4.01 12.18 32.99 0.40 -3.61 16 4 N -0.32 -4.84 11.30 30.32 0.34 -4.50 16 5 C 0.37 4.61 7.22 -318.87 -2.30 2.31 16 6 N -0.45 -5.28 4.76 -174.35 -0.83 -6.11 16 7 C 0.05 0.58 5.42 -3.76 -0.02 0.56 16 8 C 0.06 0.68 5.41 -3.77 -0.02 0.66 16 9 N -0.54 -7.36 4.71 -234.46 -1.10 -8.47 16 10 C 0.05 0.85 4.96 -3.82 -0.02 0.83 16 11 C -0.10 -1.86 5.09 -26.73 -0.14 -2.00 16 12 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 13 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 17 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 21 C 0.05 0.64 5.61 -3.77 -0.02 0.61 16 22 C 0.08 0.91 4.99 -3.77 -0.02 0.89 16 23 N -0.49 -4.76 3.21 -121.46 -0.39 -5.15 16 24 C 0.07 0.39 9.31 59.85 0.56 0.94 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.22 7.27 -51.92 -0.38 -0.15 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.68 5.32 -51.93 -0.28 0.41 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 1.23 6.34 -51.93 -0.33 0.90 16 32 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.07 1.10 8.03 -51.93 -0.42 0.69 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.99 6.49 -51.93 -0.34 0.65 16 36 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 37 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 41 H 0.09 1.07 8.02 -51.93 -0.42 0.65 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.33 7.79 -51.93 -0.40 -0.07 16 44 H 0.09 0.26 7.25 -51.93 -0.38 -0.12 16 45 H 0.10 0.51 7.63 -51.93 -0.40 0.11 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -34.64 352.22 -11.05 -45.69 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -7.48 Total: -4.68 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.40 Total: -8.35 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.81 Total: -54.95 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.64 -11.05 -45.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602941862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.803 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds