Wall clock time and date at job start Tue Mar 31 2020 04:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34224 * 116.99939 * 2 1 4 4 O 1.20829 * 120.00297 * 359.97438 * 3 2 1 5 5 C 1.50705 * 120.00025 * 179.97438 * 3 2 1 6 6 N 1.46491 * 109.47245 * 179.97438 * 5 3 2 7 7 C 1.36794 * 120.00084 * 264.56275 * 6 5 3 8 8 H 1.07996 * 120.00079 * 131.98317 * 7 6 5 9 9 C 1.39110 * 119.99728 * 311.98488 * 7 6 5 10 10 N 1.31326 * 120.00019 * 3.26252 * 9 7 6 11 11 Si 1.86793 * 119.99866 * 183.26757 * 9 7 6 12 12 H 1.48498 * 109.47268 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47320 * 120.00169 * 11 9 7 14 14 H 1.48510 * 109.47046 * 239.99837 * 11 9 7 15 15 C 1.34779 * 120.00650 * 84.55906 * 6 5 3 16 16 O 1.21570 * 119.99204 * 4.84012 * 15 6 5 17 17 C 1.48018 * 120.00625 * 184.83416 * 15 6 5 18 18 C 1.39209 * 119.70651 * 174.18193 * 17 15 6 19 19 C 1.39189 * 118.97384 * 179.72436 * 18 17 15 20 20 O 1.35747 * 120.80239 * 180.29662 * 19 18 17 21 21 C 1.42904 * 116.99602 * 179.97438 * 20 19 18 22 22 C 1.39248 * 118.38457 * 0.27635 * 19 18 17 23 23 C 1.38307 * 119.30177 * 359.97438 * 22 19 18 24 24 N 1.31621 * 120.98225 * 0.02562 * 23 22 19 25 25 H 1.08992 * 109.46963 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46875 * 300.00793 * 1 2 3 27 27 H 1.09002 * 109.46414 * 60.00070 * 1 2 3 28 28 H 1.09000 * 109.46823 * 59.99433 * 5 3 2 29 29 H 1.08998 * 109.46675 * 300.00080 * 5 3 2 30 30 H 0.96998 * 120.00098 * 180.02562 * 10 9 7 31 31 H 1.08002 * 120.51225 * 359.97438 * 18 17 15 32 32 H 1.08997 * 109.47205 * 300.00598 * 21 20 19 33 33 H 1.09005 * 109.47023 * 60.00367 * 21 20 19 34 34 H 1.08996 * 109.47454 * 180.02562 * 21 20 19 35 35 H 1.07993 * 120.35149 * 179.97438 * 22 19 18 36 36 H 1.08003 * 119.50580 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.2839 3.3030 -1.1798 8 1 3.8645 4.2734 -1.4006 9 6 5.1312 2.6868 -2.0949 10 7 5.5900 1.4798 -1.8555 11 14 5.6166 3.5763 -3.6641 12 1 4.9700 4.9127 -3.6958 13 1 7.0922 3.7386 -3.7050 14 1 5.1730 2.7843 -4.8395 15 6 4.0663 3.3581 1.1613 16 8 3.8837 2.7822 2.2162 17 6 4.3815 4.8043 1.1525 18 6 4.3480 5.5249 2.3431 19 6 4.6527 6.8828 2.3182 20 8 4.6373 7.6198 3.4581 21 6 4.9637 9.0059 3.3389 22 6 4.9742 7.4668 1.0956 23 6 4.9813 6.6864 -0.0462 24 7 4.6888 5.4042 0.0076 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 3.9565 0.7805 -0.8891 29 1 3.9557 0.7809 0.8908 30 1 6.1811 1.0502 -2.4935 31 1 4.0935 5.0370 3.2724 32 1 5.9717 9.1086 2.9373 33 1 4.2541 9.4898 2.6676 34 1 4.9144 9.4766 4.3208 35 1 5.2154 8.5179 1.0396 36 1 5.2298 7.1360 -0.9963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609992136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:16 Heat of formation + Delta-G solvation = -111.452896 kcal Electronic energy + Delta-G solvation = -23868.515946 eV Core-core repulsion = 20126.123447 eV Total energy + Delta-G solvation = -3742.392499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.85167 -41.37555 -40.19827 -38.82851 -37.49878 -36.71384 -33.51451 -32.50671 -32.43910 -30.26482 -28.46767 -27.93454 -26.76555 -24.65106 -24.22148 -22.37040 -21.32704 -20.07915 -18.72894 -18.50228 -18.30405 -17.46400 -17.27916 -17.01627 -16.79269 -16.47524 -16.41737 -15.99484 -15.66102 -15.34722 -14.85277 -14.60334 -14.49483 -14.38247 -13.94746 -13.41330 -13.24959 -13.01755 -12.98892 -12.87179 -12.54020 -12.42694 -12.17632 -11.94806 -11.78481 -11.57003 -11.12034 -10.95895 -10.20428 -10.06846 -9.84293 -9.37358 -8.24065 -6.04645 -0.25796 0.40591 1.24769 1.49471 1.51483 1.58198 1.67404 2.03689 2.14224 2.42732 2.81112 3.00911 3.19697 3.57454 3.74214 3.94511 4.06881 4.15984 4.28373 4.32085 4.32890 4.39950 4.42331 4.52253 4.63134 4.64671 4.78195 4.86854 4.96247 5.02179 5.33143 5.48492 5.74313 5.86329 6.25557 6.56491 6.80010 7.00849 7.19805 7.40543 7.82559 8.80456 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.006152 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.928614 B = 4550.346084 C = 6101.770670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.452 3.548 4 O -0.537 6.537 5 C 0.113 3.887 6 N -0.412 5.412 7 C -0.303 4.303 8 H 0.115 0.885 9 C -0.004 4.004 10 N -0.911 5.911 11 Si 0.991 3.009 12 H -0.252 1.252 13 H -0.279 1.279 14 H -0.281 1.281 15 C 0.510 3.490 16 O -0.622 6.622 17 C 0.119 3.881 18 C -0.175 4.175 19 C 0.156 3.844 20 O -0.328 6.328 21 C 0.013 3.987 22 C -0.231 4.231 23 C 0.112 3.888 24 N -0.460 5.460 25 H 0.140 0.860 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.154 0.846 29 H 0.094 0.906 30 H 0.275 0.725 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.184 0.816 36 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 10.469 1.761 10.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.296 3.704 4 O -0.427 6.427 5 C -0.012 4.012 6 N -0.128 5.128 7 C -0.432 4.432 8 H 0.132 0.868 9 C -0.204 4.204 10 N -0.550 5.550 11 Si 0.814 3.186 12 H -0.175 1.175 13 H -0.205 1.205 14 H -0.207 1.207 15 C 0.301 3.699 16 O -0.509 6.509 17 C -0.018 4.018 18 C -0.197 4.197 19 C 0.103 3.897 20 O -0.240 6.240 21 C -0.080 4.080 22 C -0.251 4.251 23 C -0.047 4.047 24 N -0.174 5.174 25 H 0.158 0.842 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.170 0.830 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.149 0.851 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.141 0.859 35 H 0.201 0.799 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.775 9.754 1.643 10.050 hybrid contribution 0.030 0.536 0.148 0.557 sum -1.745 10.290 1.791 10.589 Atomic orbital electron populations 1.23534 0.75174 1.05742 1.02067 1.86513 1.24946 1.32581 1.84089 1.25030 0.93275 0.81366 0.70763 1.90551 1.67631 1.37562 1.46922 1.21281 0.85050 0.87549 1.07345 1.43163 1.54578 1.08738 1.06283 1.20273 1.25672 1.03736 0.93493 0.86797 1.26406 0.94748 0.96336 1.02883 1.69629 1.33061 1.14124 1.38210 0.84892 0.77900 0.79302 0.76492 1.17514 1.20509 1.20732 1.18647 0.80546 0.87101 0.83654 1.90575 1.57990 1.70259 1.32093 1.20667 0.97941 0.93749 0.89434 1.21285 1.06012 0.93011 0.99417 1.19068 0.93546 0.90134 0.86945 1.86059 1.84412 1.24530 1.29043 1.23515 1.01731 0.76690 1.06079 1.22701 1.06995 1.03797 0.91651 1.23538 0.92669 0.88724 0.99796 1.68663 1.10787 1.11640 1.26300 0.84223 0.92650 0.92276 0.82960 0.88782 0.91538 0.85074 0.90847 0.90871 0.85857 0.79924 0.79166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.56 113.37 1.20 2.02 16 2 O -0.37 -14.55 10.57 -51.35 -0.54 -15.09 16 3 C 0.45 21.84 7.99 71.24 0.57 22.41 16 4 O -0.54 -28.50 16.06 21.95 0.35 -28.15 16 5 C 0.11 5.76 5.48 85.64 0.47 6.23 16 6 N -0.41 -22.54 2.04 -642.72 -1.31 -23.86 16 7 C -0.30 -16.16 7.47 84.13 0.63 -15.53 16 8 H 0.11 6.07 5.96 -2.91 -0.02 6.06 16 9 C 0.00 -0.18 5.35 84.98 0.45 0.27 16 10 N -0.91 -47.96 10.99 21.69 0.24 -47.72 16 11 Si 0.99 40.42 29.55 68.60 2.03 42.45 16 12 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 13 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 14 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 15 C 0.51 28.08 7.42 86.84 0.64 28.73 16 16 O -0.62 -36.02 15.98 -3.94 -0.06 -36.09 16 17 C 0.12 5.65 6.66 41.82 0.28 5.92 16 18 C -0.17 -7.23 9.60 22.73 0.22 -7.01 16 19 C 0.16 4.99 6.73 22.74 0.15 5.15 16 20 O -0.33 -8.81 10.51 -90.72 -0.95 -9.77 16 21 C 0.01 0.19 9.84 113.37 1.12 1.31 16 22 C -0.23 -5.98 9.12 22.53 0.21 -5.78 16 23 C 0.11 3.50 11.17 84.74 0.95 4.45 16 24 N -0.46 -19.90 6.36 -185.17 -1.18 -21.08 16 25 H 0.14 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 27 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 28 H 0.15 7.94 5.51 -2.39 -0.01 7.93 16 29 H 0.09 4.79 7.53 -2.39 -0.02 4.77 16 30 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.13 5.64 7.65 -2.91 -0.02 5.62 16 32 H 0.07 0.84 7.71 -2.39 -0.02 0.82 16 33 H 0.07 0.83 7.71 -2.38 -0.02 0.81 16 34 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.18 2.84 6.45 -2.91 -0.02 2.82 16 36 H 0.19 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -74.46 318.17 6.57 -67.89 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 1.12 Total: 23.24 kcal Atomic # 6 Polarization: 41.29 SS G_CDS: 6.88 Total: 48.17 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -2.25 Total: -92.66 kcal Atomic # 8 Polarization: -87.89 SS G_CDS: -1.21 Total: -89.09 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -74.46 6.57 -67.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609992136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.560 kcal (2) G-P(sol) polarization free energy of solvation -74.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds