Wall clock time and date at job start Tue Mar 31 2020 04:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47146 * 2 1 4 4 N 1.41590 * 114.00175 * 179.97438 * 3 2 1 5 5 C 1.34783 * 120.00209 * 180.02562 * 4 3 2 6 6 O 1.21358 * 119.99776 * 0.02562 * 5 4 3 7 7 C 1.49348 * 120.00411 * 180.02562 * 5 4 3 8 8 O 1.21375 * 119.99697 * 0.02562 * 7 5 4 9 9 N 1.34774 * 120.00413 * 180.02562 * 7 5 4 10 10 C 1.39719 * 120.00169 * 174.78630 * 9 7 5 11 11 C 1.39016 * 120.04166 * 326.27737 * 10 9 7 12 12 C 1.38143 * 120.06310 * 180.02562 * 11 10 9 13 13 C 1.38181 * 120.14336 * 359.72738 * 12 11 10 14 14 C 1.38924 * 120.07850 * 0.55254 * 13 12 11 15 15 O 1.35749 * 120.02578 * 179.72208 * 14 13 12 16 16 C 1.34838 * 116.99655 * 173.82572 * 15 14 13 17 17 H 1.07995 * 120.00063 * 354.59576 * 16 15 14 18 18 C 1.38650 * 119.99698 * 174.59818 * 16 15 14 19 19 N 1.31552 * 120.00541 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99878 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46879 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47239 * 119.99754 * 20 18 16 23 23 H 1.48495 * 109.47351 * 240.00270 * 20 18 16 24 24 C 1.38752 * 119.93855 * 359.44912 * 14 13 12 25 25 H 1.08997 * 109.47210 * 60.00143 * 1 2 3 26 26 H 1.09004 * 109.46862 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46901 * 299.99215 * 1 2 3 28 28 H 1.09006 * 109.47115 * 240.00092 * 2 1 3 29 29 H 1.08993 * 109.47469 * 120.00282 * 2 1 3 30 30 H 0.97000 * 120.00248 * 0.02562 * 4 3 2 31 31 H 0.97005 * 119.99400 * 354.78723 * 9 7 5 32 32 H 1.08000 * 119.97354 * 0.02562 * 11 10 9 33 33 H 1.08001 * 119.92981 * 180.02562 * 12 11 10 34 34 H 1.07994 * 119.96243 * 180.27118 * 13 12 11 35 35 H 0.97003 * 120.00621 * 180.02562 * 19 18 16 36 36 H 1.08002 * 120.07301 * 180.25820 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 7 3.4178 1.4591 0.0006 5 6 3.9975 2.6759 0.0012 6 8 3.3096 3.6757 0.0017 7 6 5.4863 2.7940 0.0012 8 8 6.1743 1.7940 0.0002 9 7 6.0659 4.0107 0.0023 10 6 7.4542 4.1231 0.1123 11 6 8.1682 3.2076 0.8770 12 6 9.5408 3.3186 0.9865 13 6 10.2091 4.3359 0.3322 14 6 9.5009 5.2575 -0.4288 15 8 10.1578 6.2597 -1.0665 16 6 9.4305 7.0418 -1.8896 17 1 8.3953 6.8044 -2.0850 18 6 10.0118 8.1508 -2.4851 19 7 11.2728 8.4403 -2.2467 20 14 9.0045 9.2339 -3.6260 21 1 7.6240 8.6961 -3.7281 22 1 8.9590 10.6159 -3.0844 23 1 9.6295 9.2504 -4.9728 24 6 8.1221 5.1491 -0.5411 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.9677 0.6600 0.0006 31 1 5.5191 4.8084 -0.0733 32 1 7.6493 2.4088 1.3860 33 1 10.0934 2.6060 1.5808 34 1 11.2826 4.4173 0.4163 35 1 11.6794 9.2164 -2.6630 36 1 7.5699 5.8619 -1.1356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785359190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:53 Heat of formation + Delta-G solvation = -53.693308 kcal Electronic energy + Delta-G solvation = -22343.545892 eV Core-core repulsion = 18603.658036 eV Total energy + Delta-G solvation = -3739.887856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.93292 -39.36885 -38.54792 -37.68975 -36.60463 -34.55842 -33.24286 -32.28416 -30.75072 -29.59379 -28.75145 -25.55515 -24.95412 -23.53225 -21.97257 -21.81774 -20.23592 -19.21127 -18.34885 -18.02084 -17.17660 -16.61221 -16.55259 -15.74632 -15.55672 -15.11247 -14.87469 -14.45412 -14.19594 -13.99783 -13.87057 -13.59914 -13.22148 -13.07245 -12.93239 -12.45403 -12.16028 -11.99067 -11.79406 -11.64716 -11.29446 -11.12166 -11.04754 -10.80369 -10.44465 -10.06173 -9.69805 -9.52057 -9.37837 -8.85578 -7.88046 -7.26976 -6.48950 -4.08841 1.07215 1.17082 2.07491 2.30472 3.04266 3.07598 3.12963 3.13180 3.18244 3.93761 4.02770 4.20401 4.44466 4.50101 4.53899 4.75430 5.06143 5.17057 5.19895 5.31171 5.56653 5.57746 5.85665 5.90087 6.08873 6.13274 6.25062 6.45299 6.53862 6.81014 6.83074 7.04283 7.19018 7.33576 7.39274 7.61067 7.69763 7.89562 7.95581 8.96528 9.64458 10.68720 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.020262 B = 0.003153 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.587176 B = 8877.121840 C =10094.692356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.024 3.976 3 O -0.139 6.139 4 N -0.572 5.572 5 C 0.522 3.478 6 O -0.498 6.498 7 C 0.520 3.480 8 O -0.499 6.499 9 N -0.629 5.629 10 C 0.172 3.828 11 C -0.204 4.204 12 C -0.062 4.062 13 C -0.194 4.194 14 C 0.167 3.833 15 O -0.173 6.173 16 C -0.393 4.393 17 H 0.092 0.908 18 C 0.041 3.959 19 N -0.860 5.860 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.276 1.276 24 C -0.248 4.248 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.421 0.579 31 H 0.421 0.579 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.270 0.730 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.821 -14.846 4.624 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.053 4.053 3 O -0.143 6.143 4 N -0.276 5.276 5 C 0.303 3.697 6 O -0.370 6.370 7 C 0.300 3.700 8 O -0.374 6.374 9 N -0.276 5.276 10 C 0.080 3.920 11 C -0.225 4.225 12 C -0.081 4.081 13 C -0.213 4.213 14 C 0.113 3.887 15 O -0.076 6.076 16 C -0.469 4.469 17 H 0.109 0.891 18 C -0.164 4.164 19 N -0.495 5.495 20 Si 0.765 3.235 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.269 4.269 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.263 0.737 31 H 0.259 0.741 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.603 -14.414 4.555 21.725 hybrid contribution -0.750 0.255 -0.654 1.027 sum -16.353 -14.159 3.902 21.980 Atomic orbital electron populations 1.21707 0.91455 1.03286 1.03948 1.23105 0.96730 0.83646 1.01834 1.90609 1.00145 1.26286 1.97244 1.47028 0.95766 1.09131 1.75634 1.20110 0.88575 0.82614 0.78406 1.90810 1.63851 1.35666 1.46692 1.19471 0.86931 0.84671 0.78961 1.90807 1.63821 1.35917 1.46823 1.43048 1.07061 1.08328 1.69115 1.17366 0.80089 0.97329 0.97237 1.20522 0.94380 1.02470 1.05114 1.20521 0.93347 0.96548 0.97711 1.20307 0.99868 0.97151 1.03993 1.19071 0.89700 0.89128 0.90817 1.84026 1.35918 1.36321 1.51327 1.21345 0.96191 1.06979 1.22406 0.89060 1.25289 0.96319 0.96681 0.98121 1.70039 1.11171 1.26699 1.41554 0.85656 0.79231 0.79419 0.79193 1.19045 1.20085 1.20112 1.20846 0.94731 1.03297 1.08062 0.91191 0.89886 0.91217 0.91618 0.91640 0.73685 0.74140 0.86260 0.86343 0.86146 0.91981 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.35 16 2 C 0.02 0.16 6.95 37.16 0.26 0.41 16 3 O -0.14 -1.53 11.11 -29.65 -0.33 -1.86 16 4 N -0.57 -6.37 6.38 30.88 0.20 -6.17 16 5 C 0.52 7.19 8.03 -11.63 -0.09 7.10 16 6 O -0.50 -8.15 16.89 -12.69 -0.21 -8.36 16 7 C 0.52 7.65 7.62 -11.63 -0.09 7.56 16 8 O -0.50 -7.95 14.18 5.47 0.08 -7.87 16 9 N -0.63 -9.83 5.32 -10.32 -0.05 -9.89 16 10 C 0.17 3.19 6.27 -83.78 -0.52 2.67 16 11 C -0.20 -3.67 8.65 -39.33 -0.34 -4.01 16 12 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 13 C -0.19 -3.96 9.99 -39.35 -0.39 -4.36 16 14 C 0.17 3.93 6.64 -39.14 -0.26 3.67 16 15 O -0.17 -4.80 9.76 0.03 0.00 -4.80 16 16 C -0.39 -10.73 9.44 30.88 0.29 -10.44 16 17 H 0.09 2.31 5.30 -52.49 -0.28 2.03 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 20 Si 0.94 20.27 29.55 -169.99 -5.02 15.24 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 C -0.25 -5.24 9.05 -39.19 -0.35 -5.59 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.42 3.61 8.01 -40.82 -0.33 3.28 16 31 H 0.42 5.89 8.30 -40.82 -0.34 5.56 16 32 H 0.12 2.01 6.44 -52.49 -0.34 1.68 16 33 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 35 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.13 2.79 5.71 -52.49 -0.30 2.49 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -33.08 325.51 -4.98 -38.05 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.68 Total: 8.63 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.62 Total: -3.83 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.90 Total: -40.11 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.47 Total: -22.90 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.08 -4.98 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785359190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.640 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds