Wall clock time and date at job start Tue Mar 31 2020 04:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00035 * 2 1 4 4 H 1.09001 * 109.51142 * 309.89248 * 3 2 1 5 5 C 1.53302 * 109.51522 * 189.74579 * 3 2 1 6 6 N 1.47144 * 108.38811 * 187.77358 * 5 3 2 7 7 S 1.65599 * 120.98075 * 230.55552 * 6 5 3 8 8 O 1.42097 * 106.40519 * 23.51942 * 7 6 5 9 9 O 1.42107 * 106.40277 * 156.43592 * 7 6 5 10 10 N 1.65598 * 107.21915 * 269.97675 * 7 6 5 11 11 C 1.46497 * 120.00023 * 90.00272 * 10 7 6 12 12 C 1.46498 * 119.99954 * 270.00151 * 10 7 6 13 13 C 1.50704 * 109.47372 * 95.00015 * 12 10 7 14 14 H 1.07998 * 119.99641 * 359.97438 * 13 12 10 15 15 C 1.37870 * 120.00366 * 180.02562 * 13 12 10 16 16 N 1.31525 * 119.99983 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00338 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47087 * 89.99819 * 17 15 13 19 19 H 1.48501 * 109.47317 * 209.99561 * 17 15 13 20 20 H 1.48499 * 109.46722 * 329.99727 * 17 15 13 21 21 C 1.47150 * 118.03757 * 50.52922 * 6 5 3 22 22 C 1.53296 * 108.38576 * 309.46977 * 21 6 5 23 23 O 1.42959 * 109.51487 * 69.99921 * 3 2 1 24 24 H 1.08999 * 109.46678 * 60.00487 * 1 2 3 25 25 H 1.09001 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47239 * 300.00108 * 1 2 3 27 27 H 1.09001 * 109.67923 * 307.50186 * 5 3 2 28 28 H 1.09004 * 109.67937 * 68.04700 * 5 3 2 29 29 H 1.08994 * 109.47571 * 89.99859 * 11 10 7 30 30 H 1.09007 * 109.46746 * 210.00089 * 11 10 7 31 31 H 1.09001 * 109.46888 * 329.99538 * 11 10 7 32 32 H 1.09004 * 109.47339 * 215.00210 * 12 10 7 33 33 H 1.09008 * 109.47342 * 334.99814 * 12 10 7 34 34 H 0.96993 * 119.99992 * 180.02562 * 16 15 13 35 35 H 1.08993 * 109.68655 * 189.74152 * 21 6 5 36 36 H 1.09005 * 109.67857 * 69.19287 * 21 6 5 37 37 H 1.09003 * 109.50953 * 172.22359 * 22 21 6 38 38 H 1.08999 * 109.51122 * 292.37068 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.5563 1.9060 -0.7883 5 6 3.5195 1.1940 -0.2446 6 7 4.1200 2.5238 -0.0543 7 16 5.1255 3.1764 -1.1967 8 8 4.8021 2.5413 -2.4260 9 8 5.0797 4.5850 -1.0141 10 7 6.6676 2.7059 -0.8188 11 6 7.2088 1.4604 -1.3684 12 6 7.4906 3.5351 0.0651 13 6 7.3745 3.0296 1.4801 14 1 6.7498 2.1764 1.6991 15 6 8.0650 3.6571 2.4951 16 7 8.8254 4.6966 2.2285 17 14 7.9205 3.0311 4.2491 18 1 8.9721 2.0128 4.4995 19 1 8.0927 4.1632 5.1946 20 1 6.5820 2.4195 4.4477 21 6 3.8001 3.2568 1.1809 22 6 2.2772 3.2678 1.3560 23 8 1.7834 1.9291 1.2662 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9552 0.4896 0.4640 28 1 3.7020 0.8511 -1.2631 29 1 7.6998 1.6659 -2.3195 30 1 7.9319 1.0390 -0.6698 31 1 6.3975 0.7494 -1.5244 32 1 8.5316 3.4846 -0.2545 33 1 7.1461 4.5683 0.0189 34 1 9.3115 5.1379 2.9425 35 1 4.1684 4.2799 1.1065 36 1 4.2641 2.7602 2.0331 37 1 2.0259 3.6838 2.3317 38 1 1.8250 3.8760 0.5726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615297246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:09 Heat of formation + Delta-G solvation = -154.336652 kcal Electronic energy + Delta-G solvation = -23676.385483 eV Core-core repulsion = 20067.577355 eV Total energy + Delta-G solvation = -3608.808127 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.58606 -37.06716 -36.79539 -35.53388 -35.33433 -34.63000 -32.52394 -30.77551 -27.83152 -27.50436 -25.91606 -25.09998 -23.78356 -22.32444 -21.37202 -18.63261 -17.69432 -17.06875 -16.88808 -16.70908 -16.39328 -16.09727 -15.47149 -14.90511 -14.48526 -14.38048 -14.05215 -13.84961 -13.61067 -13.33233 -13.23905 -12.43510 -12.29629 -12.19141 -11.89073 -11.84135 -11.79484 -11.33436 -11.24008 -11.19099 -11.16578 -10.92535 -10.79118 -10.56633 -10.17545 -10.12301 -9.98906 -9.81798 -8.71264 -8.53152 -8.08760 -6.14971 -4.22150 1.10005 3.12821 3.22851 3.30375 3.31061 3.35166 3.92874 4.07746 4.33322 4.75064 4.77231 4.87599 4.99683 5.18602 5.19111 5.25322 5.30223 5.36595 5.50317 5.54372 5.58239 5.63815 5.81037 6.04435 6.16624 6.23573 6.29027 6.47251 6.66814 6.84916 7.14477 7.28303 7.37931 7.57184 7.81732 8.10503 8.83292 9.44477 10.92919 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.006510 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.964381 B = 4300.060542 C = 5193.550136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.247 3.753 4 H 0.058 0.942 5 C 0.105 3.895 6 N -1.005 6.005 7 S 2.787 3.213 8 O -0.995 6.995 9 O -0.973 6.973 10 N -0.994 5.994 11 C 0.106 3.894 12 C 0.243 3.757 13 C -0.541 4.541 14 H 0.063 0.937 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.087 3.913 22 C 0.063 3.937 23 O -0.404 6.404 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.599 -6.202 -3.548 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.150 3.850 4 H 0.075 0.925 5 C -0.022 4.022 6 N -0.844 5.844 7 S 2.797 3.203 8 O -0.980 6.980 9 O -0.957 6.957 10 N -0.836 5.836 11 C -0.041 4.041 12 C 0.121 3.879 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.721 3.279 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.038 4.038 22 C -0.015 4.015 23 O -0.325 6.325 24 H 0.060 0.940 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.691 -5.778 -4.068 14.526 hybrid contribution 0.131 -0.278 1.304 1.340 sum -12.560 -6.056 -2.764 14.215 Atomic orbital electron populations 1.22773 0.80264 1.02841 1.00589 1.87972 1.20728 1.25746 1.94038 1.23213 0.93237 0.82818 0.85769 0.92486 1.21616 0.91404 0.85151 1.04016 1.58356 1.63317 1.27196 1.35532 1.01767 0.72630 0.73320 0.72615 1.93531 1.84330 1.78058 1.42042 1.93572 1.86542 1.29233 1.86322 1.57638 1.30514 1.33034 1.62442 1.21238 0.99340 0.85360 0.98143 1.19250 0.91101 0.90099 0.87432 1.21547 1.29107 1.15129 0.92204 0.91881 1.24953 0.94980 0.94726 0.99162 1.69937 1.29160 1.20472 1.33172 0.86575 0.78655 0.78444 0.84214 1.20636 1.21104 1.19680 1.22133 0.95376 0.98886 0.87420 1.22968 0.93629 0.81975 1.02927 1.87766 1.80429 1.28858 1.35469 0.93983 0.89381 0.93019 0.89703 0.87712 0.93624 0.90688 0.92911 0.94336 0.93110 0.92547 0.87160 0.89609 0.87301 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.88 101.05 1.10 1.42 16 2 O -0.37 -5.00 10.62 -59.03 -0.63 -5.62 16 3 C 0.25 3.51 3.30 37.31 0.12 3.63 16 4 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 5 C 0.10 1.58 6.36 -3.53 -0.02 1.56 16 6 N -1.00 -17.07 3.40 -113.06 -0.38 -17.46 16 7 S 2.79 54.65 6.12 -107.50 -0.66 53.99 16 8 O -1.00 -19.85 15.83 -57.17 -0.91 -20.75 16 9 O -0.97 -21.71 15.31 -57.17 -0.88 -22.58 16 10 N -0.99 -20.34 3.23 -123.05 -0.40 -20.74 16 11 C 0.11 1.81 10.31 59.85 0.62 2.42 16 12 C 0.24 5.93 5.41 -5.19 -0.03 5.90 16 13 C -0.54 -13.79 9.38 -34.44 -0.32 -14.11 16 14 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 17 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.09 1.41 6.71 -3.53 -0.02 1.39 16 22 C 0.06 0.83 6.98 37.31 0.26 1.09 16 23 O -0.40 -5.95 10.22 -59.03 -0.60 -6.55 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.52 7.89 -51.93 -0.41 0.11 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.10 1.50 6.95 -51.93 -0.36 1.14 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 31 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 32 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.05 1.35 6.92 -51.92 -0.36 0.99 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.11 1.89 6.94 -51.93 -0.36 1.53 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -31.44 327.55 -7.85 -39.29 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.66 Total: -0.57 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 1.61 Total: 4.92 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -0.04 Total: -62.37 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -3.01 Total: -55.52 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 54.65 SS G_CDS: -0.66 Total: 53.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.44 -7.85 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615297246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.046 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds