Wall clock time and date at job start Tue Mar 31 2020 04:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34885 * 125.64837 * 2 1 4 4 C 1.35897 * 109.08354 * 180.23713 * 3 2 1 5 5 C 1.39365 * 107.91985 * 359.76559 * 4 3 2 6 6 C 1.37847 * 125.65153 * 179.83556 * 2 1 3 7 7 C 1.41523 * 126.31417 * 0.03396 * 6 2 1 8 8 O 1.21613 * 119.99998 * 359.71215 * 7 6 2 9 9 C 1.49055 * 119.99767 * 179.71181 * 7 6 2 10 10 O 1.21303 * 120.00434 * 0.02562 * 9 7 6 11 11 O 1.34579 * 119.99698 * 179.72036 * 9 7 6 12 12 C 1.45202 * 116.99787 * 180.27280 * 11 9 7 13 13 C 1.50701 * 109.46859 * 180.02562 * 12 11 9 14 14 O 1.21285 * 120.00079 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00119 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00208 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47180 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99862 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00014 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00003 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00050 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47407 * 89.99921 * 21 19 17 23 23 H 1.48503 * 109.46986 * 210.00292 * 21 19 17 24 24 H 1.48498 * 109.47104 * 329.99512 * 21 19 17 25 25 H 1.08997 * 109.47021 * 270.16667 * 1 2 3 26 26 H 1.09000 * 109.47191 * 30.16536 * 1 2 3 27 27 H 1.09001 * 109.47199 * 150.16731 * 1 2 3 28 28 H 1.08003 * 125.45756 * 0.02700 * 3 2 1 29 29 H 1.08000 * 126.03287 * 179.76813 * 4 3 2 30 30 H 1.08005 * 126.53142 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47630 * 300.00547 * 12 11 9 32 32 H 1.09004 * 109.46770 * 60.00951 * 12 11 9 33 33 H 0.96999 * 119.99691 * 0.02562 * 15 13 12 34 34 H 1.09006 * 109.46984 * 300.00038 * 16 15 13 35 35 H 1.09002 * 109.47272 * 59.99833 * 16 15 13 36 36 H 0.97002 * 119.99973 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0961 0.0000 4 6 3.5536 0.7086 -0.0053 5 6 3.5866 -0.6846 -0.0034 6 6 2.2684 -1.1201 0.0032 7 6 1.8303 -2.4658 0.0064 8 8 0.6406 -2.7179 0.0118 9 6 2.8270 -3.5741 0.0032 10 8 4.0137 -3.3226 -0.0017 11 8 2.4104 -4.8537 0.0119 12 6 3.4366 -5.8810 0.0143 13 6 2.7863 -7.2405 0.0236 14 8 1.5771 -7.3343 0.0274 15 7 3.5484 -8.3521 0.0278 16 6 2.9163 -9.6736 0.0363 17 6 3.9814 -10.7399 0.0401 18 1 5.0247 -10.4610 0.0362 19 6 3.6237 -12.0714 0.0487 20 7 2.3532 -12.4110 0.0540 21 14 4.9438 -13.3930 0.0542 22 1 5.2962 -13.7349 1.4557 23 1 4.4345 -14.6042 -0.6378 24 1 6.1502 -12.8906 -0.6511 25 1 -0.3633 0.0030 1.0276 26 1 -0.3633 0.8885 -0.5164 27 1 -0.3634 -0.8915 -0.5112 28 1 1.9013 2.1179 0.0004 29 1 4.4116 1.3646 -0.0102 30 1 4.4694 -1.3068 -0.0068 31 1 4.0539 -5.7800 -0.8783 32 1 4.0598 -5.7699 0.9017 33 1 4.5155 -8.2770 0.0251 34 1 2.2981 -9.7749 0.9283 35 1 2.2939 -9.7844 -0.8517 36 1 2.1016 -13.3478 0.0597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805650382.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:59 Heat of formation + Delta-G solvation = -90.630298 kcal Electronic energy + Delta-G solvation = -22179.219793 eV Core-core repulsion = 18437.730230 eV Total energy + Delta-G solvation = -3741.489564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04980 -40.68473 -39.02084 -38.54526 -36.62395 -34.25892 -33.36613 -32.41742 -30.52011 -29.42416 -27.02741 -26.95013 -25.64391 -22.80385 -22.08190 -21.05911 -20.00804 -19.65838 -18.01005 -17.87736 -17.24284 -16.99229 -16.49665 -15.96539 -15.54972 -15.32260 -15.03955 -14.88957 -14.43134 -14.10797 -14.00254 -13.72982 -13.23144 -12.95133 -12.75093 -12.70285 -12.65124 -12.46609 -12.00322 -11.79557 -11.58632 -11.01794 -10.93924 -10.80771 -10.34770 -10.15571 -9.44312 -9.19768 -9.17228 -8.78532 -8.71092 -7.99613 -6.19495 -4.27083 0.14051 1.62685 1.74222 2.38434 2.57150 2.99466 3.15990 3.23320 3.29398 3.31752 3.71121 4.27475 4.37388 4.38795 4.50261 4.55278 4.79101 4.94647 5.00597 5.08055 5.15231 5.17656 5.20930 5.30455 5.69422 5.77001 6.04896 6.26308 6.49374 6.71809 6.77297 7.21929 7.28778 7.39879 7.45763 7.60844 7.91789 8.48631 8.70628 8.95446 9.39253 10.90613 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.046972 B = 0.002399 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.954144 B =11670.990283 C =12241.177420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.406 5.406 3 C 0.045 3.955 4 C -0.222 4.222 5 C -0.078 4.078 6 C -0.105 4.105 7 C 0.439 3.561 8 O -0.416 6.416 9 C 0.444 3.556 10 O -0.474 6.474 11 O -0.303 6.303 12 C 0.044 3.956 13 C 0.499 3.501 14 O -0.530 6.530 15 N -0.706 5.706 16 C 0.251 3.749 17 C -0.545 4.545 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.174 0.826 29 H 0.149 0.851 30 H 0.169 0.831 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.393 0.607 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.037 28.051 -0.209 28.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.078 5.078 3 C -0.094 4.094 4 C -0.246 4.246 5 C -0.104 4.104 6 C -0.213 4.213 7 C 0.317 3.683 8 O -0.290 6.290 9 C 0.283 3.717 10 O -0.361 6.361 11 O -0.217 6.217 12 C -0.033 4.033 13 C 0.281 3.719 14 O -0.407 6.407 15 N -0.356 5.356 16 C 0.131 3.869 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.122 0.878 28 H 0.192 0.808 29 H 0.166 0.834 30 H 0.187 0.813 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.226 0.774 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.316 27.602 -0.208 27.605 hybrid contribution 1.325 -0.726 0.029 1.511 sum 1.640 26.876 -0.179 26.927 Atomic orbital electron populations 1.22413 0.75670 1.05667 1.04460 1.43865 1.07058 1.04980 1.51948 1.22261 0.90981 0.91710 1.04450 1.21071 0.96086 0.95431 1.12000 1.22307 0.95398 0.95363 0.97339 1.18917 0.91435 0.87156 1.23800 1.18893 0.87717 0.86296 0.75443 1.90704 1.17742 1.85941 1.34660 1.23776 0.89084 0.84518 0.74334 1.90740 1.17919 1.84596 1.42870 1.86722 1.39126 1.13960 1.81845 1.23053 0.89567 0.85674 1.05025 1.19829 0.88030 0.85015 0.79005 1.90739 1.13774 1.86916 1.49263 1.46353 1.09808 1.06967 1.72480 1.19191 0.93960 0.75695 0.98089 1.21200 0.92781 0.90816 1.53541 0.91739 1.24960 0.95767 0.98689 0.94623 1.69978 1.15553 1.17991 1.48638 0.86381 0.81264 0.80812 0.78250 1.20428 1.20988 1.19715 0.89997 0.89328 0.87830 0.80840 0.83366 0.81349 0.87961 0.87960 0.77392 0.95215 0.95208 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.53 59.84 0.63 1.01 16 2 N -0.41 -3.56 3.15 -121.67 -0.38 -3.95 16 3 C 0.05 0.30 11.35 -17.05 -0.19 0.11 16 4 C -0.22 -1.70 10.81 -40.00 -0.43 -2.14 16 5 C -0.08 -0.78 9.95 -38.94 -0.39 -1.17 16 6 C -0.11 -1.18 6.72 -83.69 -0.56 -1.74 16 7 C 0.44 5.85 7.00 -33.84 -0.24 5.61 16 8 O -0.42 -6.25 15.14 -8.11 -0.12 -6.38 16 9 C 0.44 6.31 7.99 35.22 0.28 6.59 16 10 O -0.47 -6.47 13.82 -19.11 -0.26 -6.73 16 11 O -0.30 -5.08 9.62 -49.23 -0.47 -5.55 16 12 C 0.04 0.66 5.95 36.01 0.21 0.88 16 13 C 0.50 10.09 7.91 -10.98 -0.09 10.00 16 14 O -0.53 -13.30 16.50 -14.11 -0.23 -13.53 16 15 N -0.71 -14.55 5.55 -61.47 -0.34 -14.89 16 16 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 17 C -0.55 -14.58 9.28 -34.44 -0.32 -14.90 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -25.91 13.29 55.43 0.74 -25.18 16 21 Si 0.91 20.68 29.54 -169.99 -5.02 15.65 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.10 0.85 6.27 -51.93 -0.33 0.52 16 28 H 0.17 0.50 8.06 -52.48 -0.42 0.07 16 29 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.17 1.71 6.08 -52.48 -0.32 1.39 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.39 6.70 8.32 -40.82 -0.34 6.36 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 327.80 15.07 4.94 4.94 Total: -1.00 -35.05 327.80 -6.28 -41.33 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -3.90 Total: 1.84 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -1.22 Total: 12.45 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.01 Total: -44.01 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.09 Total: -32.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.05 -6.28 -41.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805650382.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.302 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds