Wall clock time and date at job start Tue Mar 31 2020 03:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32561 * 121.64535 * 2 1 4 4 S 1.77231 * 105.31794 * 179.97438 * 3 2 1 5 5 C 1.72209 * 94.84622 * 0.02562 * 4 3 2 6 6 O 1.21833 * 127.05351 * 179.97438 * 5 4 3 7 7 N 1.34245 * 105.88553 * 0.02562 * 5 4 3 8 8 C 1.46491 * 121.37722 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47602 * 89.97271 * 8 7 5 10 10 N 1.46504 * 109.47596 * 179.97438 * 9 8 7 11 11 C 1.35310 * 125.86786 * 124.71469 * 10 9 8 12 12 C 1.35349 * 106.17601 * 179.90841 * 11 10 9 13 13 C 1.50703 * 126.75561 * 180.12593 * 12 11 10 14 14 C 1.50699 * 109.47106 * 125.24289 * 13 12 11 15 15 H 1.08000 * 120.00069 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99741 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00146 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00071 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46699 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47169 * 120.00003 * 18 16 14 21 21 H 1.48500 * 109.46832 * 240.00359 * 18 16 14 22 22 N 1.33779 * 106.49520 * 0.35065 * 12 11 10 23 23 N 1.28633 * 108.88219 * 359.77445 * 22 12 11 24 24 H 1.09001 * 109.46940 * 270.02483 * 1 2 3 25 25 H 1.09003 * 109.46972 * 30.01884 * 1 2 3 26 26 H 1.08995 * 109.46841 * 150.02109 * 1 2 3 27 27 H 1.08004 * 127.34458 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.47176 * 209.97056 * 8 7 5 29 29 H 1.09002 * 109.47337 * 329.96812 * 8 7 5 30 30 H 1.09008 * 109.47313 * 299.99733 * 9 8 7 31 31 H 1.09002 * 109.47149 * 59.99426 * 9 8 7 32 32 H 1.07997 * 126.91265 * 0.02562 * 11 10 9 33 33 H 1.09000 * 109.47051 * 245.24482 * 13 12 11 34 34 H 1.09001 * 109.46479 * 5.24214 * 13 12 11 35 35 H 0.97003 * 120.00058 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 0.0008 5 6 3.5607 -1.0574 0.0003 6 8 4.3674 -1.9703 0.0001 7 7 2.2222 -1.1605 -0.0010 8 6 1.5577 -2.4660 -0.0012 9 6 1.3256 -2.9205 1.4411 10 7 0.6605 -4.2258 1.4409 11 6 1.1035 -5.3414 2.0656 12 6 0.1900 -6.3061 1.8073 13 6 0.2280 -7.7351 2.2846 14 6 -1.0545 -8.0575 3.0072 15 1 -1.8207 -7.3033 3.1102 16 6 -1.2498 -9.3154 3.5369 17 7 -0.3166 -10.2337 3.4120 18 14 -2.8398 -9.7154 4.4321 19 1 -3.7200 -8.5193 4.4361 20 1 -3.5285 -10.8352 3.7414 21 1 -2.5346 -10.1094 5.8310 22 7 -0.7507 -5.7431 1.0407 23 7 -0.4426 -4.5101 0.8418 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3633 -0.8901 -0.5135 27 1 1.8154 2.1367 0.0004 28 1 0.6000 -2.3862 -0.5156 29 1 2.1863 -3.1936 -0.5147 30 1 2.2833 -3.0003 1.9556 31 1 0.6969 -2.1929 1.9546 32 1 2.0037 -5.4413 2.6538 33 1 0.3403 -8.4011 1.4290 34 1 1.0708 -7.8693 2.9627 35 1 -0.4541 -11.1188 3.7844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603182486.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:09 Heat of formation + Delta-G solvation = 73.440473 kcal Electronic energy + Delta-G solvation = -20367.347211 eV Core-core repulsion = 17108.017912 eV Total energy + Delta-G solvation = -3259.329299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.16122 -42.13157 -38.79587 -36.64517 -35.32898 -33.48092 -32.89640 -31.60855 -29.48192 -28.56408 -26.07132 -25.47442 -24.37971 -22.75352 -21.98351 -21.23245 -19.10183 -18.83072 -18.36087 -18.10386 -17.30169 -16.89713 -16.57458 -16.19094 -15.68011 -15.60187 -15.01035 -14.77270 -14.60901 -14.48330 -14.27919 -14.15071 -13.67394 -13.27779 -12.93235 -12.73189 -12.66283 -12.47785 -12.46701 -12.10411 -11.92163 -11.70320 -11.42894 -11.29053 -11.05667 -10.65222 -10.59189 -9.92475 -9.01238 -8.19375 -6.28417 -0.20026 0.33054 0.61731 0.79741 1.02632 1.24261 1.40540 1.41775 1.54801 1.70221 1.82541 2.44245 3.13651 3.17666 3.38179 3.50470 3.64064 3.86912 3.93650 4.20044 4.27691 4.35244 4.40149 4.53720 4.66283 4.71099 4.74921 4.93580 5.25152 5.27293 5.39974 5.50947 5.64746 5.68986 5.76056 6.14254 6.20205 6.80459 7.38577 7.61596 8.91924 Molecular weight = 294.09amu Principal moments of inertia in cm(-1) A = 0.037299 B = 0.002837 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.520248 B = 9867.084831 C =10353.056001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.089 3.911 3 C -0.215 4.215 4 S 0.010 5.990 5 C 0.459 3.541 6 O -0.518 6.518 7 N -0.526 5.526 8 C 0.096 3.904 9 C 0.108 3.892 10 N -0.287 5.287 11 C -0.052 4.052 12 C -0.002 4.002 13 C 0.100 3.900 14 C -0.522 4.522 15 H 0.048 0.952 16 C 0.006 3.994 17 N -0.928 5.928 18 Si 0.964 3.036 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.272 1.272 22 N -0.299 5.299 23 N -0.105 5.105 24 H 0.098 0.902 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.230 0.770 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.217 0.783 33 H 0.009 0.991 34 H 0.032 0.968 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 28.620 -5.628 29.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.020 4.020 3 C -0.352 4.352 4 S 0.254 5.746 5 C 0.143 3.857 6 O -0.401 6.401 7 N -0.248 5.248 8 C -0.030 4.030 9 C -0.014 4.014 10 N -0.082 5.082 11 C -0.201 4.201 12 C -0.140 4.140 13 C 0.061 3.939 14 C -0.560 4.560 15 H 0.066 0.934 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.789 3.211 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.198 1.198 22 N -0.166 5.166 23 N -0.084 5.084 24 H 0.116 0.884 25 H 0.136 0.864 26 H 0.093 0.907 27 H 0.247 0.753 28 H 0.144 0.856 29 H 0.103 0.897 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.234 0.766 33 H 0.027 0.973 34 H 0.050 0.950 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.601 29.133 -6.482 30.367 hybrid contribution -0.642 -1.931 1.018 2.275 sum 4.959 27.202 -5.464 28.185 Atomic orbital electron populations 1.20985 0.84168 1.05837 1.05291 1.19965 0.97177 0.83842 1.01015 1.25471 0.90820 1.02685 1.16241 1.85278 1.10843 0.98456 1.80046 1.22109 0.84021 0.96682 0.82904 1.90981 1.49864 1.44208 1.55050 1.46016 1.05941 1.07852 1.64966 1.21952 1.00981 0.83610 0.96496 1.22487 0.99727 0.80087 0.99088 1.47201 1.16409 1.10908 1.33721 1.23711 1.04471 0.85877 1.06084 1.22612 0.92366 0.99634 0.99340 1.17410 0.97391 0.84214 0.94838 1.21304 1.02280 0.97428 1.35037 0.93404 1.25828 1.00264 0.95969 0.97103 1.70057 1.35294 1.04644 1.46883 0.85414 0.79277 0.78098 0.78339 1.19542 1.20267 1.19773 1.74992 1.24682 0.99953 1.16973 1.78005 1.01147 1.10938 1.18284 0.88369 0.86443 0.90706 0.75305 0.85630 0.89745 0.86409 0.85430 0.76647 0.97297 0.94998 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 9.70 71.24 0.69 0.21 16 2 C 0.09 0.86 6.59 40.72 0.27 1.13 16 3 C -0.22 -1.62 11.24 66.67 0.75 -0.87 16 4 S 0.01 0.16 22.97 -56.49 -1.30 -1.14 16 5 C 0.46 9.93 8.27 129.87 1.07 11.00 16 6 O -0.52 -15.51 17.55 -4.77 -0.08 -15.59 16 7 N -0.53 -8.47 2.60 -643.43 -1.68 -10.15 16 8 C 0.10 1.72 5.39 86.38 0.47 2.19 16 9 C 0.11 2.01 6.78 86.38 0.59 2.60 16 10 N -0.29 -8.56 3.44 -347.73 -1.20 -9.75 16 11 C -0.05 -1.81 11.49 83.49 0.96 -0.85 16 12 C 0.00 -0.09 6.44 41.60 0.27 0.17 16 13 C 0.10 5.41 5.55 29.10 0.16 5.58 16 14 C -0.52 -30.67 9.09 25.60 0.23 -30.43 16 15 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 16 C 0.01 0.37 5.46 84.65 0.46 0.83 16 17 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 18 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 N -0.30 -13.92 12.40 -48.59 -0.60 -14.52 16 23 N -0.10 -3.87 12.91 37.02 0.48 -3.39 16 24 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.12 -0.01 8.10 -2.39 -0.02 -0.03 16 26 H 0.07 0.51 6.19 -2.39 -0.01 0.50 16 27 H 0.23 -0.01 8.06 -2.91 -0.02 -0.04 16 28 H 0.13 1.97 6.10 -2.38 -0.01 1.96 16 29 H 0.08 1.91 7.80 -2.39 -0.02 1.89 16 30 H 0.12 2.02 8.07 -2.38 -0.02 2.00 16 31 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.22 5.87 8.06 -2.91 -0.02 5.84 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.03 1.71 8.12 -2.39 -0.02 1.69 16 35 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -78.19 323.00 4.97 -73.22 By element: Atomic # 1 Polarization: -3.09 SS G_CDS: 1.12 Total: -1.98 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 5.92 Total: -8.44 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -2.71 Total: -93.42 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.08 Total: -15.59 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.30 Total: -1.14 kcal Total: -78.19 4.97 -73.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603182486.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.659 kcal (2) G-P(sol) polarization free energy of solvation -78.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds