Wall clock time and date at job start Tue Mar 31 2020 04:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34911 * 119.69802 * 2 1 4 4 C 1.38416 * 119.01211 * 179.97438 * 3 2 1 5 5 C 1.47155 * 120.74371 * 180.02562 * 4 3 2 6 6 O 1.21544 * 120.00121 * 354.46665 * 5 4 3 7 7 O 1.34780 * 119.99935 * 174.45832 * 5 4 3 8 8 C 1.45201 * 116.99778 * 185.68383 * 7 5 4 9 9 C 1.53004 * 109.47070 * 183.85589 * 8 7 5 10 10 C 1.50696 * 115.55053 * 184.04642 * 9 8 7 11 11 H 1.08003 * 119.99596 * 143.13039 * 10 9 8 12 12 C 1.37873 * 120.00081 * 323.12214 * 10 9 8 13 13 N 1.31517 * 120.00171 * 168.90192 * 12 10 9 14 14 Si 1.86805 * 120.00076 * 348.90993 * 12 10 9 15 15 H 1.48499 * 109.46931 * 95.50618 * 14 12 10 16 16 H 1.48503 * 109.47012 * 215.50679 * 14 12 10 17 17 H 1.48504 * 109.46977 * 335.50731 * 14 12 10 18 18 C 1.52999 * 117.49586 * 38.37417 * 9 8 7 19 19 C 1.53003 * 117.49475 * 329.71864 * 9 8 7 20 20 C 1.42147 * 118.51187 * 359.97438 * 4 3 2 21 21 O 1.35006 * 120.33783 * 179.97438 * 20 4 3 22 22 N 1.32209 * 119.32088 * 0.02562 * 20 4 3 23 23 C 1.33327 * 120.93529 * 359.74180 * 22 20 4 24 24 O 1.21907 * 119.19019 * 180.25562 * 23 22 20 25 25 H 1.08997 * 109.47061 * 90.00173 * 1 2 3 26 26 H 1.09000 * 109.47136 * 329.99913 * 1 2 3 27 27 H 1.09002 * 109.46750 * 209.99636 * 1 2 3 28 28 H 1.07997 * 120.49718 * 359.95379 * 3 2 1 29 29 H 1.08996 * 109.47177 * 303.85456 * 8 7 5 30 30 H 1.08999 * 109.47352 * 63.85739 * 8 7 5 31 31 H 0.96993 * 120.00074 * 180.02562 * 13 12 10 32 32 H 1.09000 * 117.50089 * 0.02562 * 18 9 8 33 33 H 1.09001 * 117.49749 * 145.02443 * 18 9 8 34 34 H 1.08999 * 117.49348 * 214.97956 * 19 9 8 35 35 H 1.08999 * 117.50059 * 359.97080 * 19 9 8 36 36 H 0.96696 * 113.99879 * 185.07939 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1334 1.1719 0.0000 4 6 3.5175 1.1553 0.0005 5 6 4.2848 2.4110 0.0011 6 8 3.7078 3.4759 -0.1004 7 8 5.6275 2.3802 0.1144 8 6 6.3083 3.6570 0.2354 9 6 7.8210 3.4284 0.2560 10 6 8.6615 4.6601 0.4738 11 1 9.5629 4.6009 1.0658 12 6 8.2799 5.8624 -0.0827 13 7 8.8808 6.9748 0.2792 14 14 6.9090 5.9114 -1.3508 15 1 5.6242 6.2320 -0.6786 16 1 7.2103 6.9531 -2.3654 17 1 6.8028 4.5881 -2.0163 18 6 8.3839 2.3424 -0.6630 19 6 8.3286 2.1127 0.8493 20 6 4.1810 -0.1018 0.0016 21 8 5.5298 -0.1609 0.0017 22 7 3.4638 -1.2124 0.0016 23 6 2.1313 -1.1678 0.0057 24 8 1.5014 -2.2116 0.0103 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5138 28 1 1.5966 2.1090 -0.0008 29 1 6.0479 4.2894 -0.6132 30 1 6.0021 4.1457 1.1603 31 1 8.6121 7.8207 -0.1120 32 1 7.6766 1.7911 -1.2826 33 1 9.3624 2.5187 -1.1098 34 1 9.2707 2.1379 1.3969 35 1 7.5849 1.4101 1.2254 36 1 5.8841 -1.0573 -0.0758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277069.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:49 Heat of formation + Delta-G solvation = -65.737440 kcal Electronic energy + Delta-G solvation = -23833.600962 eV Core-core repulsion = 20093.190833 eV Total energy + Delta-G solvation = -3740.410128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.25624 -40.08193 -38.90881 -37.46154 -36.93076 -35.32262 -35.00004 -32.29380 -31.89766 -28.36725 -27.67129 -25.82988 -24.92328 -24.06618 -21.48863 -21.34207 -20.11605 -19.17412 -18.75438 -18.07526 -17.11202 -17.01350 -16.75672 -16.06118 -15.93540 -15.43078 -14.90745 -14.70487 -14.52914 -14.15674 -13.75240 -13.73305 -13.39747 -13.15546 -12.83889 -12.67687 -12.01464 -11.83397 -11.35471 -11.15965 -10.84163 -10.66613 -10.46541 -10.45058 -10.39288 -10.16719 -9.74425 -9.53657 -9.26870 -9.09424 -8.71533 -8.36076 -6.27657 -4.22343 0.12050 0.85255 1.79369 2.63602 2.83895 2.90177 3.21058 3.30422 3.32462 3.40297 3.73970 4.01640 4.25094 4.34577 4.51153 4.69385 4.72758 4.75483 5.05215 5.10277 5.33703 5.49200 5.69888 5.76636 5.81870 5.96532 6.22388 6.52209 6.62496 6.69543 6.84975 6.89102 7.00106 7.25308 7.32568 7.59286 7.71157 7.93786 8.38218 8.77500 9.34634 10.84387 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.004500 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.352689 B = 6220.662120 C = 7003.607525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.520 5.520 3 C 0.275 3.725 4 C -0.284 4.284 5 C 0.525 3.475 6 O -0.518 6.518 7 O -0.326 6.326 8 C 0.087 3.913 9 C 0.003 3.997 10 C -0.482 4.482 11 H 0.086 0.914 12 C 0.078 3.922 13 N -0.885 5.885 14 Si 0.872 3.128 15 H -0.272 1.272 16 H -0.291 1.291 17 H -0.258 1.258 18 C -0.197 4.197 19 C -0.175 4.175 20 C 0.492 3.508 21 O -0.408 6.408 22 N -0.616 5.616 23 C 0.655 3.345 24 O -0.525 6.525 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.201 0.799 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.268 0.732 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.454 -11.783 -1.034 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.233 5.233 3 C 0.134 3.866 4 C -0.295 4.295 5 C 0.368 3.632 6 O -0.410 6.410 7 O -0.240 6.240 8 C 0.015 3.985 9 C 0.002 3.998 10 C -0.519 4.519 11 H 0.104 0.896 12 C -0.126 4.126 13 N -0.520 5.520 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.218 1.218 17 H -0.184 1.184 18 C -0.234 4.234 19 C -0.213 4.213 20 C 0.290 3.710 21 O -0.200 6.200 22 N -0.375 5.375 23 C 0.357 3.643 24 O -0.399 6.399 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.217 0.783 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -15.727 -12.221 -1.033 19.944 hybrid contribution -0.835 0.521 -0.764 1.246 sum -16.562 -11.700 -1.797 20.357 Atomic orbital electron populations 1.22364 0.75150 1.05971 1.04927 1.46321 1.11190 1.07081 1.58688 1.22771 0.91339 0.91579 0.80915 1.18766 0.91817 0.91873 1.27029 1.19957 0.82561 0.87228 0.73419 1.90868 1.71353 1.31497 1.47249 1.86627 1.17915 1.37725 1.81768 1.23621 0.92381 0.80743 1.01761 1.19353 0.87754 0.91244 1.01496 1.20312 1.08988 0.89517 1.33072 0.89641 1.25004 0.96349 0.95344 0.95940 1.69891 1.42332 0.98225 1.41587 0.87153 0.82227 0.77643 0.82713 1.19888 1.21820 1.18430 1.23079 1.01972 1.06088 0.92304 1.22737 1.01775 1.00813 0.95931 1.20377 0.85230 0.88222 0.77139 1.85271 1.13559 1.37137 1.84002 1.69741 1.05247 1.27292 1.35181 1.17520 0.84830 0.82952 0.79036 1.90995 1.65950 1.29951 1.52990 0.89605 0.88754 0.87853 0.78260 0.91628 0.90588 0.92150 0.90823 0.89958 0.90238 0.89873 0.72573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 10.35 59.85 0.62 0.91 16 2 N -0.52 -4.73 2.96 -128.85 -0.38 -5.11 16 3 C 0.28 2.41 9.96 -16.13 -0.16 2.25 16 4 C -0.28 -3.52 5.90 -104.71 -0.62 -4.13 16 5 C 0.52 8.62 7.87 34.35 0.27 8.89 16 6 O -0.52 -9.51 16.12 -19.30 -0.31 -9.82 16 7 O -0.33 -6.07 6.63 -47.83 -0.32 -6.38 16 8 C 0.09 1.91 4.30 37.16 0.16 2.07 16 9 C 0.00 0.06 1.81 -155.66 -0.28 -0.22 16 10 C -0.48 -13.12 9.57 -34.44 -0.33 -13.45 16 11 H 0.09 2.50 8.06 -52.48 -0.42 2.07 16 12 C 0.08 2.16 5.43 -17.82 -0.10 2.07 16 13 N -0.88 -26.01 13.96 55.43 0.77 -25.24 16 14 Si 0.87 21.41 24.23 -169.99 -4.12 17.29 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.26 -6.16 6.38 56.52 0.36 -5.80 16 18 C -0.20 -4.06 9.66 -26.69 -0.26 -4.32 16 19 C -0.18 -3.49 9.63 -26.69 -0.26 -3.74 16 20 C 0.49 6.06 7.93 -15.89 -0.13 5.94 16 21 O -0.41 -4.65 11.67 -37.91 -0.44 -5.09 16 22 N -0.62 -8.25 10.38 -16.46 -0.17 -8.42 16 23 C 0.65 8.71 8.32 -88.50 -0.74 7.97 16 24 O -0.52 -8.44 16.66 5.00 0.08 -8.36 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.17 8.02 -51.93 -0.42 -0.24 16 27 H 0.10 0.62 7.35 -51.93 -0.38 0.23 16 28 H 0.20 1.10 7.69 -52.49 -0.40 0.70 16 29 H 0.07 1.55 2.39 -51.93 -0.12 1.42 16 30 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 1.42 7.79 -51.93 -0.40 1.02 16 33 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.08 1.50 7.53 -51.93 -0.39 1.11 16 36 H 0.42 2.86 8.98 45.56 0.41 3.27 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -35.68 312.63 -4.99 -40.67 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.00 Total: 1.50 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.81 Total: 4.23 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.22 Total: -38.76 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.99 Total: -29.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.12 Total: 17.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.68 -4.99 -40.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277069.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.062 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds