Wall clock time and date at job start Tue Mar 31 2020 04:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34885 * 125.64837 * 2 1 4 4 C 1.35897 * 109.08354 * 180.23713 * 3 2 1 5 5 C 1.39365 * 107.91985 * 359.76559 * 4 3 2 6 6 C 1.37847 * 125.65153 * 179.83556 * 2 1 3 7 7 C 1.41523 * 126.31417 * 0.03396 * 6 2 1 8 8 O 1.21613 * 119.99998 * 359.71215 * 7 6 2 9 9 C 1.49055 * 119.99767 * 179.71181 * 7 6 2 10 10 O 1.21303 * 120.00434 * 0.02562 * 9 7 6 11 11 O 1.34579 * 119.99698 * 179.72036 * 9 7 6 12 12 C 1.45202 * 116.99787 * 180.27280 * 11 9 7 13 13 C 1.50701 * 109.46859 * 180.02562 * 12 11 9 14 14 O 1.21285 * 120.00079 * 0.02562 * 13 12 11 15 15 N 1.34780 * 120.00119 * 180.02562 * 13 12 11 16 16 C 1.46493 * 120.00208 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47180 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99862 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00014 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00003 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00050 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47407 * 89.99921 * 21 19 17 23 23 H 1.48503 * 109.46986 * 210.00292 * 21 19 17 24 24 H 1.48498 * 109.47104 * 329.99512 * 21 19 17 25 25 H 1.08997 * 109.47021 * 270.16667 * 1 2 3 26 26 H 1.09000 * 109.47191 * 30.16536 * 1 2 3 27 27 H 1.09001 * 109.47199 * 150.16731 * 1 2 3 28 28 H 1.08003 * 125.45756 * 0.02700 * 3 2 1 29 29 H 1.08000 * 126.03287 * 179.76813 * 4 3 2 30 30 H 1.08005 * 126.53142 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.47630 * 300.00547 * 12 11 9 32 32 H 1.09004 * 109.46770 * 60.00951 * 12 11 9 33 33 H 0.96999 * 119.99691 * 0.02562 * 15 13 12 34 34 H 1.09006 * 109.46984 * 300.00038 * 16 15 13 35 35 H 1.09002 * 109.47272 * 59.99833 * 16 15 13 36 36 H 0.97002 * 119.99973 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0961 0.0000 4 6 3.5536 0.7086 -0.0053 5 6 3.5866 -0.6846 -0.0034 6 6 2.2684 -1.1201 0.0032 7 6 1.8303 -2.4658 0.0064 8 8 0.6406 -2.7179 0.0118 9 6 2.8270 -3.5741 0.0032 10 8 4.0137 -3.3226 -0.0017 11 8 2.4104 -4.8537 0.0119 12 6 3.4366 -5.8810 0.0143 13 6 2.7863 -7.2405 0.0236 14 8 1.5771 -7.3343 0.0274 15 7 3.5484 -8.3521 0.0278 16 6 2.9163 -9.6736 0.0363 17 6 3.9814 -10.7399 0.0401 18 1 5.0247 -10.4610 0.0362 19 6 3.6237 -12.0714 0.0487 20 7 2.3532 -12.4110 0.0540 21 14 4.9438 -13.3930 0.0542 22 1 5.2962 -13.7349 1.4557 23 1 4.4345 -14.6042 -0.6378 24 1 6.1502 -12.8906 -0.6511 25 1 -0.3633 0.0030 1.0276 26 1 -0.3633 0.8885 -0.5164 27 1 -0.3634 -0.8915 -0.5112 28 1 1.9013 2.1179 0.0004 29 1 4.4116 1.3646 -0.0102 30 1 4.4694 -1.3068 -0.0068 31 1 4.0539 -5.7800 -0.8783 32 1 4.0598 -5.7699 0.9017 33 1 4.5155 -8.2770 0.0251 34 1 2.2981 -9.7749 0.9283 35 1 2.2939 -9.7844 -0.8517 36 1 2.1016 -13.3478 0.0597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805650382.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:59 Heat of formation + Delta-G solvation = -114.781684 kcal Electronic energy + Delta-G solvation = -22180.267076 eV Core-core repulsion = 18437.730230 eV Total energy + Delta-G solvation = -3742.536846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.81968 -41.76283 -40.50062 -39.72440 -37.84671 -36.21450 -34.43548 -33.96602 -31.35057 -30.91701 -28.76873 -27.51630 -26.73929 -24.64643 -23.15480 -21.78662 -21.69834 -20.52341 -19.27961 -19.05998 -18.44762 -18.14598 -17.78821 -17.27600 -16.95604 -16.82184 -16.19540 -16.15778 -15.84758 -15.20800 -15.03660 -14.73715 -14.36675 -14.27857 -14.13438 -13.90939 -13.68441 -13.38698 -13.27035 -13.05093 -12.94626 -12.72024 -12.57738 -12.23177 -12.04765 -11.50774 -11.19485 -10.92987 -10.82506 -9.95814 -9.81591 -9.38939 -8.29914 -6.46853 -0.80384 0.71519 0.74631 1.44336 1.46486 1.51492 1.57891 1.71336 1.84673 2.12676 2.28374 2.45341 3.05330 3.14987 3.64380 3.67613 3.90933 3.97409 4.01037 4.06704 4.31928 4.37072 4.50185 4.69154 4.80052 5.06276 5.14670 5.20114 5.20555 5.40074 5.52076 5.61752 5.76234 5.80950 5.93376 6.19042 6.31645 6.61901 6.75088 7.19487 7.34383 8.82306 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.046972 B = 0.002399 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.954144 B =11670.990283 C =12241.177420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.411 5.411 3 C 0.074 3.926 4 C -0.230 4.230 5 C -0.081 4.081 6 C -0.142 4.142 7 C 0.438 3.562 8 O -0.452 6.452 9 C 0.446 3.554 10 O -0.467 6.467 11 O -0.333 6.333 12 C 0.055 3.945 13 C 0.497 3.503 14 O -0.586 6.586 15 N -0.695 5.695 16 C 0.265 3.735 17 C -0.556 4.556 18 H 0.088 0.912 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.987 3.013 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.254 1.254 25 H 0.087 0.913 26 H 0.126 0.874 27 H 0.079 0.921 28 H 0.221 0.779 29 H 0.175 0.825 30 H 0.163 0.837 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.414 0.586 34 H -0.009 1.009 35 H -0.008 1.008 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 30.676 -0.234 31.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.084 5.084 3 C -0.067 4.067 4 C -0.253 4.253 5 C -0.108 4.108 6 C -0.249 4.249 7 C 0.319 3.681 8 O -0.330 6.330 9 C 0.285 3.715 10 O -0.354 6.354 11 O -0.248 6.248 12 C -0.021 4.021 13 C 0.283 3.717 14 O -0.467 6.467 15 N -0.347 5.347 16 C 0.143 3.857 17 C -0.593 4.593 18 H 0.106 0.894 19 C -0.197 4.197 20 N -0.570 5.570 21 Si 0.810 3.190 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.178 1.178 25 H 0.106 0.894 26 H 0.144 0.856 27 H 0.097 0.903 28 H 0.238 0.762 29 H 0.192 0.808 30 H 0.180 0.820 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.251 0.749 34 H 0.009 0.991 35 H 0.010 0.990 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.019 30.264 -0.234 30.415 hybrid contribution 0.510 -1.336 0.038 1.430 sum 3.530 28.928 -0.196 29.144 Atomic orbital electron populations 1.22553 0.74572 1.06297 1.05076 1.44141 1.07938 1.04786 1.51490 1.23098 0.90396 0.92879 1.00298 1.21458 0.97653 0.94468 1.11696 1.22428 0.94699 0.96843 0.96844 1.18797 0.92494 0.86869 1.26787 1.19046 0.87106 0.86946 0.75043 1.90691 1.18579 1.86197 1.37533 1.24059 0.89554 0.83812 0.74090 1.90724 1.17671 1.84384 1.42660 1.86707 1.40349 1.15218 1.82498 1.22993 0.88758 0.82153 1.08195 1.20707 0.87333 0.86771 0.76897 1.90714 1.16504 1.87971 1.51478 1.46005 1.10863 1.05447 1.72411 1.18647 0.93704 0.78802 0.94553 1.21608 0.93712 0.91020 1.52992 0.89372 1.26092 0.98191 1.01599 0.93846 1.70145 1.18274 1.18684 1.49872 0.85120 0.78286 0.76992 0.78594 1.19617 1.21106 1.17762 0.89423 0.85604 0.90254 0.76244 0.80801 0.81995 0.84623 0.84620 0.74883 0.99070 0.99046 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 10.53 127.77 1.35 1.97 16 2 N -0.41 -6.41 3.15 -538.86 -1.70 -8.11 16 3 C 0.07 0.69 11.35 83.68 0.95 1.64 16 4 C -0.23 -2.77 10.81 22.00 0.24 -2.53 16 5 C -0.08 -1.52 9.95 22.68 0.23 -1.29 16 6 C -0.14 -3.13 6.72 39.15 0.26 -2.87 16 7 C 0.44 12.07 7.00 25.99 0.18 12.25 16 8 O -0.45 -14.47 15.14 8.71 0.13 -14.34 16 9 C 0.45 12.77 7.99 70.73 0.56 13.34 16 10 O -0.47 -12.34 13.82 20.47 0.28 -12.06 16 11 O -0.33 -11.34 9.62 -46.22 -0.44 -11.78 16 12 C 0.06 1.61 5.95 71.24 0.42 2.03 16 13 C 0.50 20.54 7.91 87.66 0.69 21.23 16 14 O -0.59 -31.02 16.50 15.75 0.26 -30.76 16 15 N -0.70 -28.97 5.55 -466.77 -2.59 -31.56 16 16 C 0.27 14.52 5.43 85.64 0.46 14.98 16 17 C -0.56 -29.83 9.28 25.60 0.24 -29.60 16 18 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 19 C 0.00 0.13 5.46 84.65 0.46 0.59 16 20 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 21 Si 0.99 42.04 29.54 68.60 2.03 44.06 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.08 1.34 6.27 -2.39 -0.01 1.33 16 28 H 0.22 -0.09 8.06 -2.91 -0.02 -0.11 16 29 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 30 H 0.16 3.13 6.08 -2.91 -0.02 3.12 16 31 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.14 3.07 8.14 -2.38 -0.02 3.05 16 33 H 0.41 13.58 8.32 -92.71 -0.77 12.81 16 34 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 35 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -81.40 327.80 4.67 -76.74 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.36 Total: 11.98 kcal Atomic # 6 Polarization: 25.70 SS G_CDS: 6.05 Total: 31.75 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -4.00 Total: -95.59 kcal Atomic # 8 Polarization: -69.17 SS G_CDS: 0.23 Total: -68.94 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -81.40 4.67 -76.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805650382.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.046 kcal (2) G-P(sol) polarization free energy of solvation -81.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds