Wall clock time and date at job start Tue Mar 31 2020 03:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99615 * 2 1 4 4 H 1.48498 * 109.47340 * 270.00134 * 3 2 1 5 5 H 1.48499 * 109.47176 * 30.00515 * 3 2 1 6 6 H 1.48510 * 109.46786 * 150.00303 * 3 2 1 7 7 C 1.38948 * 120.00541 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00095 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99872 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00114 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00298 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99948 * 180.02562 * 10 9 7 13 13 O 1.45205 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.34709 * 117.00180 * 179.97438 * 13 12 10 15 15 O 1.21470 * 119.99459 * 359.97438 * 14 13 12 16 16 C 1.47717 * 120.00323 * 179.97438 * 14 13 12 17 17 C 1.39648 * 120.14876 * 0.02562 * 16 14 13 18 18 C 1.37929 * 119.84941 * 179.97438 * 17 16 14 19 19 C 1.38386 * 120.14825 * 0.27872 * 18 17 16 20 20 C 1.38344 * 120.30060 * 359.44559 * 19 18 17 21 21 N 1.48020 * 119.92598 * 180.25531 * 20 19 18 22 22 O 1.21800 * 120.00506 * 180.29382 * 21 20 19 23 23 O 1.21807 * 119.99634 * 0.29819 * 21 20 19 24 24 C 1.37967 * 120.15507 * 0.55141 * 20 19 18 25 25 H 0.96991 * 120.00308 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99446 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47056 * 60.00342 * 12 10 9 28 28 H 1.08997 * 109.46923 * 299.99828 * 12 10 9 29 29 H 1.07999 * 120.07600 * 359.97438 * 17 16 14 30 30 H 1.08002 * 119.92294 * 179.97438 * 18 17 16 31 31 H 1.08000 * 119.84875 * 179.69878 * 19 18 17 32 32 H 1.07997 * 120.07792 * 179.74998 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0016 11 8 3.2105 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1876 -5.9665 -0.0027 14 6 1.6729 -7.2114 -0.0027 15 8 0.4686 -7.3705 -0.0018 16 6 2.5727 -8.3828 -0.0037 17 6 3.9576 -8.2034 -0.0042 18 6 4.7922 -9.3016 -0.0046 19 6 4.2599 -10.5790 -0.0105 20 6 2.8889 -10.7639 -0.0043 21 7 2.3285 -12.1340 -0.0049 22 8 1.1217 -12.2984 -0.0049 23 8 3.0744 -13.0970 -0.0054 24 6 2.0426 -9.6743 -0.0038 25 1 -0.4850 0.8399 0.0004 26 1 0.3536 -2.3906 -0.0005 27 1 0.6171 -4.9201 -0.8920 28 1 0.6177 -4.9212 0.8880 29 1 4.3743 -7.2070 -0.0042 30 1 5.8634 -9.1642 -0.0054 31 1 4.9178 -11.4354 -0.0157 32 1 0.9725 -9.8201 -0.0031 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731235587.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:42 Heat of formation + Delta-G solvation = -93.427029 kcal Electronic energy + Delta-G solvation = -21810.282049 eV Core-core repulsion = 17932.838116 eV Total energy + Delta-G solvation = -3877.443934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.078 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.50679 -40.85315 -39.38284 -38.20183 -36.87347 -36.36177 -34.11388 -32.72559 -32.11062 -31.48095 -28.65324 -26.91635 -25.33338 -24.30050 -22.94071 -21.47954 -19.75245 -19.69754 -18.92455 -18.19442 -17.84509 -17.50337 -17.15164 -16.58777 -16.58276 -15.72919 -15.48501 -14.82029 -14.61524 -14.38710 -14.08148 -13.53150 -13.28882 -12.83592 -12.48118 -12.47585 -12.10464 -11.86100 -11.70434 -11.51844 -11.42924 -11.21088 -10.85243 -10.64620 -10.51393 -10.38170 -10.15829 -9.96349 -9.69972 -8.65831 -8.18408 -6.58892 -4.01521 -0.57732 0.01110 0.92102 0.98104 2.06615 2.30751 2.96390 3.06463 3.17871 3.23089 3.61953 3.88902 3.90140 4.07101 4.20310 4.28272 4.36825 4.62158 4.86262 5.02859 5.05442 5.11934 5.35632 5.44767 5.49742 5.54231 5.70188 5.90917 6.04558 6.29142 7.30845 7.39128 7.49192 7.83838 8.37257 8.97336 9.28552 9.77319 10.58069 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.045402 B = 0.002571 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.569844 B =10886.940662 C =11488.365272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.107 0.893 9 N -0.549 5.549 10 C 0.436 3.564 11 O -0.578 6.578 12 C 0.062 3.938 13 O -0.318 6.318 14 C 0.506 3.494 15 O -0.498 6.498 16 C -0.114 4.114 17 C -0.007 4.007 18 C -0.126 4.126 19 C -0.027 4.027 20 C -0.059 4.059 21 N 0.030 4.970 22 O -0.154 6.154 23 O -0.158 6.158 24 C 0.005 3.995 25 H 0.275 0.725 26 H 0.395 0.605 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.167 0.833 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 -17.365 -0.011 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.433 4.433 8 H 0.125 0.875 9 N -0.186 5.186 10 C 0.221 3.779 11 O -0.463 6.463 12 C -0.016 4.016 13 O -0.232 6.232 14 C 0.349 3.651 15 O -0.387 6.387 16 C -0.116 4.116 17 C -0.025 4.025 18 C -0.145 4.145 19 C -0.046 4.046 20 C -0.142 4.142 21 N 0.550 4.450 22 O -0.371 6.371 23 O -0.374 6.374 24 C -0.014 4.014 25 H 0.085 0.915 26 H 0.229 0.771 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.185 0.815 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.529 -16.531 -0.005 17.773 hybrid contribution -0.647 0.511 -0.012 0.824 sum 5.883 -16.020 -0.017 17.066 Atomic orbital electron populations 1.69606 1.06037 1.28664 1.49214 1.25334 0.95697 0.99957 0.96690 0.85787 0.79231 0.80316 0.78560 1.20193 1.20742 1.19242 1.19724 0.93488 0.81664 1.48467 0.87545 1.41701 1.09439 1.04076 1.63383 1.19228 0.88309 0.83959 0.86400 1.90556 1.13333 1.86740 1.55636 1.22868 0.90692 0.84049 1.03943 1.86547 1.40236 1.13591 1.82830 1.20750 0.86836 0.83797 0.73712 1.90879 1.15628 1.86870 1.45296 1.19013 0.93561 0.90595 1.08445 1.22223 0.91755 1.01888 0.86681 1.21314 1.01828 0.90181 1.01133 1.21371 0.92209 1.00076 0.90907 1.20890 0.94338 0.82115 1.16818 1.43515 1.01021 1.02850 0.97579 1.94587 0.97184 1.92161 1.53139 1.94541 1.57781 1.31661 1.53370 1.21057 1.02373 0.89016 0.89002 0.91495 0.77086 0.89129 0.89137 0.81535 0.82321 0.82261 0.81415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.30 13.05 55.50 0.72 -22.58 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.01 29.55 -169.99 -5.02 14.99 16 4 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.22 5.29 -10.96 -0.06 -13.28 16 10 C 0.44 9.83 7.86 -10.99 -0.09 9.75 16 11 O -0.58 -14.98 16.08 -14.12 -0.23 -15.21 16 12 C 0.06 1.07 5.95 36.01 0.21 1.29 16 13 O -0.32 -5.22 9.01 -47.19 -0.43 -5.64 16 14 C 0.51 7.21 7.90 34.60 0.27 7.48 16 15 O -0.50 -8.01 16.14 -19.24 -0.31 -8.32 16 16 C -0.11 -1.25 5.87 -104.99 -0.62 -1.86 16 17 C -0.01 -0.06 9.62 -39.17 -0.38 -0.44 16 18 C -0.13 -0.76 10.03 -39.64 -0.40 -1.16 16 19 C -0.03 -0.19 9.55 -39.49 -0.38 -0.56 16 20 C -0.06 -0.57 6.84 -80.01 -0.55 -1.12 16 21 N 0.03 0.35 4.45 33.93 0.15 0.50 16 22 O -0.15 -2.00 18.44 -29.46 -0.54 -2.54 16 23 O -0.16 -1.86 18.44 -29.46 -0.54 -2.40 16 24 C 0.00 0.05 9.10 -39.17 -0.36 -0.31 16 25 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 26 H 0.40 9.03 7.90 -40.82 -0.32 8.71 16 27 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.17 1.43 7.61 -52.49 -0.40 1.03 16 30 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 31 H 0.16 0.79 7.60 -52.49 -0.40 0.39 16 32 H 0.17 1.80 7.20 -52.49 -0.38 1.42 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -31.72 309.78 -6.37 -38.09 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -2.28 Total: 6.29 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -2.51 Total: 5.42 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.82 Total: -35.35 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -2.05 Total: -34.11 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.72 -6.37 -38.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235587.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.336 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds