Wall clock time and date at job start Tue Mar 31 2020 03:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99757 * 2 1 4 4 H 1.48504 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47190 * 300.00041 * 3 2 1 6 6 H 1.48496 * 109.47249 * 60.00135 * 3 2 1 7 7 C 1.37878 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99916 * 186.11169 * 7 2 1 9 9 C 1.50701 * 119.99626 * 6.39360 * 7 2 1 10 10 C 1.52999 * 115.54913 * 274.88524 * 9 7 2 11 11 O 1.45207 * 109.47305 * 294.89081 * 10 9 7 12 12 C 1.34224 * 117.00145 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99965 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99958 * 180.02562 * 12 11 10 15 15 N 1.46499 * 109.46973 * 179.97438 * 14 12 11 16 16 C 1.36168 * 119.85274 * 89.99844 * 15 14 12 17 17 C 1.35547 * 119.25660 * 179.97438 * 16 15 14 18 18 C 1.40738 * 118.99962 * 0.02562 * 17 16 15 19 19 O 1.35158 * 120.16458 * 179.97438 * 18 17 16 20 20 N 1.32427 * 119.66859 * 359.97438 * 18 17 16 21 21 C 1.33272 * 120.72923 * 359.73914 * 20 18 17 22 22 O 1.21978 * 119.47658 * 180.28054 * 21 20 18 23 23 C 1.53006 * 117.49654 * 129.22379 * 9 7 2 24 24 C 1.52997 * 117.50324 * 60.56017 * 9 7 2 25 25 H 0.96995 * 120.00267 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47042 * 54.89004 * 10 9 7 27 27 H 1.08998 * 109.47114 * 174.89243 * 10 9 7 28 28 H 1.09002 * 109.47048 * 299.99593 * 14 12 11 29 29 H 1.08995 * 109.47282 * 60.00032 * 14 12 11 30 30 H 1.08002 * 120.37387 * 0.02562 * 16 15 14 31 31 H 1.08000 * 120.49707 * 179.97438 * 17 16 15 32 32 H 0.96699 * 113.99818 * 180.02562 * 19 18 17 33 33 H 1.08998 * 117.49874 * 359.97438 * 23 9 7 34 34 H 1.08995 * 117.49819 * 145.01858 * 23 9 7 35 35 H 1.08998 * 117.50062 * 214.97901 * 24 9 7 36 36 H 1.09000 * 117.49878 * 359.97404 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0799 -1.1967 0.0990 9 6 1.2580 -2.4950 -0.1465 10 6 0.6970 -3.0829 1.1499 11 8 1.7929 -3.4500 2.0290 12 6 1.4686 -3.9840 3.2169 13 8 0.3074 -4.1401 3.5123 14 6 2.5526 -4.3890 4.1822 15 7 1.9448 -4.9399 5.3960 16 6 1.6864 -6.2743 5.4790 17 6 1.1243 -6.7712 6.6079 18 6 0.8226 -5.8914 7.6642 19 8 0.2613 -6.3615 8.8003 20 7 1.0914 -4.6008 7.5394 21 6 1.6495 -4.1260 6.4261 22 8 1.8921 -2.9338 6.3376 23 6 1.7504 -3.4763 -1.2121 24 6 0.4462 -2.7040 -1.4263 25 1 -0.4850 0.8400 0.0004 26 1 0.0685 -2.3413 1.6430 27 1 0.1033 -3.9677 0.9205 28 1 3.1882 -5.1437 3.7190 29 1 3.1533 -3.5170 4.4407 30 1 1.9274 -6.9295 4.6550 31 1 0.9104 -7.8262 6.6951 32 1 0.0918 -5.6810 9.4660 33 1 2.6140 -3.1808 -1.8079 34 1 1.6742 -4.5406 -0.9898 35 1 -0.4875 -3.2606 -1.3448 36 1 0.4516 -1.9004 -2.1627 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:34 Heat of formation + Delta-G solvation = -79.674035 kcal Electronic energy + Delta-G solvation = -23203.572032 eV Core-core repulsion = 19462.557567 eV Total energy + Delta-G solvation = -3741.014465 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.01033 -39.91793 -38.84168 -37.03017 -36.73415 -35.44175 -34.69792 -31.99309 -31.55946 -29.05487 -26.68728 -25.31818 -24.98468 -23.56728 -21.34630 -20.82463 -19.97100 -19.34360 -18.37099 -17.73980 -17.45483 -16.54770 -16.15672 -15.98340 -15.70309 -15.29145 -14.91531 -14.63705 -14.30150 -14.19137 -13.87431 -13.58250 -13.31810 -12.79939 -12.43142 -12.03446 -11.97218 -11.66996 -11.01110 -10.93711 -10.89862 -10.61602 -10.51902 -10.36708 -10.16196 -10.02131 -9.99325 -9.64192 -8.88607 -8.82123 -8.50584 -8.27929 -6.09928 -4.15742 0.42376 1.49817 2.02367 2.44751 2.92875 3.08839 3.28525 3.37442 3.40598 3.69518 3.99695 4.24263 4.38328 4.51819 4.77505 4.89482 5.07393 5.08570 5.20056 5.20669 5.36345 5.82090 5.87100 6.11780 6.14524 6.24407 6.42630 6.54410 6.64346 6.78569 6.96095 7.07626 7.28483 7.38555 7.60704 7.84095 8.01234 8.13182 8.33960 8.86491 9.51232 10.99516 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.022962 B = 0.003734 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.097995 B = 7497.520712 C = 8183.248544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.493 4.493 8 H 0.065 0.935 9 C 0.037 3.963 10 C 0.117 3.883 11 O -0.330 6.330 12 C 0.442 3.558 13 O -0.512 6.512 14 C 0.102 3.898 15 N -0.514 5.514 16 C 0.213 3.787 17 C -0.287 4.287 18 C 0.458 3.542 19 O -0.449 6.449 20 N -0.612 5.612 21 C 0.659 3.341 22 O -0.522 6.522 23 C -0.204 4.204 24 C -0.145 4.145 25 H 0.262 0.738 26 H 0.078 0.922 27 H 0.040 0.960 28 H 0.137 0.863 29 H 0.146 0.854 30 H 0.184 0.816 31 H 0.165 0.835 32 H 0.417 0.583 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.043 -16.940 10.625 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.530 4.530 8 H 0.083 0.917 9 C 0.037 3.963 10 C 0.044 3.956 11 O -0.244 6.244 12 C 0.283 3.717 13 O -0.401 6.401 14 C -0.022 4.022 15 N -0.231 5.231 16 C 0.077 3.923 17 C -0.314 4.314 18 C 0.256 3.744 19 O -0.244 6.244 20 N -0.369 5.369 21 C 0.361 3.639 22 O -0.395 6.395 23 C -0.242 4.242 24 C -0.182 4.182 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.154 0.846 29 H 0.163 0.837 30 H 0.201 0.799 31 H 0.183 0.817 32 H 0.274 0.726 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.581 -15.847 10.885 19.556 hybrid contribution 0.056 0.804 -0.201 0.830 sum 3.637 -15.044 10.684 18.807 Atomic orbital electron populations 1.69996 1.05968 1.26764 1.48966 1.25024 0.94867 0.99221 0.94314 0.86516 0.80304 0.83499 0.77654 1.19513 1.20904 1.20904 1.20415 0.93149 0.88259 1.51183 0.91713 1.18782 0.98977 0.94278 0.84290 1.23012 0.85614 0.97101 0.89866 1.86498 1.41929 1.70534 1.25463 1.23432 0.89611 0.75635 0.83035 1.90675 1.21047 1.51771 1.76624 1.21384 0.93864 1.04536 0.82426 1.46138 1.52423 1.07980 1.16600 1.22377 0.87918 0.84322 0.97653 1.20576 1.14816 1.02524 0.93444 1.20429 0.80490 0.88315 0.85147 1.84974 1.74309 1.40153 1.24949 1.69665 1.28792 1.13366 1.25055 1.17304 0.79970 0.86843 0.79778 1.91063 1.55286 1.12812 1.80293 1.23013 0.98471 0.95581 1.07090 1.22553 0.92467 1.01286 1.01913 0.92869 0.90375 0.94168 0.84562 0.83661 0.79881 0.81704 0.72624 0.89961 0.91565 0.91632 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.03 12.93 55.43 0.72 -24.31 16 2 C 0.07 1.90 5.39 -17.82 -0.10 1.80 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.49 -13.31 8.77 -34.44 -0.30 -13.61 16 8 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 9 C 0.04 0.90 1.61 -155.66 -0.25 0.65 16 10 C 0.12 2.71 5.29 37.16 0.20 2.91 16 11 O -0.33 -6.82 10.16 -39.24 -0.40 -7.22 16 12 C 0.44 7.95 8.02 36.00 0.29 8.24 16 13 O -0.51 -10.77 16.18 -18.75 -0.30 -11.07 16 14 C 0.10 1.26 5.94 -5.19 -0.03 1.23 16 15 N -0.51 -6.55 2.08 -123.16 -0.26 -6.80 16 16 C 0.21 1.73 10.40 -16.59 -0.17 1.55 16 17 C -0.29 -2.27 10.03 -39.60 -0.40 -2.67 16 18 C 0.46 4.82 7.91 -16.35 -0.13 4.69 16 19 O -0.45 -3.41 13.55 -17.17 -0.23 -3.64 16 20 N -0.61 -9.08 10.40 -16.72 -0.17 -9.25 16 21 C 0.66 11.18 8.34 -88.44 -0.74 10.44 16 22 O -0.52 -11.13 16.72 4.94 0.08 -11.05 16 23 C -0.20 -4.24 9.96 -26.69 -0.27 -4.51 16 24 C -0.14 -3.27 9.43 -26.69 -0.25 -3.52 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.08 2.07 8.13 -51.93 -0.42 1.65 16 27 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 28 H 0.14 0.92 8.03 -51.93 -0.42 0.50 16 29 H 0.15 1.89 7.37 -51.93 -0.38 1.50 16 30 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.42 1.81 8.98 45.56 0.41 2.22 16 33 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -37.76 329.38 -6.09 -43.85 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -3.32 Total: 1.04 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -2.15 Total: 7.22 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.29 Total: -40.37 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.85 Total: -32.98 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.76 -6.09 -43.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.827 kcal (2) G-P(sol) polarization free energy of solvation -37.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds