Wall clock time and date at job start Tue Mar 31 2020 03:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99971 * 2 1 4 4 H 1.48501 * 109.47542 * 270.00340 * 3 2 1 5 5 H 1.48500 * 109.47014 * 30.00272 * 3 2 1 6 6 H 1.48500 * 109.47159 * 150.00302 * 3 2 1 7 7 C 1.37875 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99961 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00118 * 179.97438 * 7 2 1 10 10 H 1.08996 * 109.85902 * 300.98496 * 9 7 2 11 11 C 1.55377 * 109.87073 * 179.97438 * 9 7 2 12 12 C 1.53872 * 101.14949 * 218.85786 * 11 9 7 13 13 H 1.09010 * 112.16004 * 279.68314 * 12 11 9 14 14 C 1.55331 * 99.43603 * 37.81885 * 12 11 9 15 15 H 1.09002 * 108.56785 * 71.75878 * 14 12 11 16 16 C 1.51302 * 107.79746 * 189.43420 * 14 12 11 17 17 C 1.53775 * 107.41797 * 295.72994 * 16 14 12 18 18 C 1.52579 * 111.32775 * 57.16840 * 17 16 14 19 19 C 1.52010 * 114.91074 * 151.24035 * 12 11 9 20 20 H 1.09001 * 109.94808 * 305.81901 * 19 12 11 21 21 N 1.46901 * 109.88776 * 66.87785 * 19 12 11 22 22 C 1.46904 * 110.99763 * 256.48696 * 21 19 12 23 23 C 1.53005 * 109.47086 * 274.56476 * 22 21 19 24 24 C 1.52997 * 109.46724 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47159 * 60.00632 * 24 23 22 26 26 C 1.52997 * 109.46975 * 299.99713 * 25 24 23 27 27 C 1.52994 * 109.47335 * 59.99790 * 26 25 24 28 28 O 1.41437 * 104.09133 * 316.05040 * 14 12 11 29 29 H 0.97006 * 119.99939 * 359.97438 * 1 2 3 30 30 H 1.08995 * 111.08336 * 100.88234 * 11 9 7 31 31 H 1.09001 * 111.11881 * 336.84386 * 11 9 7 32 32 H 1.09003 * 109.86622 * 176.25415 * 16 14 12 33 33 H 1.08997 * 109.92926 * 55.24147 * 16 14 12 34 34 H 1.09004 * 109.10973 * 296.69348 * 17 16 14 35 35 H 1.08997 * 109.06054 * 177.61523 * 17 16 14 36 36 H 1.09002 * 109.08218 * 184.57470 * 18 17 16 37 37 H 1.09002 * 109.07628 * 65.61450 * 18 17 16 38 38 H 1.00894 * 111.00294 * 20.44247 * 21 19 12 39 39 H 1.08991 * 109.47297 * 34.56663 * 22 21 19 40 40 H 1.08991 * 109.47205 * 300.00243 * 23 22 21 41 41 H 1.09003 * 109.46945 * 60.00526 * 23 22 21 42 42 H 1.08991 * 109.47530 * 300.00107 * 24 23 22 43 43 H 1.09010 * 109.46788 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.47257 * 179.97438 * 25 24 23 45 45 H 1.09004 * 109.47178 * 59.99574 * 25 24 23 46 46 H 1.09004 * 109.47054 * 299.99937 * 26 25 24 47 47 H 1.09009 * 109.47392 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.47487 * 179.97438 * 27 26 25 49 49 H 1.09004 * 109.46930 * 60.00071 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8815 -0.6660 -0.8800 11 6 4.0397 -2.6552 -0.0010 12 6 5.2468 -2.5353 0.9457 13 1 6.1237 -2.1258 0.4440 14 6 4.6603 -1.5367 1.9809 15 1 3.9100 -2.0558 2.5773 16 6 5.7872 -1.0982 2.8903 17 6 6.2668 -2.3397 3.6606 18 6 6.7028 -3.4493 2.7084 19 6 5.5897 -3.8038 1.7099 20 1 4.7116 -4.1639 2.2458 21 7 6.0642 -4.8356 0.7781 22 6 5.0223 -5.8415 0.5316 23 6 5.0770 -6.9108 1.6246 24 6 3.9915 -7.9581 1.3682 25 6 4.2245 -8.6107 0.0042 26 6 4.1699 -7.5415 -1.0888 27 6 5.2553 -6.4942 -0.8324 28 8 4.0144 -0.5591 1.1887 29 1 -0.4850 0.8401 0.0004 30 1 4.3531 -2.9589 -0.9997 31 1 3.2941 -3.3423 0.3993 32 1 5.4264 -0.3445 3.5902 33 1 6.6061 -0.6910 2.2972 34 1 5.4542 -2.7065 4.2877 35 1 7.1089 -2.0620 4.2944 36 1 6.9573 -4.3367 3.2881 37 1 7.5841 -3.1204 2.1577 38 1 6.3810 -4.4238 -0.0867 39 1 4.0439 -5.3613 0.5419 40 1 6.0554 -7.3911 1.6144 41 1 4.9105 -6.4460 2.5964 42 1 3.0133 -7.4775 1.3787 43 1 4.0302 -8.7197 2.1472 44 1 3.4514 -9.3571 -0.1783 45 1 5.2028 -9.0914 -0.0063 46 1 3.1916 -7.0609 -1.0783 47 1 4.3354 -8.0065 -2.0607 48 1 5.2167 -5.7326 -1.6113 49 1 6.2336 -6.9748 -0.8429 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685939727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:45 Heat of formation + Delta-G solvation = -74.873108 kcal Electronic energy + Delta-G solvation = -25512.167822 eV Core-core repulsion = 22244.286736 eV Total energy + Delta-G solvation = -3267.881086 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -40.11486 -38.53502 -36.17770 -34.16433 -32.44059 -31.21147 -30.80184 -29.43388 -28.87776 -26.94813 -24.74500 -22.73152 -21.97043 -21.25888 -20.89937 -20.31382 -19.83556 -19.42894 -16.81555 -15.92430 -15.73316 -15.26602 -14.91241 -14.52408 -14.34698 -14.19857 -14.13765 -13.79221 -13.62438 -13.43003 -12.63382 -12.50061 -12.24046 -12.19511 -12.12937 -11.99369 -11.81053 -11.44962 -11.21166 -11.13299 -11.04697 -10.81913 -10.68185 -10.56862 -10.45177 -10.38303 -10.12497 -10.11722 -9.95995 -9.72340 -9.61707 -9.26098 -8.55787 -8.25304 -8.04924 -6.09814 -4.18186 3.38951 3.44799 3.71238 4.10773 4.53290 4.55087 4.68854 4.72121 4.92506 5.00188 5.08732 5.18231 5.23851 5.30801 5.37841 5.39142 5.45022 5.48939 5.50633 5.57533 5.60585 5.62519 5.71100 5.75141 5.82987 5.91505 5.97003 5.99047 6.08288 6.10590 6.12167 6.15230 6.20384 6.23191 6.27886 6.34966 6.36185 6.37583 6.43579 6.45640 6.58986 6.65361 6.80388 7.25091 7.28927 7.54679 7.64322 8.25835 8.47002 8.91168 9.55594 11.00966 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.005139 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.291041 B = 5446.805408 C = 6682.406212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.084 3.916 3 Si 0.870 3.130 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.224 1.224 7 C -0.535 4.535 8 H 0.073 0.927 9 C 0.173 3.827 10 H 0.039 0.961 11 C -0.124 4.124 12 C -0.156 4.156 13 H 0.080 0.920 14 C 0.084 3.916 15 H 0.045 0.955 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.103 4.103 19 C 0.102 3.898 20 H 0.073 0.927 21 N -0.682 5.682 22 C 0.086 3.914 23 C -0.104 4.104 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.119 4.119 28 O -0.375 6.375 29 H 0.264 0.736 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.341 0.659 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.446 -13.265 2.852 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.120 4.120 3 Si 0.697 3.303 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.147 1.147 7 C -0.572 4.572 8 H 0.091 0.909 9 C 0.118 3.882 10 H 0.056 0.944 11 C -0.161 4.161 12 C -0.176 4.176 13 H 0.098 0.902 14 C 0.025 3.975 15 H 0.063 0.937 16 C -0.150 4.150 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.007 4.007 20 H 0.091 0.909 21 N -0.311 5.311 22 C -0.024 4.024 23 C -0.142 4.142 24 C -0.160 4.160 25 C -0.155 4.155 26 C -0.156 4.156 27 C -0.157 4.157 28 O -0.295 6.295 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.159 0.841 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.587 -13.332 3.395 19.336 hybrid contribution -0.447 1.220 -0.673 1.463 sum 13.141 -12.112 2.721 18.077 Atomic orbital electron populations 1.69940 1.06707 1.27366 1.49124 1.25020 0.94599 0.99834 0.92517 0.86959 0.82808 0.82357 0.78216 1.21147 1.21764 1.14664 1.21279 0.88689 0.94609 1.52595 0.90868 1.20990 0.94687 0.88235 0.84326 0.94379 1.22829 0.95646 0.99727 0.97945 1.23382 0.98726 0.97606 0.97906 0.90175 1.21991 0.92965 0.89692 0.92872 0.93683 1.21403 0.97709 0.97521 0.98360 1.21500 1.00722 0.95076 0.97861 1.21503 0.98206 0.97668 0.96731 1.21470 0.96657 0.89445 0.93175 0.90881 1.60540 1.37623 1.15646 1.17339 1.21585 0.93926 0.92445 0.94415 1.21504 0.98782 0.95674 0.98231 1.21555 0.99386 0.98169 0.96852 1.21524 1.01428 0.97630 0.94946 1.21502 0.99377 0.96481 0.98271 1.21683 0.99319 0.98348 0.96346 1.88526 1.73338 1.33151 1.34525 0.92616 0.92409 0.91226 0.91647 0.91837 0.92167 0.91869 0.91980 0.92217 0.84101 0.93124 0.91685 0.92327 0.91977 0.92165 0.92313 0.92171 0.91755 0.92068 0.92076 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.73 13.96 55.43 0.77 -26.96 16 2 C 0.08 2.49 5.47 -17.82 -0.10 2.39 16 3 Si 0.87 22.30 27.03 -169.99 -4.59 17.71 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.22 -5.63 5.40 56.52 0.31 -5.33 16 7 C -0.53 -15.28 9.36 -34.44 -0.32 -15.60 16 8 H 0.07 2.24 7.79 -52.48 -0.41 1.83 16 9 C 0.17 4.15 2.77 -26.62 -0.07 4.07 16 10 H 0.04 0.93 7.53 -51.93 -0.39 0.54 16 11 C -0.12 -2.39 5.59 -25.02 -0.14 -2.53 16 12 C -0.16 -2.57 1.97 -89.43 -0.18 -2.74 16 13 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 14 C 0.08 1.60 2.81 -26.35 -0.07 1.53 16 15 H 0.05 0.92 7.83 -51.93 -0.41 0.52 16 16 C -0.11 -1.73 5.98 -27.18 -0.16 -1.89 16 17 C -0.11 -1.42 5.83 -26.54 -0.15 -1.58 16 18 C -0.10 -1.27 5.47 -26.60 -0.15 -1.41 16 19 C 0.10 1.41 1.98 -67.86 -0.13 1.28 16 20 H 0.07 1.11 7.06 -51.93 -0.37 0.75 16 21 N -0.68 -8.44 6.13 -99.90 -0.61 -9.05 16 22 C 0.09 1.04 2.20 -67.71 -0.15 0.89 16 23 C -0.10 -1.15 5.42 -26.73 -0.14 -1.30 16 24 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 25 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 26 C -0.12 -1.19 5.92 -26.74 -0.16 -1.35 16 27 C -0.12 -1.28 5.19 -26.73 -0.14 -1.42 16 28 O -0.38 -8.95 8.07 -35.12 -0.28 -9.23 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.42 6.89 -51.93 -0.36 1.06 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.34 4.17 7.85 -39.30 -0.31 3.86 16 39 H 0.05 0.73 6.54 -51.93 -0.34 0.39 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.69 7.81 -51.93 -0.41 0.29 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 48 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -30.28 358.60 -11.10 -41.39 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -9.40 Total: 3.04 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -2.39 Total: -22.30 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.16 Total: -36.01 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.28 Total: -9.23 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.59 Total: 17.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.28 -11.10 -41.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685939727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.487 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds