Wall clock time and date at job start Tue Mar 31 2020 03:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 N 1.46501 * 109.47014 * 180.02562 * 18 16 15 20 20 C 1.34776 * 120.00104 * 179.97438 * 19 18 16 21 21 O 1.21515 * 119.99969 * 0.02562 * 20 19 18 22 22 O 1.34636 * 120.00209 * 180.02562 * 20 19 18 23 23 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 24 24 C 1.38101 * 120.07425 * 359.95492 * 23 13 12 25 25 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 27 27 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 28 28 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 29 29 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 30 30 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 31 31 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 32 32 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 33 33 H 0.97004 * 120.00180 * 0.02562 * 19 18 16 34 34 H 0.96701 * 116.99694 * 180.02562 * 22 20 19 35 35 H 1.07999 * 119.96503 * 179.97438 * 23 13 12 36 36 H 1.07992 * 120.03608 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 7 6.4192 -10.5414 2.2884 20 6 6.7798 -11.2181 3.3967 21 8 6.4465 -10.8116 4.4922 22 8 7.5094 -12.3447 3.2900 23 6 4.2024 -4.5970 -0.2043 24 6 3.4573 -3.4394 -0.0951 25 1 -0.4850 0.8400 0.0004 26 1 0.3579 -4.7892 -0.2301 27 1 1.6954 -6.8451 -0.4339 28 1 3.8358 -7.8149 -1.0361 29 1 5.3320 -6.8560 -0.9360 30 1 4.2983 -7.1684 1.6738 31 1 6.1753 -8.5817 2.9944 32 1 4.6787 -9.5401 2.8951 33 1 6.6856 -10.8657 1.4138 34 1 7.7436 -12.7955 4.1128 35 1 5.2812 -4.5470 -0.1945 36 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738427043.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:03 Heat of formation + Delta-G solvation = -153.784256 kcal Electronic energy + Delta-G solvation = -21773.805049 eV Core-core repulsion = 18029.576924 eV Total energy + Delta-G solvation = -3744.228125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52028 -40.93014 -40.45547 -38.52186 -37.18354 -35.93091 -35.53204 -34.27947 -31.86559 -31.66711 -29.23907 -27.54757 -25.97071 -23.63544 -23.02039 -22.14223 -21.67204 -20.33761 -19.85740 -18.88437 -18.43297 -17.75595 -17.35640 -17.23272 -16.61765 -16.35693 -16.13601 -15.89005 -15.61313 -15.41786 -15.09145 -14.72935 -14.46206 -14.35164 -14.07364 -13.97104 -13.60691 -13.21518 -13.01951 -12.53888 -12.53402 -12.36588 -12.24761 -12.13670 -11.89717 -11.20122 -11.18863 -10.78612 -10.46625 -10.10859 -9.79389 -9.00316 -8.47899 -6.16088 0.53790 0.59490 1.27098 1.36253 1.46166 1.47639 1.51958 1.72385 2.17513 2.29122 2.85324 3.16839 3.50469 3.56904 3.80245 3.91831 4.04657 4.18975 4.29276 4.36462 4.48210 4.58315 4.76243 4.82309 5.04361 5.06116 5.15015 5.28254 5.34526 5.53991 5.70695 5.75812 5.78758 6.01980 6.17879 6.29543 6.47223 6.96909 7.09324 7.37459 7.76488 8.74610 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.031848 B = 0.002301 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.975995 B =12167.011259 C =12438.830014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.230 6.230 10 C 0.121 3.879 11 C -0.206 4.206 12 C -0.042 4.042 13 C -0.183 4.183 14 C 0.185 3.815 15 N -0.706 5.706 16 C 0.514 3.486 17 O -0.573 6.573 18 C 0.119 3.881 19 N -0.695 5.695 20 C 0.670 3.330 21 O -0.613 6.613 22 O -0.519 6.519 23 C -0.044 4.044 24 C -0.245 4.245 25 H 0.273 0.727 26 H 0.114 0.886 27 H 0.149 0.851 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.416 0.584 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.420 0.580 34 H 0.448 0.552 35 H 0.141 0.859 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.388 -18.517 3.931 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.136 6.136 10 C 0.070 3.930 11 C -0.226 4.226 12 C -0.061 4.061 13 C -0.185 4.185 14 C 0.062 3.938 15 N -0.358 5.358 16 C 0.301 3.699 17 O -0.453 6.453 18 C -0.007 4.007 19 N -0.358 5.358 20 C 0.422 3.578 21 O -0.506 6.506 22 O -0.331 6.331 23 C -0.063 4.063 24 C -0.265 4.265 25 H 0.082 0.918 26 H 0.132 0.868 27 H 0.167 0.833 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.253 0.747 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.259 0.741 34 H 0.312 0.688 35 H 0.159 0.841 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.047 -18.396 3.411 22.810 hybrid contribution -0.061 0.924 0.441 1.026 sum 12.986 -17.472 3.852 22.108 Atomic orbital electron populations 1.70169 1.08015 1.28915 1.48552 1.26585 0.96831 1.02787 0.95840 0.84660 0.77396 0.74332 0.79947 1.18210 1.19838 1.18077 1.21787 0.92564 0.81341 1.53252 0.87867 1.83946 1.36105 1.12691 1.80829 1.20033 0.91716 0.87962 0.93265 1.20464 1.00088 0.90509 1.11513 1.20906 0.93133 0.96960 0.95067 1.19493 0.93406 0.94148 1.11407 1.19934 0.98687 0.91401 0.83734 1.46033 1.53899 1.25350 1.10543 1.20544 0.77774 0.80750 0.90880 1.90712 1.52767 1.60492 1.41304 1.21112 0.98703 0.86500 0.94349 1.44179 1.56755 1.26315 1.08600 1.17644 0.77110 0.79564 0.83506 1.91066 1.61207 1.71136 1.27180 1.84169 1.67335 1.36937 1.44693 1.20965 0.99888 0.90728 0.94704 1.21259 0.92974 1.00195 1.12040 0.91820 0.86830 0.83297 0.90391 0.90637 0.74707 0.86433 0.86359 0.74113 0.68802 0.84104 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.07 13.67 21.62 0.30 -54.77 16 2 C -0.02 -1.24 5.49 84.84 0.47 -0.78 16 3 Si 1.02 41.49 29.55 68.60 2.03 43.52 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.41 -23.14 9.49 67.92 0.64 -22.50 16 8 H 0.10 5.24 5.20 -2.91 -0.02 5.23 16 9 O -0.23 -13.23 9.76 -22.72 -0.22 -13.45 16 10 C 0.12 5.60 6.65 22.58 0.15 5.75 16 11 C -0.21 -7.94 9.99 22.39 0.22 -7.72 16 12 C -0.04 -1.20 9.69 22.25 0.22 -0.98 16 13 C -0.18 -4.68 5.25 -19.84 -0.10 -4.79 16 14 C 0.19 3.66 5.80 85.63 0.50 4.16 16 15 N -0.71 -11.39 5.55 -466.80 -2.59 -13.98 16 16 C 0.51 8.89 7.90 87.66 0.69 9.59 16 17 O -0.57 -13.73 15.67 -3.02 -0.05 -13.77 16 18 C 0.12 1.62 6.15 85.63 0.53 2.15 16 19 N -0.70 -11.02 5.53 -594.60 -3.29 -14.31 16 20 C 0.67 11.80 9.12 129.79 1.18 12.99 16 21 O -0.61 -14.68 17.13 19.79 0.34 -14.34 16 22 O -0.52 -6.07 13.48 -55.45 -0.75 -6.82 16 23 C -0.04 -1.30 9.69 22.25 0.22 -1.09 16 24 C -0.25 -9.67 9.17 22.39 0.21 -9.47 16 25 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 26 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 27 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 28 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 29 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 30 H 0.42 5.45 8.46 -92.71 -0.78 4.66 16 31 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.12 1.34 8.14 -2.38 -0.02 1.33 16 33 H 0.42 6.67 7.55 -92.71 -0.70 5.97 16 34 H 0.45 1.12 9.11 -74.06 -0.67 0.44 16 35 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.12 4.84 5.64 -2.91 -0.02 4.82 16 Total: -1.00 -76.80 326.95 -0.31 -77.11 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.99 Total: 23.50 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 4.92 Total: -12.68 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -5.58 Total: -83.06 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.68 Total: -48.38 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -76.80 -0.31 -77.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738427043.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.674 kcal (2) G-P(sol) polarization free energy of solvation -76.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds