Wall clock time and date at job start Tue Mar 31 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29312 * 1 3 3 Si 1.86809 * 120.00057 * 2 1 4 4 H 1.48503 * 109.46808 * 269.99805 * 3 2 1 5 5 H 1.48495 * 109.47077 * 29.99433 * 3 2 1 6 6 H 1.48497 * 109.47075 * 150.00016 * 3 2 1 7 7 C 1.46795 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99379 * 0.02562 * 7 2 1 9 9 N 1.33310 * 120.00239 * 180.02562 * 7 2 1 10 10 C 1.34774 * 119.99758 * 180.02562 * 9 7 2 11 11 O 1.21509 * 120.00263 * 0.02562 * 10 9 7 12 12 C 1.47374 * 119.99834 * 180.02562 * 10 9 7 13 13 C 1.39871 * 120.15008 * 359.97438 * 12 10 9 14 14 C 1.37706 * 119.93973 * 180.02562 * 13 12 10 15 15 N 1.48017 * 119.82414 * 180.08170 * 14 13 12 16 16 O 1.31700 * 119.99822 * 179.97438 * 15 14 13 17 17 O 1.31694 * 120.00496 * 359.97287 * 15 14 13 18 18 C 1.38522 * 120.34495 * 0.05814 * 14 13 12 19 19 C 1.38590 * 120.43499 * 0.02562 * 18 14 13 20 20 C 1.38986 * 119.90777 * 359.86261 * 19 18 14 21 21 O 1.35794 * 120.87459 * 180.37334 * 20 19 18 22 22 C 1.43176 * 116.73633 * 342.72396 * 21 20 19 23 23 C 1.53483 * 108.22900 * 46.21215 * 22 21 20 24 24 O 1.36145 * 119.37001 * 179.84246 * 19 18 14 25 25 H 0.97003 * 120.00144 * 0.02562 * 1 2 3 26 26 H 0.96997 * 119.99840 * 359.97438 * 9 7 2 27 27 H 1.07996 * 120.03260 * 0.06494 * 13 12 10 28 28 H 1.08007 * 119.78306 * 179.97438 * 18 14 13 29 29 H 1.08994 * 109.70948 * 165.88546 * 22 21 20 30 30 H 1.08995 * 109.71198 * 286.47747 * 22 21 20 31 31 H 1.08991 * 109.71279 * 180.61900 * 23 22 21 32 32 H 1.09001 * 109.70886 * 59.99003 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2272 1.6178 0.0000 4 1 2.4747 2.0464 -1.4001 5 1 1.4246 2.6527 0.6999 6 1 3.5247 1.4402 0.7000 7 6 2.0272 -1.2712 0.0006 8 1 1.4871 -2.2065 0.0006 9 7 3.3603 -1.2712 0.0011 10 6 4.0341 -2.4384 0.0011 11 8 3.4265 -3.4907 0.0001 12 6 5.5078 -2.4385 0.0022 13 6 6.2104 -1.2290 0.0028 14 6 7.5874 -1.2340 0.0033 15 7 8.3283 0.0474 0.0057 16 8 9.6453 0.0465 0.0067 17 8 7.6706 1.1883 0.0068 18 6 8.2828 -2.4320 0.0021 19 6 7.6018 -3.6391 -0.0002 20 6 6.2120 -3.6507 0.0016 21 8 5.5249 -4.8219 0.0070 22 6 6.2517 -5.9968 -0.3691 23 6 7.5957 -5.9877 0.3720 24 8 8.3071 -4.8036 -0.0046 25 1 -0.4850 0.8401 -0.0004 26 1 3.8452 -0.4312 0.0007 27 1 5.6734 -0.2920 0.0034 28 1 9.3629 -2.4254 0.0021 29 1 5.6844 -6.8848 -0.0906 30 1 6.4244 -5.9935 -1.4453 31 1 8.1746 -6.8684 0.0941 32 1 7.4221 -5.9857 1.4481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608959762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:10 Heat of formation + Delta-G solvation = -57.898385 kcal Electronic energy + Delta-G solvation = -23385.971859 eV Core-core repulsion = 19510.068563 eV Total energy + Delta-G solvation = -3875.903296 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.82552 -40.77764 -40.29341 -38.60470 -38.30191 -36.14755 -35.64716 -34.32995 -32.85150 -32.55474 -30.24307 -27.80162 -27.25455 -25.65738 -24.75402 -22.29126 -21.63401 -21.20351 -20.05466 -19.44566 -19.32144 -18.33353 -17.92876 -17.59659 -17.26885 -16.89182 -16.71452 -16.21253 -15.77945 -15.63348 -15.39599 -15.18355 -15.12909 -14.54227 -14.41315 -13.99510 -13.67042 -13.09592 -12.76547 -12.62710 -12.57021 -12.40241 -12.15671 -12.06640 -11.93695 -11.85856 -11.66242 -10.59988 -10.57445 -10.30873 -9.73671 -8.71984 -5.89987 -1.92760 -0.69053 -0.17716 -0.14176 1.23193 1.28570 1.36965 1.49475 1.75652 1.92089 2.06021 2.29408 2.43812 2.96566 3.03508 3.19497 3.33958 3.42380 3.53714 3.85829 3.96774 4.00190 4.19879 4.24604 4.38182 4.43264 4.55644 4.57115 4.83746 5.10633 5.51556 5.57080 5.84021 5.99376 6.21937 6.77460 7.20227 7.87500 8.40650 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.006379 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.816174 B = 4388.636611 C = 6433.724442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.017 3.983 3 Si 0.944 3.056 4 H -0.248 1.248 5 H -0.255 1.255 6 H -0.237 1.237 7 C -0.373 4.373 8 H 0.069 0.931 9 N -0.530 5.530 10 C 0.446 3.554 11 O -0.608 6.608 12 C -0.112 4.112 13 C -0.034 4.034 14 C -0.010 4.010 15 N -0.005 5.005 16 O -0.155 6.155 17 O -0.214 6.214 18 C -0.029 4.029 19 C 0.060 3.940 20 C 0.153 3.847 21 O -0.283 6.283 22 C -0.004 4.004 23 C 0.019 3.981 24 O -0.293 6.293 25 H 0.298 0.702 26 H 0.384 0.616 27 H 0.159 0.841 28 H 0.194 0.806 29 H 0.154 0.846 30 H 0.093 0.907 31 H 0.175 0.825 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.246 -7.616 0.043 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.195 4.195 3 Si 0.761 3.239 4 H -0.172 1.172 5 H -0.179 1.179 6 H -0.160 1.160 7 C -0.503 4.503 8 H 0.087 0.913 9 N -0.165 5.165 10 C 0.237 3.763 11 O -0.496 6.496 12 C -0.118 4.118 13 C -0.055 4.055 14 C -0.097 4.097 15 N 0.470 4.530 16 O -0.356 6.356 17 O -0.396 6.396 18 C -0.049 4.049 19 C 0.013 3.987 20 C 0.102 3.898 21 O -0.194 6.194 22 C -0.078 4.078 23 C -0.055 4.055 24 O -0.207 6.207 25 H 0.110 0.890 26 H 0.219 0.781 27 H 0.176 0.824 28 H 0.211 0.789 29 H 0.172 0.828 30 H 0.111 0.889 31 H 0.193 0.807 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.138 -8.777 0.045 19.255 hybrid contribution -0.244 1.219 -0.006 1.243 sum 16.894 -7.558 0.039 18.508 Atomic orbital electron populations 1.68690 1.09451 1.31485 1.39839 1.27586 0.95896 1.01909 0.94070 0.85691 0.80199 0.76861 0.81100 1.17201 1.17912 1.16043 1.19973 0.81471 0.94472 1.54383 0.91274 1.40872 1.06432 1.07259 1.61887 1.17377 0.86097 0.84196 0.88628 1.90623 1.69258 1.31438 1.58293 1.19278 0.93622 0.90645 1.08245 1.20906 0.91544 0.98835 0.94264 1.19499 0.90418 0.81585 1.18245 1.50360 1.02956 1.04155 0.95490 1.96226 0.89039 1.96199 1.54097 1.96316 1.68823 1.16235 1.58276 1.20227 1.03268 0.85924 0.95505 1.18066 0.87150 0.88373 1.05137 1.19334 0.89707 0.87267 0.93521 1.86735 1.38093 1.13780 1.80783 1.24359 0.94772 0.87196 1.01494 1.24167 0.93528 0.87031 1.00791 1.86369 1.36920 1.13209 1.84230 0.88965 0.78057 0.82353 0.78924 0.82822 0.88882 0.80744 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.33 13.88 23.26 0.32 -47.01 16 2 C 0.02 0.89 5.70 87.30 0.50 1.39 16 3 Si 0.94 36.90 27.87 68.60 1.91 38.81 16 4 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 5 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 6 H -0.24 -8.40 6.61 99.48 0.66 -7.75 16 7 C -0.37 -21.28 10.43 86.71 0.90 -20.38 16 8 H 0.07 4.64 7.31 -2.91 -0.02 4.62 16 9 N -0.53 -25.85 4.97 -306.09 -1.52 -27.37 16 10 C 0.45 21.52 7.69 86.65 0.67 22.19 16 11 O -0.61 -34.33 14.62 17.44 0.25 -34.07 16 12 C -0.11 -4.15 5.89 -20.00 -0.12 -4.27 16 13 C -0.03 -1.09 9.06 22.54 0.20 -0.89 16 14 C -0.01 -0.28 6.87 36.32 0.25 -0.03 16 15 N -0.01 -0.16 4.98 -46.60 -0.23 -0.39 16 16 O -0.16 -4.56 19.13 3.52 0.07 -4.49 16 17 O -0.21 -7.34 19.13 3.52 0.07 -7.27 16 18 C -0.03 -0.67 9.48 22.42 0.21 -0.45 16 19 C 0.06 1.44 6.49 22.53 0.15 1.59 16 20 C 0.15 4.84 6.51 22.92 0.15 4.99 16 21 O -0.28 -9.17 8.42 -64.24 -0.54 -9.71 16 22 C 0.00 -0.07 7.26 72.14 0.52 0.45 16 23 C 0.02 0.23 7.26 72.14 0.52 0.75 16 24 O -0.29 -5.39 10.42 -82.93 -0.86 -6.25 16 25 H 0.30 14.55 8.26 -92.71 -0.77 13.79 16 26 H 0.38 16.05 3.97 -92.71 -0.37 15.68 16 27 H 0.16 4.97 5.90 -2.91 -0.02 4.96 16 28 H 0.19 3.39 7.56 -2.91 -0.02 3.37 16 29 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.18 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -74.41 292.44 4.22 -70.19 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.80 Total: 22.25 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 3.96 Total: 5.32 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -1.43 Total: -74.77 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -1.02 Total: -61.80 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 1.91 Total: 38.81 kcal Total: -74.41 4.22 -70.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608959762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.292 kcal (2) G-P(sol) polarization free energy of solvation -74.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds