Wall clock time and date at job start Tue Mar 31 2020 03:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29316 * 1 3 3 Si 1.86799 * 119.99860 * 2 1 4 4 H 1.48510 * 109.46881 * 274.66944 * 3 2 1 5 5 H 1.48492 * 109.47554 * 34.66999 * 3 2 1 6 6 H 1.48494 * 109.47125 * 154.67589 * 3 2 1 7 7 C 1.46783 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99948 * 343.04257 * 7 2 1 9 9 N 1.33326 * 119.99838 * 163.04412 * 7 2 1 10 10 C 1.46495 * 120.00282 * 321.05158 * 9 7 2 11 11 C 1.50697 * 109.47535 * 266.45751 * 10 9 7 12 12 O 1.20827 * 119.99826 * 359.97438 * 11 10 9 13 13 O 1.34224 * 120.00298 * 179.97438 * 11 10 9 14 14 C 1.34786 * 120.00015 * 141.05556 * 9 7 2 15 15 O 1.21463 * 119.99883 * 185.06151 * 14 9 7 16 16 C 1.47701 * 119.99583 * 5.05935 * 14 9 7 17 17 C 1.39682 * 120.15451 * 304.48773 * 16 14 9 18 18 C 1.37909 * 119.84577 * 180.02562 * 17 16 14 19 19 C 1.38397 * 120.14886 * 359.75183 * 18 17 16 20 20 C 1.38358 * 120.31443 * 0.50789 * 19 18 17 21 21 C 1.37953 * 120.15087 * 359.49040 * 20 19 18 22 22 N 1.48013 * 120.08028 * 180.27906 * 21 20 19 23 23 O 1.31696 * 119.99885 * 354.55744 * 22 21 20 24 24 O 1.31698 * 120.00007 * 174.56016 * 22 21 20 25 25 H 0.96999 * 119.99943 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47092 * 26.45765 * 10 9 7 27 27 H 1.09003 * 109.47468 * 146.45428 * 10 9 7 28 28 H 0.96707 * 117.00159 * 180.02562 * 13 11 10 29 29 H 1.08003 * 120.07760 * 0.02562 * 17 16 14 30 30 H 1.07997 * 119.92322 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.84374 * 180.27490 * 19 18 17 32 32 H 1.08001 * 119.92672 * 179.76359 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2271 1.6177 0.0000 4 1 2.3759 2.1034 -1.3955 5 1 1.4775 2.6222 0.7964 6 1 3.5705 1.4137 0.5988 7 6 2.0271 -1.2712 0.0006 8 1 1.5223 -2.1860 0.2738 9 7 3.3168 -1.2964 -0.3362 10 6 3.8055 -0.4511 -1.4282 11 6 3.7925 -1.2352 -2.7151 12 8 3.4143 -2.3828 -2.7194 13 8 4.2010 -0.6590 -3.8564 14 6 4.1712 -2.0998 0.3282 15 8 5.3603 -2.0558 0.0843 16 6 3.6614 -3.0335 1.3528 17 6 2.8995 -2.5550 2.4213 18 6 2.4272 -3.4325 3.3746 19 6 2.7022 -4.7849 3.2716 20 6 3.4607 -5.2652 2.2188 21 6 3.9395 -4.3988 1.2580 22 7 4.7456 -4.9151 0.1291 23 8 5.0972 -6.1838 0.0970 24 8 5.1113 -4.1056 -0.8433 25 1 -0.4850 0.8400 -0.0004 26 1 3.1607 0.4220 -1.5283 27 1 4.8234 -0.1278 -1.2100 28 1 4.1743 -1.2017 -4.6563 29 1 2.6809 -1.5004 2.5006 30 1 1.8377 -3.0639 4.2011 31 1 2.3260 -5.4683 4.0187 32 1 3.6747 -6.3213 2.1467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739088268.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:07 Heat of formation + Delta-G solvation = -40.266017 kcal Electronic energy + Delta-G solvation = -24393.298075 eV Core-core repulsion = 20518.159376 eV Total energy + Delta-G solvation = -3875.138699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.078 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -40.37398 -39.51088 -38.17137 -37.50583 -35.57713 -35.01021 -33.64445 -32.65367 -31.46974 -31.34093 -28.35730 -26.17664 -25.01033 -23.29959 -22.08369 -21.36526 -19.71479 -18.44956 -17.60034 -17.58766 -17.26044 -16.85808 -15.87566 -15.50863 -15.43613 -15.17886 -14.95349 -14.81959 -14.50120 -13.81920 -13.57960 -12.96053 -12.90512 -12.66756 -12.33337 -12.15326 -11.87947 -11.43340 -11.38207 -11.02134 -10.70434 -10.61846 -10.38944 -10.28400 -9.99779 -9.88133 -9.55851 -9.22161 -9.09716 -8.88968 -8.29836 -6.97146 -4.26138 -0.15690 1.14611 1.59621 1.78133 2.72337 2.87070 2.93214 2.99222 3.11643 3.45430 3.69770 3.85680 4.05377 4.51478 4.71915 4.90681 5.03298 5.20780 5.27914 5.46728 5.55868 5.80197 5.90347 5.95167 6.04970 6.16676 6.35609 6.42910 6.70055 6.77701 7.07394 7.46042 7.55575 7.91799 8.38876 8.55269 8.94217 9.38570 10.07254 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.008455 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.903793 B = 3311.000646 C = 4635.611453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.074 3.926 3 Si 0.867 3.133 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.248 1.248 7 C -0.379 4.379 8 H 0.105 0.895 9 N -0.405 5.405 10 C 0.104 3.896 11 C 0.462 3.538 12 O -0.485 6.485 13 O -0.528 6.528 14 C 0.513 3.487 15 O -0.555 6.555 16 C -0.012 4.012 17 C -0.061 4.061 18 C -0.083 4.083 19 C -0.119 4.119 20 C -0.069 4.069 21 C 0.017 3.983 22 N -0.024 5.024 23 O -0.235 6.235 24 O -0.100 6.100 25 H 0.289 0.711 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.401 0.599 29 H 0.158 0.842 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 0.184 5.136 5.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.144 4.144 3 Si 0.691 3.309 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.171 1.171 7 C -0.508 4.508 8 H 0.123 0.877 9 N -0.123 5.123 10 C -0.020 4.020 11 C 0.301 3.699 12 O -0.370 6.370 13 O -0.340 6.340 14 C 0.303 3.697 15 O -0.437 6.437 16 C -0.017 4.017 17 C -0.080 4.080 18 C -0.101 4.101 19 C -0.138 4.138 20 C -0.089 4.089 21 C -0.071 4.071 22 N 0.452 4.548 23 O -0.409 6.409 24 O -0.308 6.308 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.259 0.741 29 H 0.176 0.824 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.918 0.276 5.900 5.977 hybrid contribution 0.116 0.240 -1.114 1.146 sum 1.034 0.516 4.785 4.923 Atomic orbital electron populations 1.68691 1.07983 1.30039 1.36309 1.27067 0.94757 0.98826 0.93785 0.87061 0.82033 0.82258 0.79533 1.18871 1.20140 1.17082 1.19992 0.84772 0.94750 1.51241 0.87716 1.42011 1.08724 1.37335 1.24202 1.21453 1.03409 0.93824 0.83308 1.24181 0.73505 0.86853 0.85312 1.90716 1.42014 1.18284 1.85941 1.84537 1.80347 1.49776 1.19313 1.17674 0.85646 0.83929 0.82493 1.90701 1.15225 1.70175 1.67630 1.19858 0.94409 0.90762 0.96643 1.21494 0.93135 1.02218 0.91136 1.21506 0.97240 0.93118 0.98256 1.21165 0.98729 0.96145 0.97793 1.20880 0.95499 1.00402 0.92102 1.20282 1.03170 0.93229 0.90407 1.50316 0.99467 1.02311 1.02682 1.96173 1.62708 0.95005 1.87063 1.96404 1.56538 1.51624 1.26266 0.89873 0.87868 0.86659 0.74135 0.82434 0.84064 0.84054 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.05 13.88 56.00 0.78 -18.28 16 2 C 0.07 1.70 5.53 -15.16 -0.08 1.61 16 3 Si 0.87 16.93 24.94 -169.99 -4.24 12.69 16 4 H -0.26 -4.97 6.81 56.52 0.38 -4.58 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.25 -4.79 7.10 56.52 0.40 -4.39 16 7 C -0.38 -9.06 7.96 -13.45 -0.11 -9.16 16 8 H 0.11 2.72 7.05 -52.49 -0.37 2.35 16 9 N -0.40 -9.44 1.68 -115.67 -0.19 -9.63 16 10 C 0.10 2.23 4.66 -5.20 -0.02 2.21 16 11 C 0.46 9.90 8.37 36.00 0.30 10.20 16 12 O -0.49 -12.06 17.12 -18.75 -0.32 -12.38 16 13 O -0.53 -8.86 13.42 -39.24 -0.53 -9.39 16 14 C 0.51 12.14 5.57 -12.39 -0.07 12.07 16 15 O -0.56 -14.21 14.20 -18.95 -0.27 -14.48 16 16 C -0.01 -0.24 4.82 -104.97 -0.51 -0.75 16 17 C -0.06 -1.02 8.16 -39.16 -0.32 -1.34 16 18 C -0.08 -1.06 10.03 -39.64 -0.40 -1.46 16 19 C -0.12 -1.46 10.04 -39.48 -0.40 -1.85 16 20 C -0.07 -1.08 9.57 -39.64 -0.38 -1.46 16 21 C 0.02 0.34 6.89 -79.53 -0.55 -0.21 16 22 N -0.02 -0.57 4.98 34.17 0.17 -0.40 16 23 O -0.23 -5.30 19.17 -31.57 -0.61 -5.91 16 24 O -0.10 -2.61 15.52 -39.93 -0.62 -3.23 16 25 H 0.29 6.24 8.26 -40.82 -0.34 5.90 16 26 H 0.10 2.10 3.29 -51.93 -0.17 1.93 16 27 H 0.12 2.30 7.46 -51.93 -0.39 1.91 16 28 H 0.40 4.86 9.10 45.56 0.41 5.27 16 29 H 0.16 2.58 7.45 -52.48 -0.39 2.19 16 30 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 32 H 0.15 2.05 7.59 -52.49 -0.40 1.65 16 LS Contribution 293.85 15.07 4.43 4.43 Total: -1.00 -32.49 293.85 -5.23 -37.71 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -1.30 Total: 9.00 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -2.53 Total: 9.86 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: 0.75 Total: -28.31 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -2.34 Total: -45.38 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -4.24 Total: 12.69 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.49 -5.23 -37.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088268.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.553 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds