Wall clock time and date at job start Tue Mar 31 2020 03:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38102 * 119.92551 * 179.72299 * 11 10 9 13 13 C 1.38304 * 120.07256 * 0.53125 * 12 11 10 14 14 C 1.50699 * 119.93206 * 179.74744 * 13 12 11 15 15 C 1.50701 * 109.46735 * 270.01882 * 14 13 12 16 16 O 1.21287 * 120.00263 * 0.02562 * 15 14 13 17 17 N 1.34784 * 119.99892 * 180.02562 * 15 14 13 18 18 N 1.40097 * 119.99960 * 180.02562 * 17 15 14 19 19 C 1.34774 * 119.99590 * 180.02562 * 18 17 15 20 20 O 1.21279 * 120.00518 * 359.97438 * 19 18 17 21 21 C 1.50705 * 119.99829 * 179.97438 * 19 18 17 22 22 O 1.42893 * 109.47412 * 179.97438 * 21 19 18 23 23 C 1.38305 * 120.13385 * 359.76794 * 13 12 11 24 24 C 1.38101 * 120.07071 * 359.95556 * 23 13 12 25 25 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 27 27 H 1.07997 * 119.96688 * 180.27743 * 12 11 10 28 28 H 1.08986 * 109.47504 * 30.02088 * 14 13 12 29 29 H 1.09005 * 109.46821 * 150.02396 * 14 13 12 30 30 H 0.97005 * 119.99650 * 359.97438 * 17 15 14 31 31 H 0.96998 * 120.00010 * 359.97438 * 18 17 15 32 32 H 1.09003 * 109.47040 * 299.99701 * 21 19 18 33 33 H 1.09004 * 109.46883 * 59.99388 * 21 19 18 34 34 H 0.96699 * 114.00817 * 179.97438 * 22 21 19 35 35 H 1.07999 * 119.96326 * 179.97438 * 23 13 12 36 36 H 1.07997 * 120.03156 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3397 13 6 5.2292 -4.8615 0.3269 14 6 5.9132 -6.1990 0.4463 15 6 6.2643 -6.7081 -0.9280 16 8 5.9869 -6.0494 -1.9079 17 7 6.8867 -7.8954 -1.0682 18 7 7.2136 -8.3684 -2.3457 19 6 7.8355 -9.5558 -2.4858 20 8 8.1125 -10.2147 -1.5060 21 6 8.1866 -10.0650 -3.8601 22 8 8.8347 -11.3335 -3.7470 23 6 3.8531 -4.7987 0.2042 24 6 3.2232 -3.5745 0.0950 25 1 -0.4849 0.8401 0.0004 26 1 5.9419 -1.5655 0.2316 27 1 7.0534 -3.7517 0.4353 28 1 6.8228 -6.0905 1.0369 29 1 5.2443 -6.9068 0.9360 30 1 7.1090 -8.4220 -0.2844 31 1 6.9917 -7.8416 -3.1294 32 1 7.2770 -10.1728 -4.4510 33 1 8.8561 -9.3576 -4.3495 34 1 9.0894 -11.7222 -4.5950 35 1 3.2703 -5.7080 0.1940 36 1 2.1486 -3.5262 -0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753442161.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:53 Heat of formation + Delta-G solvation = -113.678717 kcal Electronic energy + Delta-G solvation = -22013.663326 eV Core-core repulsion = 18271.174308 eV Total energy + Delta-G solvation = -3742.489018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.53823 -40.88551 -40.11873 -38.35273 -37.42577 -36.32718 -34.52495 -33.52838 -32.27810 -31.79129 -28.98718 -27.91128 -26.61721 -23.70904 -22.87923 -22.53147 -21.39670 -19.81832 -19.28778 -19.07394 -18.82505 -17.95728 -17.10593 -16.89669 -16.73309 -16.44680 -16.07292 -15.73740 -15.71151 -15.53767 -15.24157 -14.85909 -14.66936 -14.34217 -14.19447 -14.06157 -13.41928 -13.05422 -12.95000 -12.53027 -12.48137 -12.40752 -12.30589 -11.93116 -11.38283 -11.27201 -11.16527 -11.05543 -10.87935 -9.77849 -9.48139 -8.99591 -8.50183 -6.22677 0.47256 0.59929 0.87492 1.21208 1.31080 1.35886 1.51535 1.67642 2.27987 2.69574 2.86774 3.06681 3.17739 3.56139 3.73598 3.80284 4.04114 4.10320 4.18387 4.29612 4.35068 4.45657 4.58362 4.69036 4.81883 4.98995 5.26008 5.37056 5.54511 5.56487 5.68513 5.73737 5.80365 5.91895 6.25230 6.45034 6.82189 6.84066 6.87677 7.29464 7.58888 8.61450 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.040662 B = 0.002428 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.435898 B =11528.024609 C =11608.697690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.246 6.246 10 C 0.120 3.880 11 C -0.194 4.194 12 C -0.055 4.055 13 C -0.140 4.140 14 C -0.069 4.069 15 C 0.518 3.482 16 O -0.567 6.567 17 N -0.523 5.523 18 N -0.520 5.520 19 C 0.505 3.495 20 O -0.571 6.571 21 C 0.074 3.926 22 O -0.580 6.580 23 C -0.061 4.061 24 C -0.240 4.240 25 H 0.285 0.715 26 H 0.128 0.872 27 H 0.156 0.844 28 H 0.142 0.858 29 H 0.133 0.867 30 H 0.439 0.561 31 H 0.439 0.561 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.413 0.587 35 H 0.135 0.865 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.419 -18.932 -5.440 26.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.475 4.475 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.071 3.929 11 C -0.214 4.214 12 C -0.073 4.073 13 C -0.141 4.141 14 C -0.109 4.109 15 C 0.306 3.694 16 O -0.443 6.443 17 N -0.273 5.273 18 N -0.269 5.269 19 C 0.292 3.708 20 O -0.448 6.448 21 C -0.007 4.007 22 O -0.390 6.390 23 C -0.079 4.079 24 C -0.259 4.259 25 H 0.094 0.906 26 H 0.146 0.854 27 H 0.173 0.827 28 H 0.160 0.840 29 H 0.151 0.849 30 H 0.282 0.718 31 H 0.282 0.718 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.265 0.735 35 H 0.153 0.847 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 18.232 -18.511 -4.857 26.432 hybrid contribution -0.605 0.691 -0.713 1.163 sum 17.627 -17.820 -5.570 25.676 Atomic orbital electron populations 1.69733 1.06886 1.29584 1.50227 1.25307 0.95929 1.02214 0.95568 0.85195 0.78805 0.77335 0.79238 1.19197 1.19116 1.18629 1.20711 0.78145 0.96105 1.52567 0.90230 1.83508 1.21217 1.27545 1.83099 1.19716 0.93309 0.85066 0.94836 1.20509 0.90530 0.99915 1.10398 1.20962 1.00311 0.90161 0.95884 1.19189 0.92684 0.94601 1.07610 1.20481 1.04437 0.94166 0.91846 1.21539 0.76050 0.78628 0.93198 1.90780 1.54356 1.57418 1.41744 1.45098 1.61218 1.21162 0.99858 1.44869 1.60548 1.20921 1.00591 1.21502 0.76728 0.79075 0.93452 1.90734 1.54676 1.57446 1.41896 1.21803 1.00911 0.87795 0.90230 1.86485 1.80411 1.34136 1.37969 1.20929 0.94846 0.96131 0.96019 1.21249 1.00133 0.93343 1.11154 0.90578 0.85432 0.82692 0.84014 0.84869 0.71780 0.71775 0.86731 0.86589 0.73458 0.84744 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.83 13.96 21.61 0.30 -55.53 16 2 C 0.01 0.47 5.49 84.83 0.47 0.94 16 3 Si 0.97 46.06 28.62 68.60 1.96 48.02 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.40 -23.96 9.95 67.92 0.68 -23.29 16 8 H 0.08 5.01 5.44 -2.91 -0.02 5.00 16 9 O -0.25 -13.67 8.59 -22.72 -0.20 -13.86 16 10 C 0.12 5.72 6.65 22.58 0.15 5.87 16 11 C -0.19 -7.51 9.99 22.39 0.22 -7.29 16 12 C -0.06 -1.65 9.69 22.25 0.22 -1.44 16 13 C -0.14 -3.93 4.38 -19.83 -0.09 -4.02 16 14 C -0.07 -1.15 5.83 29.10 0.17 -0.98 16 15 C 0.52 10.78 7.94 87.66 0.70 11.47 16 16 O -0.57 -17.06 15.87 -3.05 -0.05 -17.11 16 17 N -0.52 -8.81 6.26 -173.52 -1.09 -9.89 16 18 N -0.52 -8.12 6.26 -173.53 -1.09 -9.21 16 19 C 0.50 8.51 8.02 87.66 0.70 9.21 16 20 O -0.57 -14.92 16.34 16.01 0.26 -14.66 16 21 C 0.07 0.55 7.53 71.24 0.54 1.09 16 22 O -0.58 -6.85 13.19 -129.94 -1.71 -8.56 16 23 C -0.06 -2.10 9.69 22.25 0.22 -1.89 16 24 C -0.24 -10.75 9.17 22.39 0.21 -10.54 16 25 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 26 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 27 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 28 H 0.14 1.36 8.08 -2.39 -0.02 1.34 16 29 H 0.13 1.52 8.08 -2.38 -0.02 1.50 16 30 H 0.44 6.10 8.00 -213.32 -1.71 4.40 16 31 H 0.44 5.74 8.00 -213.32 -1.71 4.03 16 32 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.41 -0.01 9.12 -74.06 -0.68 -0.69 16 35 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 36 H 0.11 5.24 5.64 -2.91 -0.02 5.23 16 Total: -1.00 -87.75 325.86 -0.35 -88.10 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -2.92 Total: 13.56 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 4.17 Total: -20.87 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -1.87 Total: -74.63 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -1.70 Total: -54.19 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.96 Total: 48.02 kcal Total: -87.75 -0.35 -88.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753442161.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.574 kcal (2) G-P(sol) polarization free energy of solvation -87.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds