Wall clock time and date at job start Tue Mar 31 2020 03:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00551 * 2 1 4 4 H 1.48501 * 109.46797 * 270.00087 * 3 2 1 5 5 H 1.48498 * 109.46678 * 29.99650 * 3 2 1 6 6 H 1.48491 * 109.47437 * 149.99727 * 3 2 1 7 7 C 1.38954 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00355 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99403 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99874 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99857 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00095 * 180.02562 * 10 9 7 13 13 O 1.42906 * 109.47305 * 179.97438 * 12 10 9 14 14 C 1.34902 * 117.00154 * 179.97438 * 13 12 10 15 15 O 1.21629 * 119.99853 * 0.02562 * 14 13 12 16 16 C 1.46233 * 120.00113 * 180.27360 * 14 13 12 17 17 C 1.34904 * 120.00282 * 172.94972 * 16 14 13 18 18 C 1.47180 * 119.99979 * 349.09244 * 17 16 14 19 19 C 1.39862 * 120.57398 * 136.56754 * 18 17 16 20 20 N 1.31619 * 120.57447 * 180.02562 * 19 18 17 21 21 C 1.31947 * 121.93804 * 359.97438 * 20 19 18 22 22 C 1.38587 * 121.10939 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.36024 * 180.02562 * 22 21 20 24 24 C 1.38539 * 119.28074 * 359.77237 * 22 21 20 25 25 H 0.97004 * 119.99793 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00305 * 359.97438 * 9 7 2 27 27 H 1.08998 * 109.47832 * 59.99781 * 12 10 9 28 28 H 1.09004 * 109.47186 * 299.99311 * 12 10 9 29 29 H 1.08001 * 119.99926 * 352.94931 * 16 14 13 30 30 H 1.08007 * 120.00316 * 169.09606 * 17 16 14 31 31 H 1.07993 * 119.71152 * 359.97287 * 19 18 17 32 32 H 1.08005 * 119.44755 * 180.02562 * 21 20 19 33 33 H 1.07999 * 120.87887 * 180.25741 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0021 12 6 1.2435 -4.8629 0.0010 13 8 2.1721 -5.9492 0.0017 14 6 1.6564 -7.1958 0.0019 15 8 0.4506 -7.3550 0.0009 16 6 2.5471 -8.3555 0.0086 17 6 2.0377 -9.5964 0.1522 18 6 0.6290 -9.7734 0.5401 19 6 -0.1694 -10.7292 -0.0962 20 7 -1.4293 -10.8871 0.2504 21 6 -1.9881 -10.1617 1.2004 22 6 -1.2660 -9.1940 1.8808 23 9 -1.8531 -8.4602 2.8513 24 6 0.0660 -8.9909 1.5584 25 1 -0.4850 0.8401 -0.0004 26 1 0.3532 -2.3906 0.0005 27 1 0.6178 -4.9209 -0.8896 28 1 0.6159 -4.9205 0.8904 29 1 3.6127 -8.2186 -0.1013 30 1 2.6636 -10.4601 -0.0175 31 1 0.2512 -11.3424 -0.8793 32 1 -3.0254 -10.3253 1.4527 33 1 0.6540 -8.2467 2.0749 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785849918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:40 Heat of formation + Delta-G solvation = -121.703233 kcal Electronic energy + Delta-G solvation = -22193.533224 eV Core-core repulsion = 18327.235931 eV Total energy + Delta-G solvation = -3866.297292 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.085 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -50.02533 -41.95029 -40.90967 -40.02248 -37.86598 -36.06938 -35.46839 -33.45201 -32.73452 -31.45480 -30.02490 -26.92777 -25.89840 -24.60803 -23.64178 -21.49431 -20.87819 -20.11540 -19.32103 -18.40579 -18.33688 -17.97165 -17.71719 -17.60706 -17.01280 -16.84348 -16.39312 -15.79864 -15.71030 -15.24667 -14.93335 -14.76523 -14.38441 -14.27738 -14.10906 -13.83293 -13.58827 -13.50659 -13.14616 -12.95657 -12.50498 -12.14043 -12.07941 -11.82745 -11.60180 -11.27619 -10.69721 -10.54878 -10.24159 -10.15129 -9.63037 -8.55078 -6.06218 -0.70676 -0.01439 0.49436 1.33954 1.39015 1.48477 1.59032 1.80024 1.86115 2.28814 2.61469 2.98824 3.05202 3.10298 3.37446 3.55503 3.65452 3.73590 3.80343 4.00804 4.09837 4.13172 4.17202 4.51915 4.57591 4.77093 4.83604 4.98244 5.19139 5.33867 5.38464 5.56311 5.85844 6.42219 6.63619 6.75334 6.99674 7.36170 7.89320 8.61976 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.003088 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.824354 B = 9065.224542 C = 9825.236796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.085 0.915 9 N -0.558 5.558 10 C 0.436 3.564 11 O -0.617 6.617 12 C 0.074 3.926 13 O -0.337 6.337 14 C 0.477 3.523 15 O -0.527 6.527 16 C -0.189 4.189 17 C 0.019 3.981 18 C -0.110 4.110 19 C 0.114 3.886 20 N -0.481 5.481 21 C 0.082 3.918 22 C 0.019 3.981 23 F -0.142 7.142 24 C -0.053 4.053 25 H 0.281 0.719 26 H 0.399 0.601 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.178 0.822 30 H 0.212 0.788 31 H 0.203 0.797 32 H 0.184 0.816 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 -22.377 0.980 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.222 3.778 11 O -0.504 6.504 12 C -0.004 4.004 13 O -0.252 6.252 14 C 0.325 3.675 15 O -0.419 6.419 16 C -0.208 4.208 17 C 0.001 3.999 18 C -0.112 4.112 19 C -0.043 4.043 20 N -0.189 5.189 21 C -0.076 4.076 22 C -0.003 4.003 23 F -0.121 7.121 24 C -0.080 4.080 25 H 0.091 0.909 26 H 0.233 0.767 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.195 0.805 30 H 0.228 0.772 31 H 0.219 0.781 32 H 0.201 0.799 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.834 -22.820 0.593 22.843 hybrid contribution -0.203 2.205 0.759 2.341 sum -1.037 -20.615 1.352 20.685 Atomic orbital electron populations 1.69677 1.07034 1.29789 1.49073 1.26160 0.96585 1.02682 0.95542 0.84837 0.77909 0.76197 0.78864 1.19353 1.19411 1.19424 1.19747 0.92986 0.83366 1.50786 0.89663 1.41763 1.09522 1.04280 1.63929 1.20115 0.88085 0.85384 0.84197 1.90521 1.15360 1.87688 1.56818 1.22034 0.90506 0.83157 1.04667 1.86250 1.40430 1.15081 1.83448 1.22490 0.88370 0.84070 0.72524 1.90926 1.17376 1.86431 1.47171 1.22593 1.01096 0.88121 1.08960 1.22896 0.91320 0.97745 0.87974 1.20151 0.96877 0.97298 0.96847 1.23597 0.88435 0.94537 0.97699 1.67724 1.13177 1.24830 1.13159 1.23213 1.01538 0.91026 0.91805 1.18822 0.93072 0.96229 0.92152 1.91498 1.84076 1.75944 1.60580 1.21772 0.93643 0.96034 0.96525 0.90927 0.76672 0.88292 0.88438 0.80468 0.77177 0.78070 0.79904 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.10 13.05 21.66 0.28 -48.81 16 2 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 3 Si 1.00 42.16 29.55 68.60 2.03 44.19 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.34 -19.24 9.68 84.04 0.81 -18.43 16 8 H 0.09 5.10 7.16 -2.91 -0.02 5.07 16 9 N -0.56 -29.05 5.29 -306.97 -1.62 -30.67 16 10 C 0.44 21.56 7.86 87.65 0.69 22.25 16 11 O -0.62 -35.28 16.08 15.95 0.26 -35.03 16 12 C 0.07 2.84 5.85 71.23 0.42 3.26 16 13 O -0.34 -12.19 9.65 -51.70 -0.50 -12.69 16 14 C 0.48 13.56 6.95 69.90 0.49 14.04 16 15 O -0.53 -16.54 11.91 19.42 0.23 -16.31 16 16 C -0.19 -3.25 10.06 23.58 0.24 -3.01 16 17 C 0.02 0.21 9.84 23.85 0.23 0.44 16 18 C -0.11 -1.91 4.54 -20.06 -0.09 -2.00 16 19 C 0.11 1.80 10.96 85.12 0.93 2.74 16 20 N -0.48 -9.77 10.34 -194.33 -2.01 -11.78 16 21 C 0.08 1.71 11.16 84.76 0.95 2.65 16 22 C 0.02 0.45 7.33 22.42 0.16 0.62 16 23 F -0.14 -3.79 17.28 44.97 0.78 -3.02 16 24 C -0.05 -1.24 6.71 22.82 0.15 -1.08 16 25 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 26 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 27 H 0.10 3.47 8.13 -2.39 -0.02 3.45 16 28 H 0.10 3.42 8.13 -2.38 -0.02 3.40 16 29 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.21 0.04 8.06 -2.91 -0.02 0.02 16 31 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.13 3.15 7.10 -2.91 -0.02 3.13 16 Total: -1.00 -75.08 309.89 5.34 -69.74 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.44 Total: 22.91 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 5.45 Total: 21.47 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -3.35 Total: -91.26 kcal Atomic # 8 Polarization: -64.02 SS G_CDS: -0.01 Total: -64.03 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.78 Total: -3.02 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -75.08 5.34 -69.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785849918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.964 kcal (2) G-P(sol) polarization free energy of solvation -75.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds