Wall clock time and date at job start Tue Mar 31 2020 04:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21326 * 120.00013 * 2 1 4 4 C 1.46631 * 120.00339 * 179.97438 * 2 1 3 5 5 C 1.41524 * 126.50565 * 359.97438 * 4 2 1 6 6 C 1.36332 * 106.97763 * 180.02562 * 5 4 2 7 7 C 1.46661 * 125.81276 * 179.97438 * 6 5 4 8 8 O 1.21592 * 120.00420 * 0.02776 * 7 6 5 9 9 O 1.34877 * 119.99923 * 180.02562 * 7 6 5 10 10 C 1.45199 * 117.00002 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47170 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99941 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99862 * 179.97438 * 11 10 9 14 14 C 1.37090 * 119.99787 * 179.97438 * 13 11 10 15 15 H 1.08003 * 120.00298 * 0.02562 * 14 13 11 16 16 C 1.38951 * 120.00018 * 180.02562 * 14 13 11 17 17 N 1.31417 * 120.00105 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99976 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47055 * 89.99849 * 18 16 14 20 20 H 1.48497 * 109.46812 * 210.00051 * 18 16 14 21 21 H 1.48506 * 109.46853 * 329.99859 * 18 16 14 22 22 N 1.37893 * 108.37562 * 0.02562 * 6 5 4 23 23 C 1.46499 * 125.35111 * 179.97438 * 22 6 5 24 24 C 1.34091 * 109.29914 * 0.23632 * 22 6 5 25 25 H 1.09001 * 109.46959 * 239.99991 * 1 2 3 26 26 H 1.08992 * 109.47509 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46792 * 120.00144 * 1 2 3 28 28 H 1.07996 * 126.50926 * 0.02562 * 5 4 2 29 29 H 1.09003 * 109.47263 * 300.00110 * 10 9 7 30 30 H 1.09003 * 109.47202 * 59.99995 * 10 9 7 31 31 H 0.97000 * 120.00123 * 0.02562 * 13 11 10 32 32 H 0.96996 * 119.99763 * 179.97438 * 17 16 14 33 33 H 1.09002 * 109.47391 * 89.99599 * 23 22 6 34 34 H 1.09001 * 109.46813 * 329.99655 * 23 22 6 35 35 H 1.09004 * 109.47041 * 209.99783 * 23 22 6 36 36 H 1.07993 * 125.82050 * 179.75351 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2402 -1.2698 0.0006 5 6 1.6760 -2.5678 0.0017 6 6 2.7132 -3.4526 0.0024 7 6 2.5942 -4.9144 0.0042 8 8 1.4953 -5.4349 0.0046 9 8 3.7037 -5.6813 0.0053 10 6 3.5102 -7.1204 0.0076 11 6 4.8515 -7.8075 0.0080 12 8 5.8701 -7.1492 0.0069 13 7 4.9190 -9.1536 0.0106 14 6 6.1391 -9.7787 0.0104 15 1 7.0462 -9.1925 0.0086 16 6 6.2088 -11.1664 0.0124 17 7 7.3784 -11.7656 0.0128 18 14 4.6399 -12.1804 0.0148 19 1 4.2234 -12.4511 -1.3846 20 1 4.8827 -13.4663 0.7167 21 1 3.5664 -11.4296 0.7143 22 7 3.8932 -2.7392 0.0024 23 6 5.2368 -3.3232 0.0037 24 6 3.6177 -1.4269 0.0069 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.6238 -2.8110 0.0018 29 1 2.9526 -7.4106 0.8981 30 1 2.9525 -7.4135 -0.8818 31 1 4.1043 -9.6801 0.0118 32 1 7.4270 -12.7344 0.0146 33 1 5.5706 -3.4690 -1.0237 34 1 5.2149 -4.2838 0.5184 35 1 5.9245 -2.6513 0.5173 36 1 4.3449 -0.6285 0.0118 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731239306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:07 Heat of formation + Delta-G solvation = -104.550750 kcal Electronic energy + Delta-G solvation = -22541.066582 eV Core-core repulsion = 18798.973382 eV Total energy + Delta-G solvation = -3742.093200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91083 -40.09814 -38.90640 -38.35865 -36.33470 -34.15724 -33.40651 -31.88851 -30.56823 -30.15629 -28.49850 -26.77294 -24.84717 -23.42946 -22.46925 -20.02916 -19.71338 -19.54927 -18.67117 -17.82207 -16.94824 -16.69538 -16.10448 -15.63453 -15.51332 -15.21070 -15.01912 -14.83735 -14.73881 -14.16076 -14.00796 -13.63439 -13.10876 -12.76455 -12.71741 -12.54072 -12.47322 -12.45011 -12.28732 -12.20503 -12.03804 -11.32933 -10.84150 -10.71506 -10.66688 -10.12629 -9.97243 -9.75851 -9.19563 -8.77952 -8.71336 -8.37631 -6.46822 -4.00183 1.05017 1.17031 2.33394 2.51328 2.73900 2.93073 2.98060 3.07331 3.07730 3.45636 3.97082 4.00130 4.26463 4.53902 4.71423 4.74123 4.87405 4.99317 5.03613 5.17429 5.21534 5.22531 5.25486 5.44640 5.45181 5.53388 5.57389 5.75269 5.88228 6.19633 6.28859 6.50229 6.72368 7.36277 7.45544 7.64810 7.91956 8.38737 8.75135 9.21480 9.55405 10.65177 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.039990 B = 0.002869 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.003512 B = 9758.697314 C =10432.950019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.429 3.571 3 O -0.480 6.480 4 C -0.279 4.279 5 C -0.054 4.054 6 C -0.044 4.044 7 C 0.534 3.466 8 O -0.502 6.502 9 O -0.328 6.328 10 C 0.058 3.942 11 C 0.447 3.553 12 O -0.561 6.561 13 N -0.576 5.576 14 C -0.310 4.310 15 H 0.122 0.878 16 C 0.046 3.954 17 N -0.873 5.873 18 Si 0.879 3.121 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.268 1.268 22 N -0.401 5.401 23 C 0.054 3.946 24 C 0.107 3.893 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.161 0.839 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.374 0.626 32 H 0.276 0.724 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.646 16.754 0.057 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.309 3.691 3 O -0.357 6.357 4 C -0.286 4.286 5 C -0.079 4.079 6 C -0.152 4.152 7 C 0.378 3.622 8 O -0.390 6.390 9 O -0.243 6.243 10 C -0.019 4.019 11 C 0.232 3.768 12 O -0.444 6.444 13 N -0.216 5.216 14 C -0.438 4.438 15 H 0.140 0.860 16 C -0.159 4.159 17 N -0.512 5.512 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.193 1.193 22 N -0.073 5.073 23 C -0.086 4.086 24 C -0.037 4.037 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.178 0.822 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.207 0.793 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -11.475 17.072 0.054 20.570 hybrid contribution -1.203 -1.343 -0.011 1.803 sum -12.678 15.729 0.043 20.203 Atomic orbital electron populations 1.22179 0.93801 1.04674 1.04623 1.21514 0.91204 0.86265 0.70144 1.90543 1.72322 1.34176 1.38695 1.20212 0.93029 0.94775 1.20571 1.21226 0.98407 0.89965 0.98261 1.19109 0.86126 0.88631 1.21292 1.19855 0.82854 0.86151 0.73304 1.90889 1.27519 1.73781 1.46832 1.86627 1.34326 1.19710 1.83645 1.22801 0.98652 0.76602 1.03871 1.19132 0.89033 0.82936 0.85706 1.90573 1.35693 1.64068 1.54057 1.42033 1.08784 1.04645 1.66143 1.19409 0.84970 0.90511 1.48898 0.85991 1.25053 0.97271 0.96403 0.97125 1.69612 1.23212 1.10349 1.47982 0.86676 0.82686 0.80987 0.79154 1.19351 1.19884 1.19312 1.44073 1.07484 1.05838 1.49876 1.22641 0.78585 1.01934 1.05447 1.22675 0.96878 0.85209 0.98946 0.88929 0.90036 0.88938 0.82170 0.89198 0.89189 0.79317 0.91298 0.89286 0.86429 0.89065 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.28 9.82 36.00 0.35 -0.92 16 2 C 0.43 4.30 7.24 -30.93 -0.22 4.08 16 3 O -0.48 -6.28 17.64 5.52 0.10 -6.18 16 4 C -0.28 -2.90 6.11 -105.11 -0.64 -3.54 16 5 C -0.05 -0.58 10.08 -39.02 -0.39 -0.97 16 6 C -0.04 -0.56 6.81 -82.43 -0.56 -1.12 16 7 C 0.53 7.98 7.92 34.13 0.27 8.25 16 8 O -0.50 -8.14 16.65 -19.34 -0.32 -8.46 16 9 O -0.33 -5.35 7.09 -47.67 -0.34 -5.69 16 10 C 0.06 0.97 5.96 36.01 0.21 1.18 16 11 C 0.45 9.65 7.86 -10.98 -0.09 9.56 16 12 O -0.56 -14.16 16.08 -14.11 -0.23 -14.38 16 13 N -0.58 -13.03 5.09 -10.97 -0.06 -13.08 16 14 C -0.31 -8.34 10.16 -14.94 -0.15 -8.49 16 15 H 0.12 3.75 7.39 -52.48 -0.39 3.36 16 16 C 0.05 1.20 5.50 -17.46 -0.10 1.11 16 17 N -0.87 -24.43 13.96 55.50 0.77 -23.66 16 18 Si 0.88 18.46 27.74 -169.99 -4.71 13.75 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.27 -5.11 6.52 56.52 0.37 -4.74 16 22 N -0.40 -4.48 3.12 -120.07 -0.37 -4.86 16 23 C 0.05 0.55 10.51 59.85 0.63 1.18 16 24 C 0.11 1.07 11.17 -16.41 -0.18 0.88 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.16 1.41 8.05 -52.49 -0.42 0.99 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.37 7.35 5.76 -40.82 -0.24 7.12 16 32 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.12 1.54 6.07 -51.93 -0.32 1.23 16 35 H 0.09 0.68 8.13 -51.93 -0.42 0.25 16 36 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -33.50 327.81 -5.00 -38.50 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -3.91 Total: 7.93 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -0.87 Total: 11.20 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.34 Total: -41.60 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.79 Total: -34.71 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -4.71 Total: 13.75 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.50 -5.00 -38.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.051 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds