Wall clock time and date at job start Tue Mar 31 2020 03:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99757 * 2 1 4 4 H 1.48504 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47190 * 300.00041 * 3 2 1 6 6 H 1.48496 * 109.47249 * 60.00135 * 3 2 1 7 7 C 1.37878 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99916 * 186.11169 * 7 2 1 9 9 C 1.50701 * 119.99626 * 6.39360 * 7 2 1 10 10 C 1.52999 * 115.54913 * 274.88524 * 9 7 2 11 11 O 1.45207 * 109.47305 * 294.89081 * 10 9 7 12 12 C 1.34224 * 117.00145 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99965 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99958 * 180.02562 * 12 11 10 15 15 N 1.46499 * 109.46973 * 179.97438 * 14 12 11 16 16 C 1.36168 * 119.85274 * 89.99844 * 15 14 12 17 17 C 1.35547 * 119.25660 * 179.97438 * 16 15 14 18 18 C 1.40738 * 118.99962 * 0.02562 * 17 16 15 19 19 O 1.35158 * 120.16458 * 179.97438 * 18 17 16 20 20 N 1.32427 * 119.66859 * 359.97438 * 18 17 16 21 21 C 1.33272 * 120.72923 * 359.73914 * 20 18 17 22 22 O 1.21978 * 119.47658 * 180.28054 * 21 20 18 23 23 C 1.53006 * 117.49654 * 129.22379 * 9 7 2 24 24 C 1.52997 * 117.50324 * 60.56017 * 9 7 2 25 25 H 0.96995 * 120.00267 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47042 * 54.89004 * 10 9 7 27 27 H 1.08998 * 109.47114 * 174.89243 * 10 9 7 28 28 H 1.09002 * 109.47048 * 299.99593 * 14 12 11 29 29 H 1.08995 * 109.47282 * 60.00032 * 14 12 11 30 30 H 1.08002 * 120.37387 * 0.02562 * 16 15 14 31 31 H 1.08000 * 120.49707 * 179.97438 * 17 16 15 32 32 H 0.96699 * 113.99818 * 180.02562 * 19 18 17 33 33 H 1.08998 * 117.49874 * 359.97438 * 23 9 7 34 34 H 1.08995 * 117.49819 * 145.01858 * 23 9 7 35 35 H 1.08998 * 117.50062 * 214.97901 * 24 9 7 36 36 H 1.09000 * 117.49878 * 359.97404 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0799 -1.1967 0.0990 9 6 1.2580 -2.4950 -0.1465 10 6 0.6970 -3.0829 1.1499 11 8 1.7929 -3.4500 2.0290 12 6 1.4686 -3.9840 3.2169 13 8 0.3074 -4.1401 3.5123 14 6 2.5526 -4.3890 4.1822 15 7 1.9448 -4.9399 5.3960 16 6 1.6864 -6.2743 5.4790 17 6 1.1243 -6.7712 6.6079 18 6 0.8226 -5.8914 7.6642 19 8 0.2613 -6.3615 8.8003 20 7 1.0914 -4.6008 7.5394 21 6 1.6495 -4.1260 6.4261 22 8 1.8921 -2.9338 6.3376 23 6 1.7504 -3.4763 -1.2121 24 6 0.4462 -2.7040 -1.4263 25 1 -0.4850 0.8400 0.0004 26 1 0.0685 -2.3413 1.6430 27 1 0.1033 -3.9677 0.9205 28 1 3.1882 -5.1437 3.7190 29 1 3.1533 -3.5170 4.4407 30 1 1.9274 -6.9295 4.6550 31 1 0.9104 -7.8262 6.6951 32 1 0.0918 -5.6810 9.4660 33 1 2.6140 -3.1808 -1.8079 34 1 1.6742 -4.5406 -0.9898 35 1 -0.4875 -3.2606 -1.3448 36 1 0.4516 -1.9004 -2.1627 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744276978.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:34 Heat of formation + Delta-G solvation = -110.492985 kcal Electronic energy + Delta-G solvation = -23204.908442 eV Core-core repulsion = 19462.557567 eV Total energy + Delta-G solvation = -3742.350875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.99308 -41.35276 -39.71892 -38.65405 -37.91565 -37.04367 -35.67134 -34.04712 -32.43999 -30.22744 -28.33717 -27.24816 -25.84832 -24.59403 -23.01273 -22.23203 -21.22340 -20.81111 -19.17791 -19.04067 -18.71734 -18.11428 -17.51634 -17.40462 -16.85199 -16.68883 -16.52307 -15.70771 -15.60370 -15.21498 -14.96239 -14.83080 -14.41510 -14.23532 -13.96525 -13.58309 -13.37822 -13.11868 -12.95664 -12.85550 -12.41030 -12.10314 -12.08164 -11.86201 -11.74774 -11.49994 -11.23546 -11.02090 -10.79727 -10.52053 -10.10230 -9.75531 -8.17543 -6.28018 -0.36123 0.64083 1.00453 1.08564 1.37456 1.41075 1.51182 1.80657 2.23870 2.39738 2.66653 3.12563 3.24439 3.35814 3.55125 3.71248 3.76916 4.06743 4.11331 4.17728 4.36108 4.40692 4.45446 4.55439 4.63765 4.81046 4.98525 5.15774 5.19064 5.28706 5.42205 5.57928 5.63086 5.72880 6.12738 6.32651 6.57891 6.66543 6.78704 6.98694 7.41513 8.91364 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.022962 B = 0.003734 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.097995 B = 7497.520712 C = 8183.248544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.290 1.290 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.000 4.000 10 C 0.131 3.869 11 O -0.337 6.337 12 C 0.438 3.562 13 O -0.547 6.547 14 C 0.113 3.887 15 N -0.518 5.518 16 C 0.213 3.787 17 C -0.278 4.278 18 C 0.457 3.543 19 O -0.438 6.438 20 N -0.656 5.656 21 C 0.648 3.352 22 O -0.593 6.593 23 C -0.168 4.168 24 C -0.150 4.150 25 H 0.260 0.740 26 H 0.029 0.971 27 H 0.057 0.943 28 H 0.206 0.794 29 H 0.136 0.864 30 H 0.242 0.758 31 H 0.208 0.792 32 H 0.430 0.570 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.379 -20.337 10.375 23.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.217 1.217 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.000 4.000 10 C 0.057 3.943 11 O -0.251 6.251 12 C 0.282 3.718 13 O -0.438 6.438 14 C -0.010 4.010 15 N -0.234 5.234 16 C 0.080 3.920 17 C -0.303 4.303 18 C 0.258 3.742 19 O -0.234 6.234 20 N -0.416 5.416 21 C 0.350 3.650 22 O -0.472 6.472 23 C -0.205 4.205 24 C -0.188 4.188 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.223 0.777 29 H 0.153 0.847 30 H 0.258 0.742 31 H 0.225 0.775 32 H 0.289 0.711 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.918 -19.343 10.660 22.627 hybrid contribution -0.413 1.689 0.009 1.739 sum 4.505 -17.654 10.669 21.114 Atomic orbital electron populations 1.70104 1.07188 1.27160 1.50461 1.25731 0.95573 1.02244 0.94402 0.85644 0.79621 0.79953 0.77348 1.18507 1.20163 1.21677 1.20727 0.93115 0.89889 1.50323 0.92325 1.18857 1.00817 0.94877 0.85465 1.22537 0.85812 0.96394 0.89538 1.86493 1.40908 1.71108 1.26637 1.24579 0.90665 0.74084 0.82491 1.90656 1.23059 1.53188 1.76941 1.21652 0.91827 1.06507 0.81049 1.46013 1.52404 1.09508 1.15484 1.23413 0.86555 0.82597 0.99401 1.21147 1.13071 1.03995 0.92109 1.20896 0.79371 0.87505 0.86404 1.84982 1.73414 1.40415 1.24577 1.69503 1.30781 1.16044 1.25238 1.17543 0.79876 0.86571 0.81001 1.90993 1.58637 1.15707 1.81842 1.23033 0.97164 0.96551 1.03735 1.22495 0.94173 1.01524 1.00604 0.93155 0.95201 0.92449 0.77691 0.84660 0.74151 0.77530 0.71071 0.89457 0.88256 0.90380 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.38 12.93 21.45 0.28 -53.10 16 2 C 0.02 1.15 5.39 84.65 0.46 1.61 16 3 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.50 -27.43 8.77 25.60 0.22 -27.21 16 8 H 0.06 3.18 7.82 -2.91 -0.02 3.15 16 9 C 0.00 0.01 1.61 -52.93 -0.08 -0.07 16 10 C 0.13 6.12 5.29 71.98 0.38 6.50 16 11 O -0.34 -13.73 10.16 -51.36 -0.52 -14.25 16 12 C 0.44 15.40 8.02 71.24 0.57 15.97 16 13 O -0.55 -23.06 16.18 21.95 0.36 -22.70 16 14 C 0.11 2.54 5.94 85.63 0.51 3.05 16 15 N -0.52 -12.19 2.08 -661.78 -1.38 -13.57 16 16 C 0.21 2.52 10.40 83.40 0.87 3.39 16 17 C -0.28 -3.25 10.03 22.26 0.22 -3.03 16 18 C 0.46 8.76 7.91 85.21 0.67 9.43 16 19 O -0.44 -5.70 13.55 -84.36 -1.14 -6.84 16 20 N -0.66 -19.65 10.40 -438.81 -4.56 -24.21 16 21 C 0.65 22.38 8.34 179.58 1.50 23.88 16 22 O -0.59 -26.87 16.72 -5.24 -0.09 -26.96 16 23 C -0.17 -6.56 9.96 30.62 0.30 -6.25 16 24 C -0.15 -6.71 9.43 30.62 0.29 -6.43 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.03 1.65 8.13 -2.39 -0.02 1.63 16 27 H 0.06 2.42 8.08 -2.39 -0.02 2.40 16 28 H 0.21 1.64 8.03 -2.39 -0.02 1.62 16 29 H 0.14 3.45 7.37 -2.39 -0.02 3.43 16 30 H 0.24 -0.10 8.06 -2.91 -0.02 -0.12 16 31 H 0.21 0.67 8.06 -2.91 -0.02 0.65 16 32 H 0.43 3.20 8.98 -74.06 -0.66 2.54 16 33 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -89.50 329.38 1.34 -88.16 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 0.46 Total: 6.14 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 5.91 Total: 20.83 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -5.66 Total: -90.88 kcal Atomic # 8 Polarization: -69.35 SS G_CDS: -1.40 Total: -70.75 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -89.50 1.34 -88.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276978.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.337 kcal (2) G-P(sol) polarization free energy of solvation -89.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds