Wall clock time and date at job start Tue Mar 31 2020 03:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00473 * 2 1 4 4 H 1.48495 * 109.47196 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46811 * 300.00055 * 3 2 1 6 6 H 1.48498 * 109.47217 * 59.99645 * 3 2 1 7 7 C 1.37878 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00244 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00297 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.82637 * 300.90081 * 9 7 2 11 11 C 1.54760 * 109.83776 * 179.97438 * 9 7 2 12 12 C 1.54392 * 101.40344 * 219.80463 * 11 9 7 13 13 H 1.08992 * 109.22329 * 280.44334 * 12 11 9 14 14 C 1.53946 * 101.53615 * 36.18873 * 12 11 9 15 15 H 1.09003 * 112.46762 * 199.12506 * 14 12 11 16 16 C 1.53080 * 110.88387 * 73.41278 * 14 12 11 17 17 C 1.52584 * 111.01363 * 53.26562 * 16 14 12 18 18 C 1.53329 * 108.41986 * 297.61968 * 17 16 14 19 19 C 1.50794 * 112.65457 * 158.34872 * 12 11 9 20 20 H 1.08997 * 108.97070 * 176.11870 * 19 12 11 21 21 N 1.46900 * 109.03247 * 57.23404 * 19 12 11 22 22 C 1.46898 * 111.00190 * 152.78840 * 21 19 12 23 23 C 1.52999 * 109.47548 * 275.00196 * 22 21 19 24 24 C 1.52997 * 109.47317 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47060 * 59.99960 * 24 23 22 26 26 C 1.53002 * 109.47233 * 299.99657 * 25 24 23 27 27 C 1.52997 * 109.46817 * 60.00194 * 26 25 24 28 28 O 1.43435 * 109.91796 * 61.84918 * 9 7 2 29 29 H 0.96997 * 119.99269 * 0.02562 * 1 2 3 30 30 H 1.08995 * 111.03846 * 101.77307 * 11 9 7 31 31 H 1.09000 * 111.06922 * 337.84953 * 11 9 7 32 32 H 1.08990 * 109.16965 * 292.86645 * 16 14 12 33 33 H 1.09003 * 109.12984 * 173.62661 * 16 14 12 34 34 H 1.08998 * 109.67666 * 177.88951 * 17 16 14 35 35 H 1.09001 * 109.70565 * 57.36758 * 17 16 14 36 36 H 1.09006 * 109.73510 * 304.37310 * 18 17 16 37 37 H 1.09007 * 109.73463 * 183.68545 * 18 17 16 38 38 H 1.00896 * 111.00314 * 28.83506 * 21 19 12 39 39 H 1.09002 * 109.47032 * 34.99904 * 22 21 19 40 40 H 1.08996 * 109.46929 * 59.99097 * 23 22 21 41 41 H 1.09002 * 109.46716 * 299.99902 * 23 22 21 42 42 H 1.09002 * 109.47153 * 299.99641 * 24 23 22 43 43 H 1.09001 * 109.46832 * 179.97438 * 24 23 22 44 44 H 1.08992 * 109.47399 * 59.99823 * 25 24 23 45 45 H 1.09004 * 109.46724 * 180.02562 * 25 24 23 46 46 H 1.08993 * 109.47662 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.47075 * 300.00932 * 26 25 24 48 48 H 1.09002 * 109.47153 * 60.00231 * 27 26 25 49 49 H 1.09001 * 109.47289 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6097 -2.5559 0.8802 11 6 2.2491 -3.6820 0.0005 12 6 1.5574 -4.6651 -0.9683 13 1 0.7619 -5.1900 -0.4396 14 6 0.9443 -3.7007 -1.9998 15 1 0.1444 -4.1630 -2.5783 16 6 2.0273 -3.1116 -2.9072 17 6 2.8689 -4.2147 -3.5420 18 6 3.5807 -4.9853 -2.4238 19 6 2.5162 -5.6652 -1.5635 20 1 1.9569 -6.3687 -2.1802 21 7 3.1766 -6.4011 -0.4770 22 6 3.5879 -7.7394 -0.9216 23 6 2.4132 -8.7088 -0.7757 24 6 2.8415 -10.1025 -1.2393 25 6 4.0124 -10.5876 -0.3824 26 6 5.1872 -9.6183 -0.5283 27 6 4.7589 -8.2246 -0.0647 28 8 0.4561 -2.6046 -1.1888 29 1 -0.4849 0.8401 -0.0004 30 1 2.3428 -4.1149 0.9964 31 1 3.2218 -3.3738 -0.3830 32 1 2.6742 -2.4624 -2.3174 33 1 1.5535 -2.5250 -3.6944 34 1 3.6075 -3.7737 -4.2114 35 1 2.2245 -4.8924 -4.1020 36 1 4.1616 -4.2944 -1.8128 37 1 4.2397 -5.7378 -2.8571 38 1 2.5813 -6.4571 0.3357 39 1 3.8959 -7.6965 -1.9663 40 1 1.5791 -8.3633 -1.3865 41 1 2.1052 -8.7516 0.2690 42 1 3.1492 -10.0592 -2.2841 43 1 2.0047 -10.7931 -1.1350 44 1 3.7047 -10.6308 0.6623 45 1 4.3178 -11.5804 -0.7130 46 1 6.0216 -9.9640 0.0818 47 1 5.4949 -9.5750 -1.5731 48 1 4.4512 -8.2678 0.9801 49 1 5.5957 -7.5338 -0.1690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685939725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:36 Heat of formation + Delta-G solvation = -78.852670 kcal Electronic energy + Delta-G solvation = -25320.140023 eV Core-core repulsion = 22052.086370 eV Total energy + Delta-G solvation = -3268.053653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.97360 -38.62118 -35.76755 -33.71275 -32.32789 -31.08799 -30.87036 -28.97813 -28.50822 -26.80430 -24.56700 -22.78692 -22.23177 -21.71234 -21.02600 -20.15589 -19.86466 -18.22642 -16.49902 -15.92184 -15.69612 -15.21227 -14.76460 -14.51722 -14.37221 -14.22024 -13.81828 -13.77980 -13.20968 -13.16687 -12.91270 -12.61478 -12.31824 -12.17992 -11.84260 -11.69444 -11.35872 -11.28304 -11.16154 -11.04627 -10.83081 -10.78335 -10.74265 -10.64069 -10.43188 -10.37160 -10.27738 -10.11499 -9.89353 -9.55966 -9.35237 -9.01001 -8.45419 -8.18036 -7.76096 -5.91178 -4.03656 3.33601 3.41682 3.45259 4.13652 4.48760 4.55054 4.63504 4.80603 4.97223 5.04705 5.07610 5.17913 5.21952 5.29706 5.36798 5.41703 5.46562 5.49317 5.56600 5.63611 5.68319 5.80125 5.83965 5.85710 5.87126 5.90497 5.93332 5.99287 6.01760 6.08159 6.10562 6.21840 6.26093 6.28323 6.42622 6.48244 6.50454 6.66992 6.72574 6.80951 6.90256 6.99292 7.27124 7.33418 7.57907 7.74918 7.96228 8.37920 8.65100 9.11285 9.67086 11.15518 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.027374 B = 0.003702 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.606630 B = 7561.385296 C = 7698.847648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.078 3.922 3 Si 0.885 3.115 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.203 3.797 10 H 0.035 0.965 11 C -0.122 4.122 12 C -0.123 4.123 13 H 0.063 0.937 14 C 0.087 3.913 15 H 0.074 0.926 16 C -0.136 4.136 17 C -0.117 4.117 18 C -0.104 4.104 19 C 0.109 3.891 20 H 0.035 0.965 21 N -0.679 5.679 22 C 0.089 3.911 23 C -0.150 4.150 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.106 4.106 28 O -0.361 6.361 29 H 0.258 0.742 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.340 0.660 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.068 -19.109 -3.507 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.127 4.127 3 Si 0.713 3.287 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.575 4.575 8 H 0.076 0.924 9 C 0.148 3.852 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.142 4.142 13 H 0.081 0.919 14 C 0.028 3.972 15 H 0.092 0.908 16 C -0.174 4.174 17 C -0.156 4.156 18 C -0.142 4.142 19 C 0.000 4.000 20 H 0.053 0.947 21 N -0.309 5.309 22 C -0.022 4.022 23 C -0.189 4.189 24 C -0.153 4.153 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.144 4.144 28 O -0.280 6.280 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.159 0.841 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.344 -18.550 -3.642 20.281 hybrid contribution -0.366 0.330 -0.018 0.493 sum 6.978 -18.220 -3.660 19.851 Atomic orbital electron populations 1.70054 1.05962 1.26130 1.48058 1.25047 0.94671 0.99033 0.93986 0.86674 0.80323 0.84209 0.77543 1.19700 1.20998 1.21043 1.21421 0.92614 0.90791 1.52713 0.92380 1.20362 0.87988 0.92020 0.84857 0.94701 1.22996 1.00370 0.95470 0.97185 1.22154 0.97273 0.96576 0.98222 0.91890 1.22665 0.94182 0.88181 0.92181 0.90841 1.22015 0.98269 0.97674 0.99406 1.21522 0.98741 0.97984 0.97315 1.21579 0.97201 0.98985 0.96392 1.20838 0.93451 0.93997 0.91693 0.94703 1.60649 1.47003 1.15436 1.07780 1.21610 0.94053 0.87263 0.99225 1.22297 0.99051 0.95996 1.01552 1.21464 0.97897 0.96324 0.99610 1.21544 0.95624 0.98394 1.00152 1.21537 0.97520 0.95298 1.01351 1.21490 0.98059 0.95422 0.99449 1.89042 1.56395 1.48355 1.34231 0.93215 0.92623 0.91007 0.89720 0.92641 0.92379 0.92943 0.90692 0.92986 0.84074 0.90753 0.92207 0.91888 0.92126 0.92338 0.92088 0.92355 0.92078 0.92167 0.92116 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.10 12.94 55.43 0.72 -25.38 16 2 C 0.08 2.22 5.41 -17.82 -0.10 2.13 16 3 Si 0.88 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.54 -15.00 8.10 -34.44 -0.28 -15.28 16 8 H 0.06 1.59 7.52 -52.49 -0.39 1.20 16 9 C 0.20 5.21 3.05 -26.95 -0.08 5.13 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 11 C -0.12 -2.49 4.97 -25.08 -0.12 -2.61 16 12 C -0.12 -2.15 2.28 -90.50 -0.21 -2.36 16 13 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 14 C 0.09 1.75 4.14 -26.20 -0.11 1.64 16 15 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 16 C -0.14 -2.57 5.08 -26.90 -0.14 -2.71 16 17 C -0.12 -1.75 5.93 -26.77 -0.16 -1.91 16 18 C -0.10 -1.50 5.24 -26.66 -0.14 -1.64 16 19 C 0.11 1.57 2.01 -68.91 -0.14 1.43 16 20 H 0.03 0.49 7.07 -51.93 -0.37 0.12 16 21 N -0.68 -8.77 5.66 -101.00 -0.57 -9.34 16 22 C 0.09 0.96 2.26 -67.71 -0.15 0.80 16 23 C -0.15 -1.47 5.15 -26.73 -0.14 -1.61 16 24 C -0.11 -0.97 5.92 -26.73 -0.16 -1.13 16 25 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 26 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 27 C -0.11 -1.05 5.53 -26.73 -0.15 -1.20 16 28 O -0.36 -9.39 10.14 -35.23 -0.36 -9.75 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.51 5.53 -51.93 -0.29 1.22 16 32 H 0.08 1.85 6.36 -51.93 -0.33 1.52 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.23 6.69 -51.93 -0.35 0.88 16 37 H 0.05 0.68 7.42 -51.92 -0.39 0.30 16 38 H 0.34 4.43 7.98 -39.29 -0.31 4.12 16 39 H 0.07 0.85 7.10 -51.93 -0.37 0.48 16 40 H 0.06 0.63 7.42 -51.93 -0.39 0.25 16 41 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -29.60 358.18 -11.30 -40.90 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -9.08 Total: 3.11 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -2.38 Total: -21.58 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.15 Total: -34.72 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.36 Total: -9.75 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.60 -11.30 -40.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685939725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.950 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds