Wall clock time and date at job start Tue Mar 31 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00473 * 2 1 4 4 H 1.48495 * 109.47196 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46811 * 300.00055 * 3 2 1 6 6 H 1.48498 * 109.47217 * 59.99645 * 3 2 1 7 7 C 1.37878 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00244 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00297 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.82637 * 300.90081 * 9 7 2 11 11 C 1.54760 * 109.83776 * 179.97438 * 9 7 2 12 12 C 1.54392 * 101.40344 * 219.80463 * 11 9 7 13 13 H 1.08992 * 109.22329 * 280.44334 * 12 11 9 14 14 C 1.53946 * 101.53615 * 36.18873 * 12 11 9 15 15 H 1.09003 * 112.46762 * 199.12506 * 14 12 11 16 16 C 1.53080 * 110.88387 * 73.41278 * 14 12 11 17 17 C 1.52584 * 111.01363 * 53.26562 * 16 14 12 18 18 C 1.53329 * 108.41986 * 297.61968 * 17 16 14 19 19 C 1.50794 * 112.65457 * 158.34872 * 12 11 9 20 20 H 1.08997 * 108.97070 * 176.11870 * 19 12 11 21 21 N 1.46900 * 109.03247 * 57.23404 * 19 12 11 22 22 C 1.46898 * 111.00190 * 152.78840 * 21 19 12 23 23 C 1.52999 * 109.47548 * 275.00196 * 22 21 19 24 24 C 1.52997 * 109.47317 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47060 * 59.99960 * 24 23 22 26 26 C 1.53002 * 109.47233 * 299.99657 * 25 24 23 27 27 C 1.52997 * 109.46817 * 60.00194 * 26 25 24 28 28 O 1.43435 * 109.91796 * 61.84918 * 9 7 2 29 29 H 0.96997 * 119.99269 * 0.02562 * 1 2 3 30 30 H 1.08995 * 111.03846 * 101.77307 * 11 9 7 31 31 H 1.09000 * 111.06922 * 337.84953 * 11 9 7 32 32 H 1.08990 * 109.16965 * 292.86645 * 16 14 12 33 33 H 1.09003 * 109.12984 * 173.62661 * 16 14 12 34 34 H 1.08998 * 109.67666 * 177.88951 * 17 16 14 35 35 H 1.09001 * 109.70565 * 57.36758 * 17 16 14 36 36 H 1.09006 * 109.73510 * 304.37310 * 18 17 16 37 37 H 1.09007 * 109.73463 * 183.68545 * 18 17 16 38 38 H 1.00896 * 111.00314 * 28.83506 * 21 19 12 39 39 H 1.09002 * 109.47032 * 34.99904 * 22 21 19 40 40 H 1.08996 * 109.46929 * 59.99097 * 23 22 21 41 41 H 1.09002 * 109.46716 * 299.99902 * 23 22 21 42 42 H 1.09002 * 109.47153 * 299.99641 * 24 23 22 43 43 H 1.09001 * 109.46832 * 179.97438 * 24 23 22 44 44 H 1.08992 * 109.47399 * 59.99823 * 25 24 23 45 45 H 1.09004 * 109.46724 * 180.02562 * 25 24 23 46 46 H 1.08993 * 109.47662 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.47075 * 300.00932 * 26 25 24 48 48 H 1.09002 * 109.47153 * 60.00231 * 27 26 25 49 49 H 1.09001 * 109.47289 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6097 -2.5559 0.8802 11 6 2.2491 -3.6820 0.0005 12 6 1.5574 -4.6651 -0.9683 13 1 0.7619 -5.1900 -0.4396 14 6 0.9443 -3.7007 -1.9998 15 1 0.1444 -4.1630 -2.5783 16 6 2.0273 -3.1116 -2.9072 17 6 2.8689 -4.2147 -3.5420 18 6 3.5807 -4.9853 -2.4238 19 6 2.5162 -5.6652 -1.5635 20 1 1.9569 -6.3687 -2.1802 21 7 3.1766 -6.4011 -0.4770 22 6 3.5879 -7.7394 -0.9216 23 6 2.4132 -8.7088 -0.7757 24 6 2.8415 -10.1025 -1.2393 25 6 4.0124 -10.5876 -0.3824 26 6 5.1872 -9.6183 -0.5283 27 6 4.7589 -8.2246 -0.0647 28 8 0.4561 -2.6046 -1.1888 29 1 -0.4849 0.8401 -0.0004 30 1 2.3428 -4.1149 0.9964 31 1 3.2218 -3.3738 -0.3830 32 1 2.6742 -2.4624 -2.3174 33 1 1.5535 -2.5250 -3.6944 34 1 3.6075 -3.7737 -4.2114 35 1 2.2245 -4.8924 -4.1020 36 1 4.1616 -4.2944 -1.8128 37 1 4.2397 -5.7378 -2.8571 38 1 2.5813 -6.4571 0.3357 39 1 3.8959 -7.6965 -1.9663 40 1 1.5791 -8.3633 -1.3865 41 1 2.1052 -8.7516 0.2690 42 1 3.1492 -10.0592 -2.2841 43 1 2.0047 -10.7931 -1.1350 44 1 3.7047 -10.6308 0.6623 45 1 4.3178 -11.5804 -0.7130 46 1 6.0216 -9.9640 0.0818 47 1 5.4949 -9.5750 -1.5731 48 1 4.4512 -8.2678 0.9801 49 1 5.5957 -7.5338 -0.1690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685939725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:35 Heat of formation + Delta-G solvation = -95.854863 kcal Electronic energy + Delta-G solvation = -25320.877294 eV Core-core repulsion = 22052.086370 eV Total energy + Delta-G solvation = -3268.790923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.39303 -39.60427 -37.16252 -34.99696 -34.35945 -32.52106 -31.58696 -30.34736 -30.17006 -28.03461 -26.43864 -23.64272 -23.21952 -23.01752 -22.48989 -21.64397 -20.70933 -19.65392 -18.51756 -17.23696 -17.03813 -16.51724 -16.32593 -15.91730 -15.40318 -15.23297 -15.06425 -14.97104 -14.59251 -14.54677 -14.01651 -13.83815 -13.58196 -13.43720 -13.18055 -13.02931 -12.88149 -12.79224 -12.44977 -12.31364 -12.21023 -12.13280 -12.01756 -12.00447 -11.91653 -11.47426 -11.40299 -11.17539 -11.11457 -11.05051 -10.86141 -10.77902 -10.63192 -9.74273 -9.18125 -8.09545 -6.29049 1.38375 1.39385 1.51651 2.41851 3.05605 3.15630 3.55417 3.77626 3.80904 3.89681 3.93921 4.10600 4.23016 4.27760 4.31858 4.35484 4.38851 4.45704 4.51399 4.56394 4.58736 4.64575 4.66414 4.71806 4.77967 4.78637 4.83475 4.98939 5.03725 5.05943 5.12451 5.18748 5.20958 5.28000 5.28786 5.32232 5.35303 5.40524 5.40597 5.46775 5.52793 5.58056 5.66544 5.75573 5.81638 6.23630 6.28798 6.54150 6.63573 7.06028 7.46501 8.97685 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.027374 B = 0.003702 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.606630 B = 7561.385296 C = 7698.847648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.021 3.979 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.199 3.801 10 H -0.004 1.004 11 C -0.106 4.106 12 C -0.106 4.106 13 H 0.065 0.935 14 C 0.076 3.924 15 H 0.090 0.910 16 C -0.130 4.130 17 C -0.107 4.107 18 C -0.100 4.100 19 C 0.119 3.881 20 H 0.051 0.949 21 N -0.685 5.685 22 C 0.092 3.908 23 C -0.146 4.146 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.115 4.115 27 C -0.103 4.103 28 O -0.400 6.400 29 H 0.259 0.741 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.340 0.660 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.055 0.945 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.633 -21.114 -4.571 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.144 3.856 10 H 0.014 0.986 11 C -0.144 4.144 12 C -0.125 4.125 13 H 0.084 0.916 14 C 0.018 3.982 15 H 0.108 0.892 16 C -0.168 4.168 17 C -0.145 4.145 18 C -0.138 4.138 19 C 0.010 3.990 20 H 0.069 0.931 21 N -0.315 5.315 22 C -0.018 4.018 23 C -0.185 4.185 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.153 4.153 27 C -0.141 4.141 28 O -0.320 6.320 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.158 0.842 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.928 -20.574 -4.708 22.916 hybrid contribution -0.887 0.916 0.315 1.313 sum 8.041 -19.658 -4.393 21.689 Atomic orbital electron populations 1.70196 1.07634 1.26972 1.49638 1.25900 0.95508 1.02818 0.93740 0.85597 0.79306 0.79626 0.77622 1.18677 1.20792 1.20289 1.21770 0.92720 0.92183 1.51983 0.92498 1.20215 0.88145 0.93529 0.83752 0.98612 1.22754 0.98743 0.94290 0.98628 1.22019 0.97663 0.96150 0.96638 0.91634 1.23020 0.95243 0.87520 0.92456 0.89170 1.21887 0.97784 0.98567 0.98517 1.21465 0.98691 0.96869 0.97497 1.21544 0.97208 0.99012 0.95989 1.20694 0.92888 0.93324 0.92098 0.93130 1.60651 1.46643 1.16906 1.07329 1.21638 0.94639 0.86259 0.99264 1.22240 0.98325 0.96643 1.01324 1.21457 0.98354 0.95455 0.99826 1.21538 0.95165 0.98858 0.99988 1.21514 0.97951 0.94231 1.01643 1.21453 0.97298 0.96288 0.99092 1.88942 1.57329 1.50921 1.34805 0.93252 0.91638 0.91615 0.93175 0.93619 0.90931 0.90759 0.92821 0.90597 0.84168 0.90704 0.92823 0.92199 0.91779 0.91729 0.92298 0.91125 0.91311 0.91799 0.92597 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.60 12.94 21.45 0.28 -56.33 16 2 C 0.02 1.26 5.41 84.65 0.46 1.71 16 3 Si 0.95 45.42 29.54 68.60 2.03 47.45 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 7 C -0.55 -31.64 8.10 25.60 0.21 -31.43 16 8 H 0.06 3.20 7.52 -2.91 -0.02 3.18 16 9 C 0.20 10.66 3.05 30.45 0.09 10.75 16 10 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 11 C -0.11 -4.39 4.97 31.67 0.16 -4.23 16 12 C -0.11 -3.62 2.28 -10.72 -0.02 -3.65 16 13 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 14 C 0.08 3.04 4.14 30.94 0.13 3.17 16 15 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 16 C -0.13 -4.88 5.08 30.48 0.15 -4.73 16 17 C -0.11 -2.93 5.93 30.57 0.18 -2.75 16 18 C -0.10 -2.65 5.24 30.64 0.16 -2.49 16 19 C 0.12 3.16 2.01 44.14 0.09 3.25 16 20 H 0.05 1.23 7.07 -2.39 -0.02 1.22 16 21 N -0.69 -16.41 5.66 -473.47 -2.68 -19.09 16 22 C 0.09 1.75 2.26 44.92 0.10 1.85 16 23 C -0.15 -2.53 5.15 30.59 0.16 -2.37 16 24 C -0.11 -1.59 5.92 30.59 0.18 -1.41 16 25 C -0.12 -1.54 5.92 30.60 0.18 -1.35 16 26 C -0.12 -1.61 5.92 30.59 0.18 -1.43 16 27 C -0.10 -1.83 5.53 30.60 0.17 -1.67 16 28 O -0.40 -21.58 10.14 -148.98 -1.51 -23.09 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.07 2.79 5.53 -2.39 -0.01 2.78 16 32 H 0.05 2.23 6.36 -2.39 -0.02 2.21 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.68 6.69 -2.38 -0.02 1.67 16 37 H 0.08 1.71 7.42 -2.38 -0.02 1.69 16 38 H 0.34 8.32 7.98 -89.70 -0.72 7.61 16 39 H 0.07 1.46 7.10 -2.39 -0.02 1.44 16 40 H 0.05 1.00 7.42 -2.39 -0.02 0.98 16 41 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -66.25 358.18 0.88 -65.37 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.19 Total: 22.45 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 2.58 Total: -36.77 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -2.40 Total: -75.41 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -1.51 Total: -23.09 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -66.25 0.88 -65.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685939725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.488 kcal (2) G-P(sol) polarization free energy of solvation -66.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds