Wall clock time and date at job start Tue Mar 31 2020 03:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38543 * 119.83264 * 2 1 4 4 C 1.37741 * 120.34397 * 180.02562 * 3 2 1 5 5 C 1.39811 * 120.00386 * 359.70551 * 4 3 2 6 6 C 1.47542 * 120.16853 * 180.27321 * 5 4 3 7 7 O 1.21584 * 120.00377 * 180.27381 * 6 5 4 8 8 N 1.34785 * 119.99974 * 0.27427 * 6 5 4 9 9 C 1.46499 * 119.99948 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47087 * 179.97438 * 9 8 6 11 11 O 1.21300 * 119.99849 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00249 * 180.02562 * 10 9 8 13 13 C 1.37095 * 120.00177 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99910 * 359.97438 * 13 12 10 15 15 C 1.38947 * 120.00192 * 180.02562 * 13 12 10 16 16 N 1.31418 * 119.99842 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00413 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47065 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47321 * 119.99607 * 17 15 13 20 20 H 1.48505 * 109.47210 * 240.00108 * 17 15 13 21 21 C 1.39971 * 119.66163 * 0.54443 * 5 4 3 22 22 O 1.35744 * 120.16670 * 179.74901 * 21 5 4 23 23 C 1.38434 * 119.83091 * 180.02562 * 2 1 3 24 24 O 1.35991 * 120.00487 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.47310 * 269.97392 * 1 2 3 26 26 H 1.08995 * 109.47353 * 29.97965 * 1 2 3 27 27 H 1.09001 * 109.46886 * 149.97874 * 1 2 3 28 28 H 1.07999 * 119.82768 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.99859 * 180.02562 * 4 3 2 30 30 H 0.97005 * 120.00049 * 359.97438 * 8 6 5 31 31 H 1.08994 * 109.47156 * 299.99948 * 9 8 6 32 32 H 1.09000 * 109.46695 * 60.00292 * 9 8 6 33 33 H 0.97004 * 119.99478 * 359.97438 * 12 10 9 34 34 H 0.96997 * 119.99919 * 179.97438 * 16 15 13 35 35 H 0.96700 * 114.00347 * 269.72670 * 22 21 5 36 36 H 0.96702 * 114.00104 * 269.97668 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.2018 0.0000 4 6 3.5736 1.2141 -0.0005 5 6 4.2835 0.0097 0.0051 6 6 5.7589 0.0186 0.0107 7 8 6.3732 -1.0306 0.0106 8 7 6.4257 1.1900 0.0159 9 6 7.8906 1.1988 0.0219 10 6 8.3843 2.6226 0.0263 11 8 7.5905 3.5398 0.0249 12 7 9.7078 2.8770 0.0316 13 6 10.1569 4.1723 0.0361 14 1 9.4501 4.9889 0.0349 15 6 11.5214 4.4346 0.0411 16 7 12.3815 3.4409 0.0420 17 14 12.1334 6.1994 0.0465 18 1 10.9728 7.1258 0.0438 19 1 12.9529 6.4355 1.2622 20 1 12.9610 6.4401 -1.1629 21 6 3.5874 -1.2047 -0.0002 22 8 4.2664 -2.3801 0.0001 23 6 2.1956 -1.2009 -0.0005 24 8 1.5123 -2.3767 -0.0016 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6507 2.1339 0.0004 29 1 4.1052 2.1542 -0.0001 30 1 5.9356 2.0271 0.0156 31 1 8.2534 0.6854 0.9123 32 1 8.2607 0.6891 -0.8677 33 1 10.3426 2.1435 0.0331 34 1 13.3340 3.6240 0.0451 35 1 4.4630 -2.7210 -0.8832 36 1 1.3146 -2.7175 0.8815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:27 Heat of formation + Delta-G solvation = -135.362688 kcal Electronic energy + Delta-G solvation = -22574.651811 eV Core-core repulsion = 18831.222505 eV Total energy + Delta-G solvation = -3743.429306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.77900 -39.25160 -38.11681 -37.04858 -36.70524 -34.47494 -33.72901 -32.52326 -31.39760 -29.44929 -28.55709 -26.82942 -24.53757 -22.81846 -22.56367 -20.49043 -19.68867 -18.76902 -18.20610 -18.05366 -17.00269 -16.72071 -15.75189 -15.69288 -15.18334 -15.09631 -14.98948 -14.42711 -14.15895 -14.05232 -13.81556 -13.65115 -13.36834 -12.96300 -12.69035 -12.23611 -12.10201 -12.06748 -11.74663 -11.65627 -11.41901 -11.15968 -10.63783 -10.42630 -10.34405 -9.67157 -9.66478 -9.01073 -8.82154 -8.72991 -8.66639 -8.12662 -6.53739 -3.95850 0.54746 0.88948 2.72847 3.08649 3.19166 3.22962 3.29585 3.53003 3.71694 3.83100 4.09306 4.12749 4.47955 4.63912 4.81271 4.85085 4.99022 5.14898 5.20565 5.24131 5.32353 5.49405 5.72502 5.84613 5.92029 5.93545 5.98020 6.04612 6.11074 6.34435 6.62547 7.25152 7.44127 7.61547 7.75931 7.89676 8.38564 8.43547 9.02212 9.36657 9.84184 10.63191 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.035453 B = 0.002824 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.594294 B = 9911.952386 C =10675.841252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.075 4.075 3 C -0.124 4.124 4 C -0.072 4.072 5 C -0.152 4.152 6 C 0.555 3.445 7 O -0.530 6.530 8 N -0.703 5.703 9 C 0.110 3.890 10 C 0.428 3.572 11 O -0.598 6.598 12 N -0.548 5.548 13 C -0.305 4.305 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.894 5.894 17 Si 0.933 3.067 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.149 3.851 22 O -0.471 6.471 23 C 0.064 3.936 24 O -0.487 6.487 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.409 0.591 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.397 0.603 36 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.146 -8.095 -0.109 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.076 4.076 3 C -0.142 4.142 4 C -0.091 4.091 5 C -0.156 4.156 6 C 0.341 3.659 7 O -0.407 6.407 8 N -0.358 5.358 9 C -0.018 4.018 10 C 0.213 3.787 11 O -0.485 6.485 12 N -0.183 5.183 13 C -0.434 4.434 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.534 5.534 17 Si 0.760 3.240 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.101 3.899 22 O -0.281 6.281 23 C 0.019 3.981 24 O -0.296 6.296 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.248 0.752 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.255 0.745 36 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -19.957 -8.112 -0.121 21.543 hybrid contribution 0.708 0.684 0.041 0.985 sum -19.249 -7.428 -0.079 20.632 Atomic orbital electron populations 1.20759 0.90114 1.03617 1.02702 1.20331 0.97060 0.92066 0.98173 1.20916 0.93747 0.97553 1.01982 1.21412 0.94406 0.97315 0.95951 1.20343 0.93844 0.93478 1.07902 1.17924 0.86539 0.83931 0.77496 1.90794 1.69095 1.31277 1.49576 1.45627 1.07125 1.08985 1.74072 1.20969 0.80340 0.97067 1.03413 1.19723 0.83828 0.89431 0.85668 1.90490 1.54667 1.45873 1.57498 1.41802 1.04729 1.09266 1.62481 1.19781 0.91485 0.83971 1.48183 0.87593 1.25338 0.95682 0.99969 0.96761 1.69625 1.02936 1.31565 1.49292 0.85750 0.78863 0.81587 0.77846 1.19116 1.20591 1.20598 1.18816 0.88615 0.85598 0.96853 1.84702 1.75645 1.34254 1.33539 1.18496 0.88526 0.85840 1.05276 1.84777 1.75440 1.35796 1.33623 0.90812 0.90956 0.90576 0.84599 0.84315 0.75162 0.89659 0.89683 0.76999 0.91603 0.74534 0.75420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.78 36.01 0.35 -0.40 16 2 C -0.08 -0.70 5.89 -104.44 -0.62 -1.32 16 3 C -0.12 -1.16 9.67 -39.65 -0.38 -1.54 16 4 C -0.07 -0.82 9.53 -39.18 -0.37 -1.19 16 5 C -0.15 -2.10 5.88 -104.87 -0.62 -2.72 16 6 C 0.55 9.28 7.76 -12.46 -0.10 9.19 16 7 O -0.53 -10.21 15.15 -16.61 -0.25 -10.46 16 8 N -0.70 -11.95 5.48 -62.53 -0.34 -12.30 16 9 C 0.11 2.03 6.15 -5.20 -0.03 2.00 16 10 C 0.43 9.75 7.85 -10.99 -0.09 9.66 16 11 O -0.60 -15.11 15.24 5.54 0.08 -15.02 16 12 N -0.55 -13.52 5.29 -10.96 -0.06 -13.58 16 13 C -0.30 -8.23 9.68 -14.94 -0.14 -8.37 16 14 H 0.11 2.98 7.16 -52.48 -0.38 2.60 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 16 N -0.89 -23.80 13.05 55.50 0.72 -23.07 16 17 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.15 1.94 6.73 -38.58 -0.26 1.68 16 22 O -0.47 -6.34 11.36 -47.54 -0.54 -6.88 16 23 C 0.06 0.69 6.68 -39.16 -0.26 0.43 16 24 O -0.49 -4.49 12.30 -34.24 -0.42 -4.91 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.08 0.51 7.51 -51.93 -0.39 0.12 16 28 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.14 1.47 6.40 -52.49 -0.34 1.13 16 30 H 0.41 6.70 5.46 -40.82 -0.22 6.47 16 31 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.40 9.41 7.90 -40.82 -0.32 9.08 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.40 4.06 9.06 45.56 0.41 4.48 16 36 H 0.39 2.07 9.06 45.56 0.41 2.48 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -33.53 321.29 -5.67 -39.20 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -2.07 Total: 18.83 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -2.61 Total: 7.98 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.32 Total: -48.95 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -1.13 Total: -37.28 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.53 -5.67 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.163 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds