Wall clock time and date at job start Tue Mar 31 2020 04:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 114.00035 * 2 1 4 4 H 1.09001 * 109.51142 * 309.89248 * 3 2 1 5 5 C 1.53302 * 109.51522 * 189.74579 * 3 2 1 6 6 N 1.47144 * 108.38811 * 187.77358 * 5 3 2 7 7 S 1.65599 * 120.98075 * 230.55552 * 6 5 3 8 8 O 1.42097 * 106.40519 * 23.51942 * 7 6 5 9 9 O 1.42107 * 106.40277 * 156.43592 * 7 6 5 10 10 N 1.65598 * 107.21915 * 269.97675 * 7 6 5 11 11 C 1.46497 * 120.00023 * 90.00272 * 10 7 6 12 12 C 1.46498 * 119.99954 * 270.00151 * 10 7 6 13 13 C 1.50704 * 109.47372 * 95.00015 * 12 10 7 14 14 H 1.07998 * 119.99641 * 359.97438 * 13 12 10 15 15 C 1.37870 * 120.00366 * 180.02562 * 13 12 10 16 16 N 1.31525 * 119.99983 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00338 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47087 * 89.99819 * 17 15 13 19 19 H 1.48501 * 109.47317 * 209.99561 * 17 15 13 20 20 H 1.48499 * 109.46722 * 329.99727 * 17 15 13 21 21 C 1.47150 * 118.03757 * 50.52922 * 6 5 3 22 22 C 1.53296 * 108.38576 * 309.46977 * 21 6 5 23 23 O 1.42959 * 109.51487 * 69.99921 * 3 2 1 24 24 H 1.08999 * 109.46678 * 60.00487 * 1 2 3 25 25 H 1.09001 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47239 * 300.00108 * 1 2 3 27 27 H 1.09001 * 109.67923 * 307.50186 * 5 3 2 28 28 H 1.09004 * 109.67937 * 68.04700 * 5 3 2 29 29 H 1.08994 * 109.47571 * 89.99859 * 11 10 7 30 30 H 1.09007 * 109.46746 * 210.00089 * 11 10 7 31 31 H 1.09001 * 109.46888 * 329.99538 * 11 10 7 32 32 H 1.09004 * 109.47339 * 215.00210 * 12 10 7 33 33 H 1.09008 * 109.47342 * 334.99814 * 12 10 7 34 34 H 0.96993 * 119.99992 * 180.02562 * 16 15 13 35 35 H 1.08993 * 109.68655 * 189.74152 * 21 6 5 36 36 H 1.09005 * 109.67857 * 69.19287 * 21 6 5 37 37 H 1.09003 * 109.50953 * 172.22359 * 22 21 6 38 38 H 1.08999 * 109.51122 * 292.37068 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.5563 1.9060 -0.7883 5 6 3.5195 1.1940 -0.2446 6 7 4.1200 2.5238 -0.0543 7 16 5.1255 3.1764 -1.1967 8 8 4.8021 2.5413 -2.4260 9 8 5.0797 4.5850 -1.0141 10 7 6.6676 2.7059 -0.8188 11 6 7.2088 1.4604 -1.3684 12 6 7.4906 3.5351 0.0651 13 6 7.3745 3.0296 1.4801 14 1 6.7498 2.1764 1.6991 15 6 8.0650 3.6571 2.4951 16 7 8.8254 4.6966 2.2285 17 14 7.9205 3.0311 4.2491 18 1 8.9721 2.0128 4.4995 19 1 8.0927 4.1632 5.1946 20 1 6.5820 2.4195 4.4477 21 6 3.8001 3.2568 1.1809 22 6 2.2772 3.2678 1.3560 23 8 1.7834 1.9291 1.2662 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.9552 0.4896 0.4640 28 1 3.7020 0.8511 -1.2631 29 1 7.6998 1.6659 -2.3195 30 1 7.9319 1.0390 -0.6698 31 1 6.3975 0.7494 -1.5244 32 1 8.5316 3.4846 -0.2545 33 1 7.1461 4.5683 0.0189 34 1 9.3115 5.1379 2.9425 35 1 4.1684 4.2799 1.1065 36 1 4.2641 2.7602 2.0331 37 1 2.0259 3.6838 2.3317 38 1 1.8250 3.8760 0.5726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615297246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:08 Heat of formation + Delta-G solvation = -178.169247 kcal Electronic energy + Delta-G solvation = -23677.418941 eV Core-core repulsion = 20067.577355 eV Total energy + Delta-G solvation = -3609.841586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69085 -38.47719 -38.04626 -37.23864 -36.98575 -35.87416 -34.48545 -31.90605 -29.66683 -28.55036 -26.95937 -26.73192 -24.92166 -24.18720 -22.57640 -20.06077 -19.15107 -18.60377 -18.38050 -18.12504 -17.70182 -17.43832 -16.90337 -16.43788 -15.97254 -15.54276 -15.19420 -15.07243 -14.94069 -14.84183 -14.47663 -14.06327 -13.97093 -13.63254 -13.45597 -13.37588 -13.04462 -12.94485 -12.92656 -12.63586 -12.48470 -12.42559 -12.25338 -12.04355 -11.83206 -11.72538 -11.37589 -10.96864 -10.58223 -10.01437 -9.75733 -8.16852 -6.30804 -0.45176 1.43841 1.45545 1.55150 1.77684 2.19481 2.41297 2.46272 2.96505 3.15004 3.33805 3.57952 3.72741 3.84446 4.06842 4.11985 4.20858 4.34256 4.48311 4.55681 4.58193 4.65048 4.68813 4.79322 4.84028 4.95196 4.99394 5.03534 5.24263 5.33891 5.49081 5.74093 5.85208 5.90489 6.09472 6.11404 6.81365 7.39823 8.91259 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.006510 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.964381 B = 4300.060542 C = 5193.550136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.382 6.382 3 C 0.247 3.753 4 H 0.069 0.931 5 C 0.100 3.900 6 N -1.002 6.002 7 S 2.800 3.200 8 O -0.998 6.998 9 O -1.004 7.004 10 N -1.002 6.002 11 C 0.097 3.903 12 C 0.257 3.743 13 C -0.540 4.540 14 H 0.069 0.931 15 C 0.015 3.985 16 N -0.928 5.928 17 Si 0.957 3.043 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.260 1.260 21 C 0.083 3.917 22 C 0.067 3.933 23 O -0.412 6.412 24 H 0.055 0.945 25 H 0.109 0.891 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.266 0.734 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.222 -7.681 -3.011 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.301 6.301 3 C 0.149 3.851 4 H 0.086 0.914 5 C -0.025 4.025 6 N -0.843 5.843 7 S 2.810 3.190 8 O -0.982 6.982 9 O -0.988 6.988 10 N -0.843 5.843 11 C -0.048 4.048 12 C 0.134 3.866 13 C -0.579 4.579 14 H 0.088 0.912 15 C -0.185 4.185 16 N -0.567 5.567 17 Si 0.782 3.218 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.184 1.184 21 C -0.043 4.043 22 C -0.010 4.010 23 O -0.333 6.333 24 H 0.074 0.926 25 H 0.127 0.873 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.153 0.847 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.326 -7.286 -3.554 16.461 hybrid contribution 0.585 0.134 1.073 1.229 sum -13.741 -7.152 -2.481 15.689 Atomic orbital electron populations 1.23012 0.78369 1.04496 1.01187 1.87943 1.22757 1.25290 1.94102 1.23190 0.92532 0.83403 0.85951 0.91375 1.21783 0.92400 0.83846 1.04521 1.58110 1.62720 1.28151 1.35293 1.01232 0.72458 0.72580 0.72731 1.93520 1.84283 1.77901 1.42472 1.93529 1.86930 1.31526 1.86835 1.57583 1.30840 1.33828 1.62092 1.21477 1.00378 0.84438 0.98551 1.18809 0.90489 0.89362 0.87980 1.21777 1.28547 1.14903 0.92652 0.91238 1.25760 0.94703 0.94846 1.03187 1.70061 1.30337 1.21896 1.34418 0.85570 0.79084 0.77809 0.79321 1.20257 1.21130 1.18444 1.22222 0.97741 0.97797 0.86513 1.23058 0.91157 0.81860 1.04953 1.87768 1.80254 1.29381 1.35896 0.92609 0.87292 0.93187 0.89598 0.87007 0.92319 0.90733 0.90482 0.96138 0.96019 0.92528 0.88627 0.90569 0.84699 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.88 113.37 1.23 1.67 16 2 O -0.38 -9.52 10.62 -126.22 -1.34 -10.86 16 3 C 0.25 6.45 3.30 72.08 0.24 6.69 16 4 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 5 C 0.10 2.85 6.36 86.36 0.55 3.40 16 6 N -1.00 -33.01 3.40 -511.62 -1.74 -34.75 16 7 S 2.80 108.82 6.12 -56.49 -0.35 108.48 16 8 O -1.00 -38.56 15.83 -128.00 -2.03 -40.59 16 9 O -1.00 -45.51 15.31 -128.00 -1.96 -47.47 16 10 N -1.00 -40.93 3.23 -543.21 -1.75 -42.68 16 11 C 0.10 3.20 10.31 127.77 1.32 4.52 16 12 C 0.26 12.82 5.41 85.63 0.46 13.28 16 13 C -0.54 -27.59 9.38 25.60 0.24 -27.35 16 14 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 15 C 0.01 0.78 5.46 84.65 0.46 1.24 16 16 N -0.93 -52.77 13.29 21.45 0.28 -52.48 16 17 Si 0.96 41.35 29.54 68.60 2.03 43.38 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 21 C 0.08 2.61 6.71 86.35 0.58 3.19 16 22 C 0.07 1.64 6.98 72.08 0.50 2.15 16 23 O -0.41 -11.15 10.22 -126.22 -1.29 -12.44 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 0.88 7.89 -2.39 -0.02 0.86 16 27 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 28 H 0.11 2.99 6.95 -2.38 -0.02 2.97 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 2.45 8.07 -2.38 -0.02 2.43 16 31 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 32 H 0.02 1.08 8.11 -2.38 -0.02 1.06 16 33 H 0.02 1.21 6.92 -2.38 -0.02 1.19 16 34 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.10 3.29 6.94 -2.39 -0.02 3.28 16 36 H 0.08 2.52 8.14 -2.38 -0.02 2.51 16 37 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -66.41 327.55 -1.51 -67.92 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.05 Total: 12.73 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.59 Total: 8.78 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -3.21 Total: -129.92 kcal Atomic # 8 Polarization: -104.74 SS G_CDS: -6.62 Total: -111.36 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: 108.82 SS G_CDS: -0.35 Total: 108.48 kcal Total: -66.41 -1.51 -67.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615297246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.253 kcal (2) G-P(sol) polarization free energy of solvation -66.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds