Wall clock time and date at job start Tue Mar 31 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99840 * 2 1 4 4 H 1.48499 * 109.47292 * 240.00239 * 3 2 1 5 5 H 1.48504 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47083 * 120.00171 * 3 2 1 7 7 C 1.38952 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99254 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00032 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00091 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99886 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00460 * 180.02562 * 10 9 7 13 13 O 1.45199 * 109.47676 * 180.02562 * 12 10 9 14 14 C 1.34705 * 117.00434 * 180.02562 * 13 12 10 15 15 O 1.21470 * 119.99965 * 359.97438 * 14 13 12 16 16 C 1.47726 * 120.00320 * 179.97438 * 14 13 12 17 17 C 1.39631 * 120.15220 * 179.97438 * 16 14 13 18 18 C 1.37942 * 119.84621 * 180.02562 * 17 16 14 19 19 C 1.38367 * 120.15190 * 0.02562 * 18 17 16 20 20 N 1.48020 * 119.84785 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99894 * 359.97438 * 20 19 18 22 22 O 1.21799 * 119.99903 * 179.72403 * 20 19 18 23 23 C 1.38365 * 120.30270 * 0.24919 * 19 18 17 24 24 C 1.37945 * 120.15113 * 359.49762 * 23 19 18 25 25 H 0.96997 * 120.00480 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00198 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.47185 * 59.99845 * 12 10 9 28 28 H 1.09007 * 109.47141 * 300.00220 * 12 10 9 29 29 H 1.08000 * 120.07510 * 359.97438 * 17 16 14 30 30 H 1.07998 * 119.92143 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.92169 * 179.74829 * 23 19 18 32 32 H 1.07997 * 120.07773 * 180.23196 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 8 2.1874 -5.9666 -0.0004 14 6 1.6726 -7.2114 -0.0013 15 8 0.4683 -7.3706 -0.0022 16 6 2.5724 -8.3829 -0.0012 17 6 2.0422 -9.6746 -0.0017 18 6 2.8883 -10.7641 -0.0010 19 6 4.2595 -10.5791 0.0005 20 7 5.1612 -11.7529 0.0018 21 8 4.6957 -12.8785 0.0019 22 8 6.3687 -11.5933 -0.0019 23 6 4.7917 -9.3019 0.0067 24 6 3.9572 -8.2035 0.0009 25 1 -0.4851 0.8400 0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 0.6175 -4.9205 -0.8913 28 1 0.6168 -4.9209 0.8886 29 1 0.9720 -9.8203 -0.0016 30 1 2.4794 -11.7637 -0.0010 31 1 5.8629 -9.1646 0.0120 32 1 4.3739 -7.2072 0.0019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731238224.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:26 Heat of formation + Delta-G solvation = -93.244897 kcal Electronic energy + Delta-G solvation = -21707.956970 eV Core-core repulsion = 17830.520934 eV Total energy + Delta-G solvation = -3877.436036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.078 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.53853 -40.90365 -39.38733 -38.21530 -36.91252 -36.41341 -34.12082 -32.78390 -31.95910 -31.49079 -28.83729 -27.29160 -24.85143 -23.67852 -23.57736 -21.38289 -19.80583 -19.71989 -19.02185 -18.38207 -18.20055 -17.87719 -17.02225 -16.62462 -15.89597 -15.58520 -15.37245 -14.77578 -14.40580 -14.37075 -14.22637 -13.84575 -13.53822 -13.06589 -12.50816 -12.28063 -12.02232 -11.87119 -11.70516 -11.56364 -11.46351 -11.19361 -10.91711 -10.67552 -10.56248 -10.38135 -10.15236 -9.93224 -9.69409 -8.66585 -8.18942 -6.59358 -4.01956 -0.83112 0.44661 0.68726 0.97606 2.02634 2.25243 2.95736 3.08385 3.17269 3.21158 3.61234 3.85893 3.95401 3.97750 4.16384 4.31752 4.38316 4.80395 4.81488 5.04582 5.13310 5.15086 5.23868 5.36206 5.51856 5.53264 5.72825 5.89267 6.01609 6.25011 7.26984 7.38642 7.43358 7.83012 8.36700 8.96840 9.27771 9.76694 10.57500 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.037734 B = 0.002545 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.860336 B =10999.567803 C =11726.282023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.435 3.565 11 O -0.577 6.577 12 C 0.061 3.939 13 O -0.317 6.317 14 C 0.501 3.499 15 O -0.495 6.495 16 C -0.066 4.066 17 C -0.057 4.057 18 C -0.067 4.067 19 C -0.020 4.020 20 N 0.024 4.976 21 O -0.156 6.156 22 O -0.152 6.152 23 C -0.065 4.065 24 C -0.057 4.057 25 H 0.276 0.724 26 H 0.395 0.605 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 -17.788 0.010 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.186 5.186 10 C 0.220 3.780 11 O -0.462 6.462 12 C -0.016 4.016 13 O -0.231 6.231 14 C 0.344 3.656 15 O -0.384 6.384 16 C -0.067 4.067 17 C -0.075 4.075 18 C -0.086 4.086 19 C -0.102 4.102 20 N 0.545 4.455 21 O -0.372 6.372 22 O -0.369 6.369 23 C -0.084 4.084 24 C -0.075 4.075 25 H 0.086 0.914 26 H 0.229 0.771 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.181 0.819 30 H 0.180 0.820 31 H 0.181 0.819 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.290 -17.040 0.014 17.193 hybrid contribution -0.233 0.569 0.000 0.614 sum 2.058 -16.471 0.014 16.599 Atomic orbital electron populations 1.69597 1.06036 1.28772 1.49155 1.25332 0.95700 0.99957 0.96653 0.85842 0.78775 0.79943 0.79261 1.19688 1.20805 1.19683 1.19679 0.93480 0.81672 1.48569 0.87581 1.41689 1.09414 1.04067 1.63394 1.19225 0.88327 0.83957 0.86486 1.90565 1.13316 1.86711 1.55573 1.22874 0.90684 0.84109 1.03908 1.86569 1.40266 1.13662 1.82559 1.20933 0.86944 0.83949 0.73793 1.90867 1.15635 1.86933 1.45003 1.19657 0.93531 0.91982 1.01526 1.21330 1.01771 0.89187 0.95258 1.20990 0.89837 1.01748 0.96064 1.21452 0.90615 0.86124 1.12046 1.43643 1.01702 1.02413 0.97714 1.94551 1.80180 1.09389 1.53081 1.94567 0.96840 1.92635 1.52875 1.21129 1.03021 0.88993 0.95291 1.21770 0.91476 1.00580 0.93719 0.91447 0.77105 0.89123 0.89131 0.81936 0.81971 0.81872 0.81137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.21 13.05 55.50 0.72 -22.49 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.31 -8.07 9.68 -14.93 -0.14 -8.22 16 8 H 0.11 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.15 5.29 -10.97 -0.06 -13.21 16 10 C 0.44 9.77 7.86 -10.99 -0.09 9.68 16 11 O -0.58 -14.99 16.08 -14.12 -0.23 -15.21 16 12 C 0.06 1.05 5.95 36.00 0.21 1.26 16 13 O -0.32 -5.11 9.01 -47.18 -0.42 -5.54 16 14 C 0.50 6.78 7.90 34.61 0.27 7.05 16 15 O -0.50 -7.42 16.14 -19.24 -0.31 -7.73 16 16 C -0.07 -0.67 5.87 -104.98 -0.62 -1.29 16 17 C -0.06 -0.46 9.60 -39.17 -0.38 -0.84 16 18 C -0.07 -0.51 9.54 -39.64 -0.38 -0.89 16 19 C -0.02 -0.18 6.86 -79.85 -0.55 -0.73 16 20 N 0.02 0.27 4.45 34.01 0.15 0.42 16 21 O -0.16 -1.80 18.43 -29.46 -0.54 -2.35 16 22 O -0.15 -1.81 18.43 -29.46 -0.54 -2.35 16 23 C -0.07 -0.55 9.54 -39.64 -0.38 -0.93 16 24 C -0.06 -0.53 9.62 -39.17 -0.38 -0.90 16 25 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 26 H 0.40 8.95 7.90 -40.82 -0.32 8.63 16 27 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.09 1.39 8.14 -51.92 -0.42 0.96 16 29 H 0.16 1.12 7.65 -52.49 -0.40 0.71 16 30 H 0.16 0.92 7.60 -52.49 -0.40 0.52 16 31 H 0.16 1.13 7.60 -52.49 -0.40 0.74 16 32 H 0.17 1.60 7.61 -52.49 -0.40 1.20 16 LS Contribution 309.76 15.07 4.67 4.67 Total: -1.00 -31.20 309.76 -6.37 -37.57 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -2.28 Total: 6.44 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -2.51 Total: 4.78 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.82 Total: -35.27 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -2.05 Total: -33.18 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.20 -6.37 -37.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238224.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.674 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds