Wall clock time and date at job start Tue Mar 31 2020 03:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86798 * 120.00108 * 2 1 4 4 H 1.48494 * 109.47500 * 270.29106 * 3 2 1 5 5 H 1.48503 * 109.47254 * 30.29275 * 3 2 1 6 6 H 1.48504 * 109.47076 * 150.28638 * 3 2 1 7 7 C 1.40029 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00451 * 342.48741 * 7 2 1 9 9 C 1.41548 * 119.99857 * 162.48915 * 7 2 1 10 10 C 1.41178 * 120.99212 * 151.76096 * 9 7 2 11 11 C 1.37586 * 119.00923 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.11389 * 0.02562 * 11 10 9 13 13 C 1.32465 * 122.23408 * 359.97438 * 12 11 10 14 14 N 1.39469 * 119.58369 * 180.27626 * 13 12 11 15 15 C 1.34778 * 119.99735 * 5.17709 * 14 13 12 16 16 O 1.21278 * 120.00007 * 5.18602 * 15 14 13 17 17 C 1.50696 * 119.99679 * 185.18066 * 15 14 13 18 18 O 1.42903 * 108.83266 * 32.07618 * 17 15 14 19 19 C 1.52337 * 108.86767 * 150.47167 * 17 15 14 20 20 C 1.54258 * 112.58597 * 120.81875 * 19 17 15 21 21 S 1.83953 * 102.58372 * 24.52908 * 20 19 17 22 22 C 1.54266 * 108.86787 * 273.54616 * 17 15 14 23 23 C 1.38599 * 120.83660 * 0.02562 * 13 12 11 24 24 H 0.96998 * 119.99761 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.49431 * 0.04391 * 10 9 7 26 26 H 1.08005 * 119.43839 * 179.97438 * 11 10 9 27 27 H 0.96998 * 120.00181 * 185.17541 * 14 13 12 28 28 H 0.96700 * 113.99746 * 300.69926 * 18 17 15 29 29 H 1.09005 * 108.86460 * 241.63813 * 19 17 15 30 30 H 1.08999 * 108.86479 * 0.02562 * 19 17 15 31 31 H 1.09000 * 110.79006 * 266.25234 * 20 19 17 32 32 H 1.09006 * 110.94739 * 142.88299 * 20 19 17 33 33 H 1.08996 * 110.78537 * 332.92727 * 22 17 15 34 34 H 1.08997 * 110.78445 * 96.19576 * 22 17 15 35 35 H 1.08005 * 120.60375 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4828 2.0500 -1.4000 5 1 1.4420 2.6509 0.7062 6 1 3.5420 1.4384 0.6940 7 6 2.0075 -1.2127 -0.0005 8 1 1.5051 -2.1265 0.2805 9 6 3.3738 -1.2410 -0.3694 10 6 4.2461 -2.2235 0.1472 11 6 5.5667 -2.2125 -0.2385 12 7 6.0249 -1.3020 -1.0783 13 6 5.2483 -0.3593 -1.5911 14 7 5.7892 0.5714 -2.4778 15 6 7.0666 0.4470 -2.8891 16 8 7.7166 -0.5239 -2.5639 17 6 7.6872 1.5142 -3.7533 18 8 7.1186 2.7782 -3.4052 19 6 9.1853 1.5594 -3.4808 20 6 10.0261 1.2914 -4.7460 21 16 8.8806 1.7812 -6.0995 22 6 7.3627 1.2111 -5.2307 23 6 3.9039 -0.2894 -1.2616 24 1 -0.4850 0.8401 0.0004 25 1 3.8821 -2.9727 0.8346 26 1 6.2402 -2.9607 0.1528 27 1 5.2460 1.3083 -2.7985 28 1 6.1591 2.8220 -3.5172 29 1 9.4427 2.5432 -3.0883 30 1 9.4298 0.8080 -2.7299 31 1 10.2853 0.2354 -4.8218 32 1 10.9236 1.9100 -4.7558 33 1 7.2088 0.1426 -5.3815 34 1 6.4903 1.7762 -5.5589 35 1 3.2740 0.4805 -1.6823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611223864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:40 Heat of formation + Delta-G solvation = -60.510507 kcal Electronic energy + Delta-G solvation = -21333.581639 eV Core-core repulsion = 18036.151038 eV Total energy + Delta-G solvation = -3297.430601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.96005 -40.27517 -38.30745 -36.38957 -35.70935 -34.49762 -33.24293 -31.11863 -30.21830 -27.97242 -26.82813 -24.40673 -24.24618 -22.24160 -21.00075 -20.04367 -19.64480 -18.06746 -17.75931 -17.32602 -17.25923 -16.66145 -16.20301 -16.13281 -15.78566 -15.61820 -15.07895 -14.86371 -14.77539 -14.34751 -13.91276 -13.66707 -13.52160 -13.35217 -13.03571 -12.78428 -12.69568 -12.63007 -12.37553 -12.09119 -11.84612 -11.65629 -11.38871 -11.24502 -10.69481 -10.18628 -9.73119 -9.09228 -8.99952 -8.81488 -6.75463 0.42972 0.67591 0.72371 1.07702 1.21174 1.36097 1.47317 1.57892 1.74921 2.06996 2.62906 2.87810 3.15903 3.21822 3.49296 3.55517 3.92188 4.00614 4.02767 4.20251 4.38683 4.44662 4.56807 4.59882 4.68559 4.70981 4.82717 4.89145 5.08565 5.24689 5.43310 5.64560 5.93134 6.12379 6.25289 6.45167 6.49369 6.65259 6.96472 7.59523 8.06197 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.024393 B = 0.004474 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.607218 B = 6257.092357 C = 6954.266373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.053 3.947 3 Si 0.968 3.032 4 H -0.236 1.236 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.469 4.469 8 H 0.066 0.934 9 C 0.113 3.887 10 C -0.283 4.283 11 C 0.129 3.871 12 N -0.574 5.574 13 C 0.365 3.635 14 N -0.649 5.649 15 C 0.482 3.518 16 O -0.500 6.500 17 C 0.141 3.859 18 O -0.539 6.539 19 C -0.117 4.117 20 C -0.052 4.052 21 S -0.294 6.294 22 C -0.089 4.089 23 C -0.329 4.329 24 H 0.300 0.700 25 H 0.120 0.880 26 H 0.161 0.839 27 H 0.423 0.577 28 H 0.394 0.606 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.096 0.904 34 H 0.142 0.858 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.467 8.123 -8.838 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.165 4.165 3 Si 0.791 3.209 4 H -0.161 1.161 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.499 4.499 8 H 0.084 0.916 9 C 0.105 3.895 10 C -0.306 4.306 11 C -0.022 4.022 12 N -0.294 5.294 13 C 0.137 3.863 14 N -0.298 5.298 15 C 0.266 3.734 16 O -0.371 6.371 17 C 0.095 3.905 18 O -0.348 6.348 19 C -0.156 4.156 20 C -0.200 4.200 21 S -0.067 6.067 22 C -0.238 4.238 23 C -0.355 4.355 24 H 0.111 0.889 25 H 0.138 0.862 26 H 0.178 0.822 27 H 0.261 0.739 28 H 0.245 0.755 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.152 0.848 33 H 0.115 0.885 34 H 0.160 0.840 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.412 8.188 -9.855 19.284 hybrid contribution -2.374 -0.225 1.387 2.759 sum 12.038 7.963 -8.468 16.734 Atomic orbital electron populations 1.69655 1.09247 1.32190 1.34272 1.26886 0.95357 1.04374 0.89880 0.85499 0.78689 0.76092 0.80645 1.16066 1.20221 1.19130 1.19518 0.93450 0.96111 1.40856 0.91579 1.17873 0.92833 0.90602 0.88230 1.22121 0.94842 1.05573 1.08109 1.22356 0.93520 0.94649 0.91717 1.67378 1.37955 1.07258 1.16850 1.18195 0.88534 0.89542 0.90074 1.43449 1.13656 1.28225 1.44432 1.22024 0.81589 0.88655 0.81138 1.90783 1.60910 1.31652 1.53731 1.21951 0.95453 0.81742 0.91388 1.86735 1.27882 1.30842 1.89321 1.21905 0.88346 1.05872 0.99475 1.24232 0.99542 1.05857 0.90382 1.88025 1.05148 1.82340 1.31174 1.24889 1.00272 1.05737 0.92901 1.21405 0.94455 1.09014 1.10589 0.88924 0.86165 0.82233 0.73861 0.75511 0.87598 0.89142 0.88305 0.84765 0.88550 0.83958 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.70 13.92 21.84 0.30 -41.40 16 2 C 0.05 2.62 5.44 85.29 0.46 3.08 16 3 Si 0.97 38.46 24.53 68.60 1.68 40.14 16 4 H -0.24 -8.05 6.45 99.48 0.64 -7.41 16 5 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.27 -11.40 7.00 99.48 0.70 -10.70 16 7 C -0.47 -24.65 9.64 23.52 0.23 -24.42 16 8 H 0.07 3.73 8.06 -2.91 -0.02 3.71 16 9 C 0.11 5.52 5.17 -21.11 -0.11 5.41 16 10 C -0.28 -12.81 9.90 22.84 0.23 -12.59 16 11 C 0.13 5.52 11.15 84.50 0.94 6.46 16 12 N -0.57 -25.95 7.89 -193.54 -1.53 -27.47 16 13 C 0.36 15.35 7.40 132.75 0.98 16.34 16 14 N -0.65 -20.63 5.25 -308.66 -1.62 -22.25 16 15 C 0.48 14.91 6.38 87.66 0.56 15.47 16 16 O -0.50 -19.57 13.83 -3.02 -0.04 -19.61 16 17 C 0.14 3.12 1.17 -11.33 -0.01 3.10 16 18 O -0.54 -10.34 12.56 -148.98 -1.87 -12.21 16 19 C -0.12 -2.46 5.68 30.80 0.17 -2.29 16 20 C -0.05 -0.91 7.46 72.41 0.54 -0.36 16 21 S -0.29 -5.95 23.27 -56.49 -1.31 -7.27 16 22 C -0.09 -1.71 6.59 72.41 0.48 -1.23 16 23 C -0.33 -14.61 7.20 22.98 0.17 -14.44 16 24 H 0.30 13.36 8.29 -92.71 -0.77 12.59 16 25 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 26 H 0.16 5.70 8.06 -2.91 -0.02 5.68 16 27 H 0.42 9.76 7.13 -92.71 -0.66 9.10 16 28 H 0.39 4.59 7.38 -74.06 -0.55 4.04 16 29 H 0.11 2.05 7.83 -2.38 -0.02 2.03 16 30 H 0.09 2.26 6.56 -2.39 -0.02 2.24 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.10 2.03 7.85 -2.39 -0.02 2.01 16 34 H 0.14 1.98 7.96 -2.39 -0.02 1.96 16 35 H 0.12 5.03 4.43 -2.91 -0.01 5.02 16 Total: -1.00 -66.60 302.87 0.12 -66.48 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.13 Total: 29.05 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 4.64 Total: -5.46 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -2.84 Total: -91.12 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.91 Total: -31.83 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.68 Total: 40.14 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -1.31 Total: -7.27 kcal Total: -66.60 0.12 -66.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611223864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.969 kcal (2) G-P(sol) polarization free energy of solvation -66.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds