Wall clock time and date at job start Tue Mar 31 2020 04:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00594 * 2 1 4 4 C 1.50706 * 109.47335 * 275.57349 * 3 2 1 5 5 H 1.08003 * 119.99857 * 4.70729 * 4 3 2 6 6 C 1.37870 * 120.00451 * 184.71096 * 4 3 2 7 7 N 1.31521 * 119.99984 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00523 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46738 * 59.99594 * 8 6 4 10 10 H 1.48494 * 109.47257 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46726 * 300.00191 * 8 6 4 12 12 S 1.65608 * 120.00079 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40372 * 159.56671 * 12 2 1 14 14 O 1.42100 * 106.39926 * 26.64543 * 12 2 1 15 15 N 1.65603 * 107.21579 * 273.10661 * 12 2 1 16 16 C 1.46506 * 119.99891 * 62.77155 * 15 12 2 17 17 C 1.53001 * 109.46680 * 164.44117 * 16 15 12 18 18 O 1.42970 * 109.47111 * 299.99869 * 17 16 15 19 19 C 1.43090 * 113.76802 * 178.80030 * 18 17 16 20 20 C 1.53261 * 108.94105 * 302.02925 * 19 18 17 21 21 C 1.53258 * 108.84745 * 54.52734 * 20 19 18 22 22 O 1.42959 * 109.47355 * 60.00093 * 17 16 15 23 23 H 1.09006 * 109.46904 * 269.99942 * 1 2 3 24 24 H 1.09003 * 109.46689 * 29.99887 * 1 2 3 25 25 H 1.08997 * 109.47147 * 150.00175 * 1 2 3 26 26 H 1.09006 * 109.47105 * 35.56543 * 3 2 1 27 27 H 1.08999 * 109.47968 * 155.56687 * 3 2 1 28 28 H 0.96996 * 120.00373 * 180.02562 * 7 6 4 29 29 H 0.96999 * 120.00163 * 242.77017 * 15 12 2 30 30 H 1.09000 * 109.46961 * 44.44520 * 16 15 12 31 31 H 1.09000 * 109.46752 * 284.43888 * 16 15 12 32 32 H 1.08999 * 109.46656 * 180.02562 * 17 16 15 33 33 H 1.08998 * 109.56267 * 61.86624 * 19 18 17 34 34 H 1.09003 * 109.56054 * 182.08539 * 19 18 17 35 35 H 1.09005 * 109.57550 * 174.33913 * 20 19 18 36 36 H 1.09005 * 109.57498 * 294.58505 * 20 19 18 37 37 H 1.08993 * 109.56304 * 65.31314 * 21 20 19 38 38 H 1.09002 * 109.55990 * 185.64222 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3293 1.7727 -1.4141 5 1 1.8447 1.2455 -2.2227 6 6 3.0685 2.9067 -1.6758 7 7 3.6583 3.5490 -0.6912 8 14 3.2324 3.5311 -3.4287 9 1 1.8860 3.8478 -3.9692 10 1 4.0711 4.7564 -3.4413 11 1 3.8697 2.4856 -4.2689 12 16 2.2930 -1.4342 -0.0006 13 8 3.5999 -1.1428 -0.4764 14 8 1.4385 -2.3906 -0.6124 15 7 2.4639 -1.9022 1.5787 16 6 1.2785 -2.1970 2.3876 17 6 1.6966 -2.9619 3.6450 18 8 2.3333 -4.1855 3.2689 19 6 2.7878 -4.9644 4.3799 20 6 3.7638 -4.1240 5.2105 21 6 3.0804 -2.8072 5.5949 22 8 2.6073 -2.1654 4.4066 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6553 2.0013 0.5978 27 1 3.1895 1.1155 0.4250 28 1 4.1780 4.3470 -0.8752 29 1 3.3487 -1.9812 1.9681 30 1 0.5842 -2.8044 1.8069 31 1 0.7932 -1.2641 2.6743 32 1 0.8147 -3.1816 4.2466 33 1 1.9364 -5.2511 4.9972 34 1 3.2925 -5.8594 4.0160 35 1 4.0391 -4.6697 6.1131 36 1 4.6580 -3.9157 4.6229 37 1 2.2402 -3.0122 6.2581 38 1 3.7961 -2.1584 6.0997 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788416134.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:22 Heat of formation + Delta-G solvation = -166.668840 kcal Electronic energy + Delta-G solvation = -22917.114654 eV Core-core repulsion = 19307.771763 eV Total energy + Delta-G solvation = -3609.342891 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.18497 -36.50691 -35.89196 -35.44976 -35.13704 -35.03468 -32.39508 -32.32205 -27.95477 -27.69453 -26.23888 -25.00176 -22.96154 -22.20356 -21.34072 -18.86141 -17.67955 -17.29171 -17.06235 -16.52261 -16.27344 -16.17705 -15.32157 -15.12774 -14.99391 -14.65518 -14.14006 -13.73502 -13.54943 -13.22068 -13.15929 -12.77657 -12.22763 -12.09393 -11.93184 -11.80193 -11.51605 -11.38859 -11.31926 -11.08845 -10.99066 -10.96571 -10.64876 -10.42204 -10.27161 -9.98630 -9.92820 -9.71665 -9.21422 -8.38133 -7.99388 -6.00310 -4.04456 1.34666 3.29749 3.35792 3.37807 3.41267 3.45984 3.66010 4.26880 4.41169 4.43223 4.50068 4.59055 4.70148 4.85968 5.01567 5.07377 5.17329 5.34069 5.34334 5.40632 5.50891 5.55782 5.70767 5.74213 5.98646 6.06137 6.34943 6.60320 6.63901 6.91131 7.23359 7.38139 7.51086 7.71435 7.97155 8.27284 8.97761 9.60529 11.08286 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.027697 B = 0.004191 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.685718 B = 6679.408328 C = 7000.694262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.997 5.997 3 C 0.257 3.743 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.784 3.216 13 O -0.963 6.963 14 O -0.999 6.999 15 N -1.122 6.122 16 C 0.141 3.859 17 C 0.242 3.758 18 O -0.382 6.382 19 C 0.055 3.945 20 C -0.195 4.195 21 C 0.057 3.943 22 O -0.383 6.383 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.418 0.582 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.005 -14.210 15.058 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.839 5.839 3 C 0.135 3.865 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.791 3.209 13 O -0.947 6.947 14 O -0.982 6.982 15 N -0.882 5.882 16 C 0.013 3.987 17 C 0.145 3.855 18 O -0.303 6.303 19 C -0.021 4.021 20 C -0.233 4.233 21 C -0.020 4.020 22 O -0.304 6.304 23 H 0.056 0.944 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.252 0.748 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.697 -14.367 14.011 20.610 hybrid contribution 0.334 0.418 0.103 0.545 sum -4.363 -13.949 14.114 20.317 Atomic orbital electron populations 1.21379 0.80429 1.03529 1.00031 1.57627 1.14153 1.23395 1.88768 1.19055 0.91305 0.78637 0.97506 1.21479 1.31798 1.10290 0.93485 0.92216 1.24931 0.95042 0.96555 0.97433 1.69915 1.33222 1.18927 1.31350 0.86578 0.78084 0.78135 0.84767 1.20209 1.21193 1.20008 1.01879 0.73367 0.72844 0.72774 1.93638 1.38665 1.84556 1.77860 1.93516 1.69086 1.61133 1.74508 1.55956 1.13869 1.85572 1.32843 1.21230 0.88471 0.99119 0.89845 1.23582 0.89130 0.80723 0.92016 1.88225 1.77529 1.32486 1.32015 1.22664 0.96632 0.94303 0.88519 1.22809 1.00768 0.97882 1.01805 1.22660 0.98330 0.94168 0.86813 1.88197 1.63961 1.41902 1.36311 0.94415 0.90410 0.91606 0.95038 0.93877 0.92674 0.74787 0.88683 0.89678 0.91585 0.92927 0.88236 0.89806 0.89690 0.92885 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 10.69 59.85 0.64 2.22 16 2 N -1.00 -21.07 3.23 -123.05 -0.40 -21.46 16 3 C 0.26 6.60 5.10 -5.19 -0.03 6.57 16 4 C -0.53 -15.23 9.38 -34.44 -0.32 -15.55 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 7 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 8 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 12 S 2.78 57.58 6.09 -107.50 -0.65 56.92 16 13 O -0.96 -24.15 16.99 -57.17 -0.97 -25.12 16 14 O -1.00 -21.52 16.34 -57.17 -0.93 -22.46 16 15 N -1.12 -18.29 5.86 -10.61 -0.06 -18.36 16 16 C 0.14 1.82 6.36 -4.04 -0.03 1.80 16 17 C 0.24 2.75 3.45 37.16 0.13 2.88 16 18 O -0.38 -4.67 10.40 -59.03 -0.61 -5.28 16 19 C 0.06 0.47 6.96 37.29 0.26 0.73 16 20 C -0.19 -1.48 6.35 -26.46 -0.17 -1.65 16 21 C 0.06 0.48 6.96 37.29 0.26 0.74 16 22 O -0.38 -4.63 10.11 -59.03 -0.60 -5.23 16 23 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 24 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 25 H 0.07 1.06 7.05 -51.93 -0.37 0.69 16 26 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 27 H 0.04 1.19 7.50 -51.93 -0.39 0.80 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.42 6.68 8.34 -34.47 -0.29 6.39 16 30 H 0.10 1.16 7.79 -51.93 -0.40 0.75 16 31 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 329.97 15.07 4.97 4.97 Total: -1.00 -35.99 329.97 -8.52 -44.51 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.63 Total: 0.77 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 0.65 Total: -0.54 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: 0.28 Total: -65.74 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -3.12 Total: -58.09 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 57.58 SS G_CDS: -0.65 Total: 56.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.99 -8.52 -44.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788416134.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.155 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds