Wall clock time and date at job start Tue Mar 31 2020 03:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86798 * 120.00108 * 2 1 4 4 H 1.48494 * 109.47500 * 270.29106 * 3 2 1 5 5 H 1.48503 * 109.47254 * 30.29275 * 3 2 1 6 6 H 1.48504 * 109.47076 * 150.28638 * 3 2 1 7 7 C 1.40029 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00451 * 342.48741 * 7 2 1 9 9 C 1.41548 * 119.99857 * 162.48915 * 7 2 1 10 10 C 1.41178 * 120.99212 * 151.76096 * 9 7 2 11 11 C 1.37586 * 119.00923 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.11389 * 0.02562 * 11 10 9 13 13 C 1.32465 * 122.23408 * 359.97438 * 12 11 10 14 14 N 1.39469 * 119.58369 * 180.27626 * 13 12 11 15 15 C 1.34778 * 119.99735 * 5.17709 * 14 13 12 16 16 O 1.21278 * 120.00007 * 5.18602 * 15 14 13 17 17 C 1.50696 * 119.99679 * 185.18066 * 15 14 13 18 18 O 1.42903 * 108.83266 * 32.07618 * 17 15 14 19 19 C 1.52337 * 108.86767 * 150.47167 * 17 15 14 20 20 C 1.54258 * 112.58597 * 120.81875 * 19 17 15 21 21 S 1.83953 * 102.58372 * 24.52908 * 20 19 17 22 22 C 1.54266 * 108.86787 * 273.54616 * 17 15 14 23 23 C 1.38599 * 120.83660 * 0.02562 * 13 12 11 24 24 H 0.96998 * 119.99761 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.49431 * 0.04391 * 10 9 7 26 26 H 1.08005 * 119.43839 * 179.97438 * 11 10 9 27 27 H 0.96998 * 120.00181 * 185.17541 * 14 13 12 28 28 H 0.96700 * 113.99746 * 300.69926 * 18 17 15 29 29 H 1.09005 * 108.86460 * 241.63813 * 19 17 15 30 30 H 1.08999 * 108.86479 * 0.02562 * 19 17 15 31 31 H 1.09000 * 110.79006 * 266.25234 * 20 19 17 32 32 H 1.09006 * 110.94739 * 142.88299 * 20 19 17 33 33 H 1.08996 * 110.78537 * 332.92727 * 22 17 15 34 34 H 1.08997 * 110.78445 * 96.19576 * 22 17 15 35 35 H 1.08005 * 120.60375 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4828 2.0500 -1.4000 5 1 1.4420 2.6509 0.7062 6 1 3.5420 1.4384 0.6940 7 6 2.0075 -1.2127 -0.0005 8 1 1.5051 -2.1265 0.2805 9 6 3.3738 -1.2410 -0.3694 10 6 4.2461 -2.2235 0.1472 11 6 5.5667 -2.2125 -0.2385 12 7 6.0249 -1.3020 -1.0783 13 6 5.2483 -0.3593 -1.5911 14 7 5.7892 0.5714 -2.4778 15 6 7.0666 0.4470 -2.8891 16 8 7.7166 -0.5239 -2.5639 17 6 7.6872 1.5142 -3.7533 18 8 7.1186 2.7782 -3.4052 19 6 9.1853 1.5594 -3.4808 20 6 10.0261 1.2914 -4.7460 21 16 8.8806 1.7812 -6.0995 22 6 7.3627 1.2111 -5.2307 23 6 3.9039 -0.2894 -1.2616 24 1 -0.4850 0.8401 0.0004 25 1 3.8821 -2.9727 0.8346 26 1 6.2402 -2.9607 0.1528 27 1 5.2460 1.3083 -2.7985 28 1 6.1591 2.8220 -3.5172 29 1 9.4427 2.5432 -3.0883 30 1 9.4298 0.8080 -2.7299 31 1 10.2853 0.2354 -4.8218 32 1 10.9236 1.9100 -4.7558 33 1 7.2088 0.1426 -5.3815 34 1 6.4903 1.7762 -5.5589 35 1 3.2740 0.4805 -1.6823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611223864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:43 Heat of formation + Delta-G solvation = -38.504062 kcal Electronic energy + Delta-G solvation = -21332.627367 eV Core-core repulsion = 18036.151038 eV Total energy + Delta-G solvation = -3296.476330 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.64701 -38.70642 -37.11407 -34.89730 -34.00373 -33.47468 -31.41937 -29.91413 -28.88723 -26.16876 -25.81965 -23.10016 -22.52200 -20.79188 -19.76766 -18.84071 -17.93333 -16.96504 -16.38837 -16.17398 -15.67941 -15.19393 -15.07336 -14.60460 -14.35899 -14.19654 -14.01465 -13.23533 -13.05816 -12.96457 -12.78893 -12.72578 -12.39061 -12.21297 -11.77547 -11.41441 -11.16266 -11.06030 -10.91635 -10.82778 -10.48725 -10.17260 -9.95637 -9.57599 -9.38077 -8.35632 -8.04093 -7.93307 -7.42615 -7.17480 -4.84048 1.52529 1.87573 2.12531 2.50748 2.81227 2.93613 3.02240 3.09823 3.17297 3.76481 3.77743 4.09304 4.37279 4.45897 4.47697 4.79725 4.84678 4.99870 5.21025 5.29191 5.41350 5.61342 5.67174 5.80105 6.16083 6.17670 6.30917 6.45096 6.82949 6.97826 7.04020 7.11242 7.41183 7.57838 7.86398 8.08449 8.25924 8.40581 8.54449 9.30148 9.83585 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.024393 B = 0.004474 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.607218 B = 6257.092357 C = 6954.266373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.085 3.915 3 Si 0.920 3.080 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.248 1.248 7 C -0.436 4.436 8 H 0.096 0.904 9 C 0.127 3.873 10 C -0.270 4.270 11 C 0.129 3.871 12 N -0.558 5.558 13 C 0.367 3.633 14 N -0.657 5.657 15 C 0.482 3.518 16 O -0.461 6.461 17 C 0.125 3.875 18 O -0.537 6.537 19 C -0.115 4.115 20 C -0.061 4.061 21 S -0.276 6.276 22 C -0.093 4.093 23 C -0.323 4.323 24 H 0.289 0.711 25 H 0.111 0.889 26 H 0.131 0.869 27 H 0.404 0.596 28 H 0.377 0.623 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.020 6.109 -7.576 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.171 1.171 7 C -0.466 4.466 8 H 0.114 0.886 9 C 0.119 3.881 10 C -0.293 4.293 11 C -0.023 4.023 12 N -0.278 5.278 13 C 0.140 3.860 14 N -0.304 5.304 15 C 0.264 3.736 16 O -0.330 6.330 17 C 0.079 3.921 18 O -0.344 6.344 19 C -0.154 4.154 20 C -0.209 4.209 21 S -0.049 6.049 22 C -0.242 4.242 23 C -0.349 4.349 24 H 0.100 0.900 25 H 0.129 0.871 26 H 0.148 0.852 27 H 0.239 0.761 28 H 0.226 0.774 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.997 6.143 -8.555 16.728 hybrid contribution -2.006 0.488 0.990 2.289 sum 10.991 6.631 -7.565 14.900 Atomic orbital electron populations 1.69642 1.08173 1.30743 1.33263 1.26221 0.94764 1.01980 0.90632 0.86220 0.80810 0.79324 0.78926 1.19611 1.21631 1.17122 1.19530 0.92426 0.96306 1.38298 0.88569 1.17673 0.93079 0.89511 0.87853 1.21926 0.94421 1.05383 1.07573 1.21886 0.93423 0.94508 0.92475 1.67231 1.37352 1.06705 1.16498 1.17955 0.88694 0.89349 0.90004 1.43446 1.12945 1.28577 1.45388 1.21213 0.82363 0.88328 0.81715 1.90801 1.60140 1.29774 1.52290 1.22097 0.95477 0.82877 0.91682 1.86736 1.26257 1.31996 1.89372 1.21884 0.88519 1.05986 0.99019 1.24175 0.99376 1.05175 0.92149 1.87920 1.04419 1.82360 1.30247 1.24883 0.99430 1.05742 0.94171 1.21305 0.93772 1.09000 1.10807 0.90028 0.87081 0.85157 0.76067 0.77394 0.88421 0.87465 0.88495 0.87085 0.87781 0.86412 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.76 13.92 55.55 0.77 -18.99 16 2 C 0.09 2.09 5.44 -17.34 -0.09 1.99 16 3 Si 0.92 19.33 24.53 -169.99 -4.17 15.16 16 4 H -0.27 -5.20 6.45 56.52 0.36 -4.84 16 5 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.25 -5.50 7.00 56.52 0.40 -5.10 16 7 C -0.44 -11.10 9.64 -37.65 -0.36 -11.46 16 8 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.13 3.09 5.17 -106.55 -0.55 2.54 16 10 C -0.27 -6.08 9.90 -38.70 -0.38 -6.46 16 11 C 0.13 2.80 11.15 -17.68 -0.20 2.61 16 12 N -0.56 -12.92 7.89 -12.52 -0.10 -13.02 16 13 C 0.37 8.00 7.40 -154.71 -1.15 6.85 16 14 N -0.66 -11.21 5.25 -11.49 -0.06 -11.27 16 15 C 0.48 7.94 6.38 -10.99 -0.07 7.86 16 16 O -0.46 -9.29 13.83 5.56 0.08 -9.21 16 17 C 0.12 1.55 1.17 -91.45 -0.11 1.44 16 18 O -0.54 -6.11 12.56 -35.23 -0.44 -6.55 16 19 C -0.12 -1.34 5.68 -26.41 -0.15 -1.49 16 20 C -0.06 -0.60 7.46 37.82 0.28 -0.32 16 21 S -0.28 -3.16 23.27 -107.50 -2.50 -5.66 16 22 C -0.09 -1.02 6.59 37.82 0.25 -0.77 16 23 C -0.32 -7.35 7.20 -38.48 -0.28 -7.63 16 24 H 0.29 6.46 8.29 -40.82 -0.34 6.12 16 25 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 26 H 0.13 2.43 8.06 -52.48 -0.42 2.01 16 27 H 0.40 5.34 7.13 -40.82 -0.29 5.05 16 28 H 0.38 2.98 7.38 45.56 0.34 3.31 16 29 H 0.10 1.08 7.83 -51.93 -0.41 0.67 16 30 H 0.11 1.41 6.56 -51.93 -0.34 1.07 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.21 7.85 -51.93 -0.41 0.80 16 34 H 0.12 1.04 7.96 -51.93 -0.41 0.63 16 35 H 0.11 2.39 4.43 -52.48 -0.23 2.16 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -30.74 302.87 -7.71 -38.45 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -3.05 Total: 11.37 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.81 Total: -4.85 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.61 Total: -43.28 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.37 Total: -15.76 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.17 Total: 15.16 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.50 Total: -5.66 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.74 -7.71 -38.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611223864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.056 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds