Wall clock time and date at job start Tue Mar 31 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00551 * 2 1 4 4 H 1.48501 * 109.46797 * 270.00087 * 3 2 1 5 5 H 1.48498 * 109.46678 * 29.99650 * 3 2 1 6 6 H 1.48491 * 109.47437 * 149.99727 * 3 2 1 7 7 C 1.38954 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00355 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99403 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99874 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99857 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00095 * 180.02562 * 10 9 7 13 13 O 1.42906 * 109.47305 * 179.97438 * 12 10 9 14 14 C 1.34902 * 117.00154 * 179.97438 * 13 12 10 15 15 O 1.21629 * 119.99853 * 0.02562 * 14 13 12 16 16 C 1.46233 * 120.00113 * 180.27360 * 14 13 12 17 17 C 1.34904 * 120.00282 * 172.94972 * 16 14 13 18 18 C 1.47180 * 119.99979 * 349.09244 * 17 16 14 19 19 C 1.39862 * 120.57398 * 136.56754 * 18 17 16 20 20 N 1.31619 * 120.57447 * 180.02562 * 19 18 17 21 21 C 1.31947 * 121.93804 * 359.97438 * 20 19 18 22 22 C 1.38587 * 121.10939 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.36024 * 180.02562 * 22 21 20 24 24 C 1.38539 * 119.28074 * 359.77237 * 22 21 20 25 25 H 0.97004 * 119.99793 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00305 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47832 * 59.99781 * 12 10 9 28 28 H 1.09004 * 109.47186 * 299.99311 * 12 10 9 29 29 H 1.08001 * 119.99926 * 352.94931 * 16 14 13 30 30 H 1.08007 * 120.00316 * 169.09606 * 17 16 14 31 31 H 1.07993 * 119.71152 * 359.97287 * 19 18 17 32 32 H 1.08005 * 119.44755 * 180.02562 * 21 20 19 33 33 H 1.07999 * 120.87887 * 180.25741 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0021 12 6 1.2435 -4.8629 0.0010 13 8 2.1721 -5.9492 0.0017 14 6 1.6564 -7.1958 0.0019 15 8 0.4506 -7.3550 0.0009 16 6 2.5471 -8.3555 0.0086 17 6 2.0377 -9.5964 0.1522 18 6 0.6290 -9.7734 0.5401 19 6 -0.1694 -10.7292 -0.0962 20 7 -1.4293 -10.8871 0.2504 21 6 -1.9881 -10.1617 1.2004 22 6 -1.2660 -9.1940 1.8808 23 9 -1.8531 -8.4602 2.8513 24 6 0.0660 -8.9909 1.5584 25 1 -0.4850 0.8401 -0.0004 26 1 0.3532 -2.3906 0.0005 27 1 0.6178 -4.9209 -0.8896 28 1 0.6159 -4.9205 0.8904 29 1 3.6127 -8.2186 -0.1013 30 1 2.6636 -10.4601 -0.0175 31 1 0.2512 -11.3424 -0.8793 32 1 -3.0254 -10.3253 1.4527 33 1 0.6540 -8.2467 2.0749 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785849918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:42 Heat of formation + Delta-G solvation = -99.378033 kcal Electronic energy + Delta-G solvation = -22192.565130 eV Core-core repulsion = 18327.235931 eV Total energy + Delta-G solvation = -3865.329199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.085 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -49.08105 -40.86149 -39.90917 -38.22052 -36.56775 -34.62389 -34.02425 -31.90383 -31.40754 -30.58868 -28.49258 -25.48714 -24.52342 -23.72606 -22.65793 -19.90824 -19.61076 -18.34226 -18.09706 -17.44513 -17.39181 -16.97349 -16.34313 -16.11099 -15.95378 -15.52576 -14.68229 -14.38266 -14.18093 -14.07088 -13.92787 -13.66784 -13.40358 -13.28419 -12.85776 -12.47161 -12.32477 -11.98217 -11.64282 -11.16528 -11.13816 -10.47674 -10.45691 -10.37097 -10.31224 -9.87159 -9.62676 -9.33702 -8.85233 -8.54836 -8.10609 -6.51962 -3.94183 0.09141 0.82835 1.31463 2.71118 2.80134 3.11790 3.22222 3.28378 3.41054 3.70944 3.79349 4.08979 4.13923 4.27109 4.47173 4.52729 4.60481 4.87081 5.02031 5.12448 5.12728 5.31755 5.47135 5.56661 5.57641 5.65076 5.72124 5.91307 6.03381 6.36201 6.53251 7.45782 7.54931 7.74893 7.92883 8.46065 9.04839 9.36910 9.86635 10.65198 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.003088 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.824354 B = 9065.224542 C = 9825.236796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.059 3.941 13 O -0.314 6.314 14 C 0.481 3.519 15 O -0.507 6.507 16 C -0.165 4.165 17 C -0.022 4.022 18 C -0.098 4.098 19 C 0.107 3.893 20 N -0.465 5.465 21 C 0.083 3.917 22 C 0.043 3.957 23 F -0.130 7.130 24 C -0.039 4.039 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -20.825 1.677 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.019 4.019 13 O -0.228 6.228 14 C 0.327 3.673 15 O -0.398 6.398 16 C -0.183 4.183 17 C -0.041 4.041 18 C -0.101 4.101 19 C -0.050 4.050 20 N -0.173 5.173 21 C -0.076 4.076 22 C 0.021 3.979 23 F -0.109 7.109 24 C -0.065 4.065 25 H 0.084 0.916 26 H 0.228 0.772 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.173 0.827 30 H 0.174 0.826 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.223 -21.247 1.288 21.321 hybrid contribution -0.011 1.871 0.541 1.948 sum -1.234 -19.375 1.829 19.501 Atomic orbital electron populations 1.69615 1.06021 1.28529 1.49522 1.25322 0.95687 0.99896 0.96824 0.85793 0.79236 0.80378 0.78519 1.20234 1.20785 1.19251 1.19734 0.93487 0.81751 1.48290 0.87591 1.41710 1.09379 1.04104 1.63672 1.19301 0.88306 0.84048 0.86095 1.90562 1.13382 1.86764 1.55370 1.22382 0.91181 0.84958 1.03332 1.86248 1.40052 1.13987 1.82506 1.21564 0.87705 0.84438 0.73544 1.90930 1.16358 1.86549 1.45938 1.22476 1.00708 0.89543 1.05622 1.22357 0.92537 0.97038 0.92203 1.19814 0.95339 0.97595 0.97303 1.22958 0.89103 0.95077 0.97827 1.67635 1.12172 1.24506 1.12947 1.22917 1.00719 0.91698 0.92242 1.18576 0.92537 0.95274 0.91500 1.91538 1.83835 1.75496 1.59987 1.21654 0.93598 0.95726 0.95524 0.91590 0.77154 0.89769 0.89852 0.82696 0.82634 0.81829 0.81720 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.55 -13.98 5.29 -10.96 -0.06 -14.04 16 10 C 0.44 10.55 7.86 -10.99 -0.09 10.46 16 11 O -0.58 -15.97 16.08 -14.37 -0.23 -16.21 16 12 C 0.06 1.13 5.85 36.00 0.21 1.34 16 13 O -0.31 -5.66 9.65 -47.80 -0.46 -6.12 16 14 C 0.48 7.02 6.95 33.94 0.24 7.25 16 15 O -0.51 -8.07 11.91 -19.36 -0.23 -8.30 16 16 C -0.16 -1.62 10.06 -37.56 -0.38 -1.99 16 17 C -0.02 -0.17 9.84 -37.14 -0.37 -0.53 16 18 C -0.10 -0.98 4.54 -104.92 -0.48 -1.46 16 19 C 0.11 1.02 10.96 -17.04 -0.19 0.83 16 20 N -0.47 -5.20 10.34 -12.78 -0.13 -5.33 16 21 C 0.08 0.90 11.16 -17.37 -0.19 0.70 16 22 C 0.04 0.52 7.33 -39.34 -0.29 0.23 16 23 F -0.13 -1.68 17.28 2.25 0.04 -1.64 16 24 C -0.04 -0.46 6.71 -38.73 -0.26 -0.72 16 25 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 27 H 0.08 1.47 8.13 -51.93 -0.42 1.05 16 28 H 0.08 1.45 8.13 -51.93 -0.42 1.02 16 29 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.16 0.52 8.06 -52.48 -0.42 0.10 16 31 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.14 1.67 7.10 -52.49 -0.37 1.30 16 LS Contribution 309.89 15.07 4.67 4.67 Total: -1.00 -33.65 309.89 -5.47 -39.13 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -2.74 Total: 7.40 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -2.03 Total: 8.16 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.53 Total: -42.73 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.92 Total: -30.63 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.65 -5.47 -39.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785849918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.250 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds