Wall clock time and date at job start Tue Mar 31 2020 02:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30299 * 126.34509 * 2 1 4 4 N 1.28521 * 110.05616 * 179.97438 * 3 2 1 5 5 C 1.31224 * 109.85862 * 0.02562 * 4 3 2 6 6 N 1.38580 * 126.46974 * 180.02562 * 5 4 3 7 7 C 1.46967 * 110.99497 * 123.77622 * 6 5 4 8 8 C 1.53052 * 109.36166 * 176.80988 * 7 6 5 9 9 N 1.46955 * 109.36599 * 58.40237 * 8 7 6 10 10 C 1.46900 * 111.00229 * 176.81160 * 9 8 7 11 11 C 1.53002 * 109.46771 * 293.79960 * 10 9 8 12 12 C 1.53002 * 109.46829 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46778 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00485 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99731 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99810 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99790 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47334 * 90.00262 * 17 15 13 19 19 H 1.48504 * 109.46849 * 209.99546 * 17 15 13 20 20 H 1.48494 * 109.47472 * 329.99686 * 17 15 13 21 21 C 1.46959 * 110.88125 * 300.67906 * 9 8 7 22 22 C 1.46955 * 111.00420 * 359.97438 * 6 5 4 23 23 N 1.36453 * 107.05076 * 359.97438 * 5 4 3 24 24 C 1.46505 * 127.13080 * 179.97438 * 23 5 4 25 25 H 1.09000 * 109.47566 * 269.99839 * 1 2 3 26 26 H 1.08994 * 109.47494 * 30.00669 * 1 2 3 27 27 H 1.09007 * 109.46650 * 150.00350 * 1 2 3 28 28 H 1.09000 * 109.48579 * 296.77631 * 7 6 5 29 29 H 1.08993 * 109.48755 * 56.84298 * 7 6 5 30 30 H 1.08998 * 109.49322 * 298.43275 * 8 7 6 31 31 H 1.09003 * 109.48640 * 178.36687 * 8 7 6 32 32 H 1.09002 * 109.47129 * 53.79739 * 10 9 8 33 33 H 1.09000 * 109.46762 * 173.80060 * 10 9 8 34 34 H 1.09002 * 109.47114 * 299.99789 * 11 10 9 35 35 H 1.08994 * 109.47219 * 60.00060 * 11 10 9 36 36 H 1.09002 * 109.46915 * 299.99684 * 12 11 10 37 37 H 1.08994 * 109.47356 * 59.99917 * 12 11 10 38 38 H 0.97002 * 119.99785 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.49058 * 299.35363 * 21 9 8 40 40 H 1.08998 * 109.49121 * 179.28359 * 21 9 8 41 41 H 1.08995 * 109.48864 * 303.15445 * 22 6 5 42 42 H 1.09004 * 109.48618 * 63.19414 * 22 6 5 43 43 H 1.08993 * 109.47647 * 89.99596 * 24 23 5 44 44 H 1.09005 * 109.46612 * 209.99638 * 24 23 5 45 45 H 1.08997 * 109.47243 * 329.99119 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5128 0.6890 0.0005 5 6 3.5945 -0.6207 0.0004 6 7 4.7581 -1.3734 0.0013 7 6 4.7848 -2.3001 1.1417 8 6 6.0443 -3.1661 1.0624 9 7 7.2317 -2.3003 1.0631 10 6 8.4651 -3.0983 1.0642 11 6 8.5761 -3.8638 2.3842 12 6 9.8610 -4.6944 2.3856 13 6 9.9700 -5.4489 3.6855 14 1 9.2001 -5.3460 4.4359 15 6 11.0527 -6.2707 3.9170 16 7 11.1480 -6.9288 5.0516 17 14 12.3846 -6.4482 2.6194 18 1 13.4328 -5.4200 2.8421 19 1 12.9904 -7.8008 2.7137 20 1 11.7899 -6.2650 1.2712 21 6 7.2050 -1.3736 -0.0771 22 6 5.9455 -0.5076 0.0020 23 7 2.3174 -1.1012 0.0002 24 6 1.9011 -2.5059 -0.0005 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8898 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 4.7920 -1.7319 2.0718 29 1 3.9020 -2.9387 1.1120 30 1 6.0239 -3.7546 0.1452 31 1 6.0809 -3.8342 1.9228 32 1 8.4411 -3.8054 0.2350 33 1 9.3252 -2.4378 0.9537 34 1 8.6001 -3.1567 3.2134 35 1 7.7160 -4.5241 2.4947 36 1 9.8374 -5.4015 1.5564 37 1 10.7209 -4.0338 2.2753 38 1 11.9095 -7.5072 5.2143 39 1 7.1978 -1.9417 -1.0074 40 1 8.0878 -0.7349 -0.0475 41 1 5.9089 0.1605 -0.8584 42 1 5.9657 0.0812 0.9190 43 1 1.7980 -2.8549 1.0269 44 1 0.9444 -2.6009 -0.5142 45 1 2.6510 -3.1068 -0.5149 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602941862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:46 Heat of formation + Delta-G solvation = 70.608172 kcal Electronic energy + Delta-G solvation = -23588.194264 eV Core-core repulsion = 20255.374127 eV Total energy + Delta-G solvation = -3332.820137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.05702 -40.53310 -37.50832 -36.09759 -35.46784 -33.67929 -32.51914 -32.14717 -29.88602 -28.47495 -28.00959 -26.75086 -24.85143 -23.86099 -22.59257 -21.90310 -21.50477 -20.88407 -18.90327 -18.49854 -17.61116 -17.32403 -16.49343 -16.40052 -16.12243 -16.03996 -15.66603 -15.48004 -15.01138 -14.74189 -14.68975 -14.41089 -13.89938 -13.78982 -13.64269 -13.45670 -13.26769 -13.09230 -12.77162 -12.64520 -12.56056 -12.41714 -12.34169 -12.06235 -11.73317 -11.58090 -11.46351 -11.32986 -11.25303 -11.13305 -10.86000 -10.74535 -9.37666 -9.29089 -8.27990 -6.31982 0.69617 1.21974 1.37724 1.39021 1.51120 1.73749 2.37650 2.54850 2.83885 3.07583 3.43037 3.61013 3.70761 3.84140 3.84942 4.09603 4.13270 4.22399 4.24560 4.27444 4.35537 4.38055 4.44377 4.59902 4.67638 4.69652 4.71654 4.73431 4.78878 4.84313 4.93635 4.95570 4.99196 4.99810 5.04999 5.15950 5.46513 5.53647 5.55515 5.62964 5.68309 6.02465 6.09230 6.13470 6.31650 6.76643 7.32576 7.69535 8.88954 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.036376 B = 0.002642 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.561993 B =10593.824666 C =11007.475477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.180 3.820 3 N -0.335 5.335 4 N -0.362 5.362 5 C 0.352 3.648 6 N -0.448 5.448 7 C 0.062 3.938 8 C 0.058 3.942 9 N -0.553 5.553 10 C 0.068 3.932 11 C -0.088 4.088 12 C -0.010 4.010 13 C -0.531 4.531 14 H 0.029 0.971 15 C 0.000 4.000 16 N -0.954 5.954 17 Si 0.953 3.047 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.243 1.243 21 C 0.061 3.939 22 C 0.083 3.917 23 N -0.483 5.483 24 C 0.062 3.938 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.040 0.960 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.021 0.979 37 H 0.019 0.981 38 H 0.265 0.735 39 H 0.050 0.950 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.087 9.375 -15.568 28.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.089 4.089 3 N -0.174 5.174 4 N -0.207 5.207 5 C -0.006 4.006 6 N -0.173 5.173 7 C -0.065 4.065 8 C -0.071 4.071 9 N -0.278 5.278 10 C -0.060 4.060 11 C -0.126 4.126 12 C -0.048 4.048 13 C -0.569 4.569 14 H 0.048 0.952 15 C -0.196 4.196 16 N -0.595 5.595 17 Si 0.777 3.223 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.166 1.166 21 C -0.067 4.067 22 C -0.044 4.044 23 N -0.179 5.179 24 C -0.078 4.078 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.141 0.859 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.549 10.668 -15.478 28.596 hybrid contribution 0.595 -1.649 0.117 1.757 sum -20.954 9.019 -15.361 27.502 Atomic orbital electron populations 1.20437 0.80048 1.06039 1.05383 1.25686 0.98310 0.81506 1.03417 1.73871 0.96560 1.26133 1.20820 1.74494 1.13077 1.08146 1.24985 1.22809 0.85330 0.89731 1.02718 1.58981 0.98454 1.17714 1.42117 1.22460 1.00061 0.94299 0.89690 1.22196 0.88228 0.94346 1.02295 1.62143 1.02545 1.19976 1.43184 1.22059 0.91610 0.95507 0.96800 1.21288 0.97516 0.97280 0.96489 1.19498 0.95310 0.95092 0.94939 1.21518 1.06985 1.26054 1.02364 0.95245 1.26076 1.00913 0.94854 0.97783 1.70081 1.31959 1.30905 1.26519 0.85611 0.78774 0.77500 0.80457 1.19293 1.21137 1.16641 1.22218 0.97336 0.95115 0.92015 1.22045 0.86198 0.93628 1.02513 1.46313 1.04503 1.10342 1.56698 1.22544 1.04355 0.75419 1.05524 0.88179 0.88356 0.87503 0.94117 0.87407 0.92951 0.89322 0.94213 0.90239 0.93586 0.93115 0.96051 0.96299 0.92573 0.93192 0.88310 0.89024 0.93651 0.88514 0.85878 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.26 71.24 0.73 0.28 16 2 C 0.18 3.44 8.07 137.64 1.11 4.55 16 3 N -0.33 -9.54 12.18 -49.54 -0.60 -10.14 16 4 N -0.36 -11.12 11.30 -58.00 -0.66 -11.77 16 5 C 0.35 8.69 7.22 260.11 1.88 10.57 16 6 N -0.45 -10.04 4.76 -705.52 -3.35 -13.40 16 7 C 0.06 1.26 5.42 86.31 0.47 1.72 16 8 C 0.06 1.31 5.41 86.31 0.47 1.78 16 9 N -0.55 -14.37 4.71 -895.70 -4.22 -18.59 16 10 C 0.07 1.96 4.96 86.30 0.43 2.39 16 11 C -0.09 -3.31 5.09 30.60 0.16 -3.15 16 12 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 13 C -0.53 -30.66 9.66 25.60 0.25 -30.42 16 14 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 15 C 0.00 0.00 5.47 84.66 0.46 0.46 16 16 N -0.95 -60.16 13.96 21.45 0.30 -59.87 16 17 Si 0.95 43.98 27.47 68.60 1.88 45.86 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 21 C 0.06 1.34 5.61 86.31 0.48 1.82 16 22 C 0.08 1.95 4.99 86.31 0.43 2.38 16 23 N -0.48 -8.57 3.21 -538.18 -1.73 -10.30 16 24 C 0.06 0.46 9.31 127.77 1.19 1.65 16 25 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.11 0.16 7.27 -2.38 -0.02 0.14 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.11 1.58 5.32 -2.39 -0.01 1.57 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 2.17 6.34 -2.39 -0.02 2.16 16 32 H 0.04 1.10 8.12 -2.39 -0.02 1.08 16 33 H 0.08 2.22 8.03 -2.39 -0.02 2.20 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.90 6.49 -2.39 -0.02 1.89 16 36 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 37 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 38 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 1.97 8.07 -2.39 -0.02 1.95 16 41 H 0.09 2.14 8.02 -2.39 -0.02 2.12 16 42 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.10 0.45 7.79 -2.39 -0.02 0.44 16 44 H 0.12 0.14 7.25 -2.38 -0.02 0.13 16 45 H 0.10 0.73 7.63 -2.39 -0.02 0.71 16 Total: -1.00 -78.13 352.22 0.71 -77.42 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.91 Total: 7.10 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 8.17 Total: -6.32 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -10.26 Total: -124.06 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -78.13 0.71 -77.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602941862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.033 kcal (2) G-P(sol) polarization free energy of solvation -78.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds