Wall clock time and date at job start Tue Mar 31 2020 03:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31319 * 1 3 3 Si 1.86797 * 120.00236 * 2 1 4 4 H 1.48499 * 109.47342 * 269.99811 * 3 2 1 5 5 H 1.48493 * 109.47085 * 30.00038 * 3 2 1 6 6 H 1.48501 * 109.47129 * 150.00047 * 3 2 1 7 7 C 1.39128 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00145 * 196.39455 * 7 2 1 9 9 N 1.36722 * 119.99690 * 16.39778 * 7 2 1 10 10 C 1.46496 * 120.00119 * 17.82940 * 9 7 2 11 11 C 1.50698 * 109.47342 * 263.68460 * 10 9 7 12 12 O 1.20823 * 120.00065 * 359.97438 * 11 10 9 13 13 O 1.34229 * 119.99907 * 180.02562 * 11 10 9 14 14 C 1.34769 * 119.99726 * 197.83652 * 9 7 2 15 15 O 1.21759 * 120.00331 * 359.97438 * 14 9 7 16 16 C 1.46226 * 120.00066 * 179.97438 * 14 9 7 17 17 C 1.34974 * 120.00491 * 186.78210 * 16 14 9 18 18 C 1.47159 * 119.99622 * 11.85130 * 17 16 14 19 19 C 1.39880 * 120.57920 * 41.54463 * 18 17 16 20 20 N 1.31608 * 120.57309 * 180.31759 * 19 18 17 21 21 C 1.31956 * 121.94117 * 359.71281 * 20 19 18 22 22 C 1.38596 * 121.10739 * 0.02562 * 21 20 19 23 23 F 1.35106 * 120.35766 * 179.97438 * 22 21 20 24 24 C 1.38536 * 119.28664 * 359.97438 * 22 21 20 25 25 H 0.97004 * 119.99870 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47158 * 23.68574 * 10 9 7 27 27 H 1.09001 * 109.46960 * 143.67816 * 10 9 7 28 28 H 0.96700 * 116.99955 * 179.97438 * 13 11 10 29 29 H 1.08006 * 119.99935 * 6.78193 * 16 14 9 30 30 H 1.08002 * 120.00549 * 191.84702 * 17 16 14 31 31 H 1.07997 * 119.70919 * 0.03279 * 19 18 17 32 32 H 1.07993 * 119.44859 * 179.97438 * 21 20 19 33 33 H 1.08000 * 120.87405 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 2.4948 2.0464 -1.4000 5 1 1.4448 2.6526 0.7000 6 1 3.5448 1.4401 0.7000 7 6 2.0088 -1.2049 0.0005 8 1 3.0558 -1.2238 0.2645 9 7 1.3668 -2.3650 -0.3332 10 6 0.0932 -2.3157 -1.0554 11 6 -1.0453 -2.4235 -0.0741 12 8 -0.8164 -2.5310 1.1074 13 8 -2.3137 -2.4012 -0.5126 14 6 1.9057 -3.5538 0.0024 15 8 2.9644 -3.5948 0.6023 16 6 1.2189 -4.7945 -0.3541 17 6 1.6845 -5.9778 0.0986 18 6 2.7127 -6.0099 1.1509 19 6 2.6431 -5.1357 2.2407 20 7 3.5660 -5.1603 3.1786 21 6 4.5813 -6.0021 3.1370 22 6 4.7210 -6.9045 2.0944 23 9 5.7669 -7.7594 2.0668 24 6 3.7768 -6.9205 1.0808 25 1 -0.4850 0.8401 -0.0004 26 1 0.0185 -1.3723 -1.5964 27 1 0.0439 -3.1443 -1.7619 28 1 -3.0102 -2.4737 0.1543 29 1 0.3389 -4.7642 -0.9796 30 1 1.3025 -6.9011 -0.3114 31 1 1.8273 -4.4315 2.3107 32 1 5.3162 -5.9872 3.9282 33 1 3.8608 -7.6126 0.2560 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739078126.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:31 Heat of formation + Delta-G solvation = -109.580449 kcal Electronic energy + Delta-G solvation = -23550.183672 eV Core-core repulsion = 19684.412063 eV Total energy + Delta-G solvation = -3865.771609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.085 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -49.91844 -41.45862 -40.84773 -39.79563 -37.14542 -36.41347 -35.09853 -33.82754 -32.67195 -30.83043 -29.53073 -27.26094 -25.16914 -24.65865 -23.09724 -22.52537 -19.98766 -19.06157 -18.87870 -18.55838 -18.01759 -17.96241 -17.68420 -17.20677 -16.76139 -16.50717 -16.19684 -15.89529 -15.26338 -14.92077 -14.78284 -14.63236 -14.16884 -14.07151 -13.77747 -13.60880 -13.37381 -13.23495 -13.01566 -12.65738 -12.42000 -12.20122 -12.11852 -11.52677 -11.30021 -10.97995 -10.75942 -10.43960 -10.25095 -9.85475 -9.13180 -8.48848 -5.97335 -0.42661 0.18001 0.79753 1.39849 1.40684 1.51453 1.76218 2.16018 2.34137 2.60570 2.74740 3.00106 3.09549 3.22975 3.53748 3.69203 3.83322 3.93103 4.00771 4.20600 4.35175 4.48497 4.79155 4.79504 4.85765 4.93897 5.02244 5.22737 5.38835 5.42933 5.72959 5.98345 6.02622 6.37859 6.94349 7.08315 7.28329 7.46984 7.94684 8.55461 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.005219 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.378420 B = 5363.300790 C = 6305.316481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.002 3.998 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.329 4.329 8 H 0.078 0.922 9 N -0.427 5.427 10 C 0.137 3.863 11 C 0.499 3.501 12 O -0.550 6.550 13 O -0.518 6.518 14 C 0.458 3.542 15 O -0.611 6.611 16 C -0.186 4.186 17 C -0.047 4.047 18 C -0.083 4.083 19 C 0.165 3.835 20 N -0.502 5.502 21 C 0.063 3.937 22 C 0.025 3.975 23 F -0.132 7.132 24 C -0.093 4.093 25 H 0.277 0.723 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.414 0.586 29 H 0.157 0.843 30 H 0.190 0.810 31 H 0.122 0.878 32 H 0.181 0.819 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 -11.113 -4.785 12.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.201 4.201 3 Si 0.815 3.185 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.457 4.457 8 H 0.096 0.904 9 N -0.144 5.144 10 C 0.011 3.989 11 C 0.341 3.659 12 O -0.439 6.439 13 O -0.330 6.330 14 C 0.251 3.749 15 O -0.499 6.499 16 C -0.207 4.207 17 C -0.068 4.068 18 C -0.085 4.085 19 C 0.006 3.994 20 N -0.212 5.212 21 C -0.094 4.094 22 C 0.003 3.997 23 F -0.111 7.111 24 C -0.119 4.119 25 H 0.087 0.913 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.273 0.727 29 H 0.175 0.825 30 H 0.207 0.793 31 H 0.140 0.860 32 H 0.198 0.802 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.675 -10.353 -3.795 11.154 hybrid contribution 0.065 0.771 0.206 0.800 sum -1.610 -9.583 -3.589 10.359 Atomic orbital electron populations 1.69752 1.06670 1.28946 1.47286 1.25959 0.96248 1.02279 0.95566 0.84957 0.77607 0.76856 0.79063 1.18232 1.20413 1.20784 1.19607 0.95195 0.84603 1.46341 0.90426 1.43535 1.17669 1.05418 1.47731 1.20974 0.79786 1.06281 0.91823 1.23745 0.83630 0.69413 0.89107 1.90617 1.85322 1.47414 1.20542 1.84445 1.16824 1.85857 1.45849 1.18860 0.87744 0.84987 0.83264 1.90660 1.26275 1.86992 1.45947 1.23316 1.01225 0.91718 1.04402 1.22455 0.92997 0.98795 0.92533 1.19956 0.97046 0.95538 0.96007 1.22643 0.95589 0.92250 0.88896 1.67552 1.03239 1.21434 1.28951 1.23187 0.96703 0.91464 0.98038 1.18558 0.88256 0.94048 0.98797 1.91487 1.54922 1.68180 1.96542 1.21941 0.92220 0.99143 0.98573 0.91278 0.85972 0.85606 0.72673 0.82533 0.79310 0.86037 0.80208 0.80282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.35 9.07 21.69 0.20 -44.15 16 2 C 0.00 0.08 5.00 84.98 0.42 0.51 16 3 Si 0.99 41.56 29.58 68.60 2.03 43.59 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.33 -17.96 9.35 84.14 0.79 -17.17 16 8 H 0.08 4.63 7.35 -2.91 -0.02 4.60 16 9 N -0.43 -20.65 2.17 -644.65 -1.40 -22.05 16 10 C 0.14 5.40 4.85 85.63 0.42 5.82 16 11 C 0.50 20.14 6.30 71.24 0.45 20.59 16 12 O -0.55 -27.21 16.84 21.97 0.37 -26.84 16 13 O -0.52 -16.01 13.42 -51.40 -0.69 -16.70 16 14 C 0.46 21.16 6.31 86.32 0.54 21.71 16 15 O -0.61 -32.49 11.74 -4.54 -0.05 -32.54 16 16 C -0.19 -6.14 8.99 23.60 0.21 -5.93 16 17 C -0.05 -1.29 9.85 23.86 0.24 -1.06 16 18 C -0.08 -2.81 4.61 -20.05 -0.09 -2.90 16 19 C 0.16 6.91 7.76 85.12 0.66 7.57 16 20 N -0.50 -20.75 10.34 -194.32 -2.01 -22.76 16 21 C 0.06 2.10 11.16 84.76 0.95 3.04 16 22 C 0.02 0.76 7.33 22.43 0.16 0.92 16 23 F -0.13 -3.64 17.28 44.97 0.78 -2.86 16 24 C -0.09 -2.65 9.93 22.83 0.23 -2.42 16 25 H 0.28 13.14 8.31 -92.71 -0.77 12.37 16 26 H 0.12 5.12 6.26 -2.39 -0.01 5.11 16 27 H 0.13 3.68 6.39 -2.39 -0.02 3.66 16 28 H 0.41 9.43 9.10 -74.06 -0.67 8.75 16 29 H 0.16 3.99 6.27 -2.91 -0.02 3.97 16 30 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.12 5.90 6.86 -2.91 -0.02 5.88 16 32 H 0.18 4.86 8.06 -2.91 -0.02 4.84 16 33 H 0.18 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -74.36 297.92 4.71 -69.65 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.52 Total: 23.98 kcal Atomic # 6 Polarization: 25.71 SS G_CDS: 4.97 Total: 30.68 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -3.21 Total: -88.96 kcal Atomic # 8 Polarization: -75.72 SS G_CDS: -0.37 Total: -76.09 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -74.36 4.71 -69.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078126.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.927 kcal (2) G-P(sol) polarization free energy of solvation -74.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds