Wall clock time and date at job start Tue Mar 31 2020 04:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35943 * 116.99808 * 2 1 4 4 C 1.38203 * 120.00947 * 359.72379 * 3 2 1 5 5 C 1.39746 * 119.85267 * 179.74995 * 4 3 2 6 6 C 1.47392 * 120.06044 * 180.25141 * 5 4 3 7 7 N 1.29811 * 119.99747 * 180.25229 * 6 5 4 8 8 N 1.40098 * 119.99761 * 180.02562 * 7 6 5 9 9 C 1.46501 * 120.00092 * 179.97438 * 8 7 6 10 10 C 1.50689 * 109.47384 * 179.97438 * 9 8 7 11 11 O 1.20826 * 120.00333 * 0.02562 * 10 9 8 12 12 O 1.34231 * 120.00437 * 180.02562 * 10 9 8 13 13 C 1.39808 * 119.87320 * 0.50283 * 5 4 3 14 14 C 1.37784 * 120.01367 * 359.77224 * 13 5 4 15 15 C 1.38947 * 120.14480 * 359.97438 * 14 13 5 16 16 O 1.35711 * 119.93438 * 179.97438 * 15 14 13 17 17 C 1.34795 * 117.00326 * 354.37990 * 16 15 14 18 18 H 1.08004 * 119.99543 * 5.06861 * 17 16 15 19 19 C 1.38595 * 120.00341 * 185.06057 * 17 16 15 20 20 N 1.31592 * 119.99992 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00174 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47052 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47026 * 120.00336 * 21 19 17 24 24 H 1.48506 * 109.47097 * 240.00522 * 21 19 17 25 25 H 1.09002 * 109.47452 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47514 * 60.00448 * 1 2 3 27 27 H 1.09006 * 109.47366 * 300.00034 * 1 2 3 28 28 H 1.07994 * 120.07117 * 359.97438 * 4 3 2 29 29 H 1.08006 * 120.00231 * 0.25283 * 6 5 4 30 30 H 0.96998 * 120.00137 * 359.97438 * 8 7 6 31 31 H 1.08997 * 109.47007 * 300.00010 * 9 8 7 32 32 H 1.09007 * 109.46780 * 59.99542 * 9 8 7 33 33 H 0.96702 * 117.00562 * 180.02562 * 12 10 9 34 34 H 1.08000 * 119.99379 * 179.74403 * 13 5 4 35 35 H 1.07999 * 119.92663 * 179.97438 * 14 13 5 36 36 H 0.96999 * 120.00505 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2936 2.3704 -0.0058 5 6 1.9313 3.6139 -0.0005 6 6 1.1332 4.8530 -0.0010 7 7 1.7269 6.0074 -0.0010 8 7 0.9683 7.1852 -0.0009 9 6 1.6383 8.4880 -0.0004 10 6 0.6046 9.5845 -0.0011 11 8 -0.5712 9.3063 -0.0015 12 8 0.9899 10.8703 -0.0013 13 6 3.3279 3.6802 0.0000 14 6 4.0729 2.5212 0.0000 15 6 3.4395 1.2845 0.0001 16 8 4.1775 0.1456 -0.0005 17 6 5.5133 0.2820 -0.1186 18 1 5.9570 1.2666 -0.1250 19 6 6.3173 -0.8412 -0.2319 20 7 5.7766 -2.0409 -0.2245 21 14 8.1684 -0.6521 -0.3964 22 1 8.5222 0.7900 -0.3784 23 1 8.8388 -1.3399 0.7362 24 1 8.6158 -1.2561 -1.6772 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.2151 2.3154 -0.0107 29 1 0.0544 4.8006 -0.0013 30 1 -0.0005 7.1381 -0.0013 31 1 2.2611 8.5759 0.8898 32 1 2.2618 8.5763 -0.8902 33 1 0.2907 11.5383 -0.0013 34 1 3.8228 4.6401 -0.0001 35 1 5.1516 2.5741 0.0000 36 1 6.3392 -2.8270 -0.3042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814958947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:44 Heat of formation + Delta-G solvation = -74.225379 kcal Electronic energy + Delta-G solvation = -21999.856732 eV Core-core repulsion = 18259.078539 eV Total energy + Delta-G solvation = -3740.778193 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.68516 -39.58805 -37.54509 -37.22093 -36.60798 -35.63156 -32.80413 -32.19138 -29.66537 -29.24814 -27.21264 -26.13650 -25.28939 -22.78326 -21.86740 -21.48580 -20.19169 -18.57497 -18.08236 -17.80436 -17.21372 -16.52637 -16.32280 -15.78308 -15.15024 -15.14073 -15.02305 -14.56315 -14.05171 -13.86449 -13.69211 -13.46119 -13.37358 -13.19753 -12.33405 -12.29133 -12.00446 -11.70616 -11.47794 -11.35116 -11.12317 -11.05018 -10.96636 -10.69317 -10.42561 -10.35802 -9.91473 -9.42770 -8.93287 -8.26139 -7.80113 -6.75021 -6.48635 -4.02183 1.56175 1.70536 2.18750 2.22319 3.00506 3.13230 3.18317 3.19442 3.21613 3.93397 4.01771 4.57960 4.68055 5.00749 5.02959 5.04083 5.10676 5.17798 5.38194 5.54072 5.57569 5.74183 5.86819 5.89366 5.98606 6.15338 6.32895 6.36547 6.57611 6.90751 7.00978 7.13266 7.22170 7.34726 7.40087 7.59015 7.92004 8.15935 8.55633 8.95405 9.65159 10.67975 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.002936 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.540787 B = 9535.193311 C =11004.187898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.303 6.303 3 C 0.053 3.947 4 C -0.140 4.140 5 C -0.123 4.123 6 C 0.112 3.888 7 N -0.251 5.251 8 N -0.673 5.673 9 C 0.173 3.827 10 C 0.479 3.521 11 O -0.515 6.515 12 O -0.511 6.511 13 C -0.053 4.053 14 C -0.222 4.222 15 C 0.146 3.854 16 O -0.156 6.156 17 C -0.389 4.389 18 H 0.096 0.904 19 C 0.040 3.960 20 N -0.852 5.852 21 Si 0.943 3.057 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.275 1.275 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.383 0.617 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.415 0.585 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 17.142 0.239 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.217 6.217 3 C 0.008 3.992 4 C -0.162 4.162 5 C -0.127 4.127 6 C -0.098 4.098 7 N -0.058 5.058 8 N -0.415 5.415 9 C 0.047 3.953 10 C 0.320 3.680 11 O -0.403 6.403 12 O -0.323 6.323 13 C -0.074 4.074 14 C -0.242 4.242 15 C 0.089 3.911 16 O -0.057 6.057 17 C -0.465 4.465 18 H 0.114 0.886 19 C -0.166 4.166 20 N -0.485 5.485 21 Si 0.767 3.233 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.201 1.201 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.139 0.861 29 H 0.118 0.882 30 H 0.223 0.777 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.274 0.726 34 H 0.138 0.862 35 H 0.154 0.846 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.542 16.762 0.242 18.382 hybrid contribution -1.164 0.538 -0.081 1.285 sum -8.707 17.300 0.161 19.368 Atomic orbital electron populations 1.22896 0.80390 1.02946 1.00292 1.86243 1.19389 1.26253 1.89773 1.17981 0.89367 0.84412 1.07453 1.20669 0.98409 0.90699 1.06400 1.17491 0.92381 0.89089 1.13774 1.23908 0.96668 0.90245 0.98971 1.74216 1.24540 0.92654 1.14369 1.47390 1.05937 0.99983 1.88239 1.19984 0.91562 0.78697 1.05106 1.23434 0.89450 0.83589 0.71508 1.90726 1.20063 1.83700 1.45786 1.84492 1.45368 1.16942 1.85476 1.20862 0.92346 0.97552 0.96601 1.20880 1.00729 0.90749 1.11827 1.18836 0.88272 0.87750 0.96202 1.84028 1.19577 1.25602 1.76515 1.21488 0.78519 0.94968 1.51531 0.88647 1.25348 1.00641 0.94226 0.96386 1.70090 1.36228 0.97688 1.44508 0.85617 0.80344 0.78990 0.78317 1.18897 1.20094 1.20079 0.89108 0.93525 0.93545 0.86057 0.88199 0.77733 0.88156 0.88161 0.72565 0.86187 0.84611 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.44 10.28 -34.18 -0.35 -6.80 16 3 C 0.05 1.14 6.70 -39.11 -0.26 0.88 16 4 C -0.14 -2.48 8.77 -39.03 -0.34 -2.82 16 5 C -0.12 -2.15 5.87 -105.02 -0.62 -2.77 16 6 C 0.11 1.67 10.74 -14.68 -0.16 1.51 16 7 N -0.25 -3.72 10.60 32.15 0.34 -3.37 16 8 N -0.67 -8.35 6.60 -11.66 -0.08 -8.43 16 9 C 0.17 1.59 7.26 -5.20 -0.04 1.55 16 10 C 0.48 4.18 8.40 36.00 0.30 4.48 16 11 O -0.51 -6.08 16.43 -18.75 -0.31 -6.39 16 12 O -0.51 -3.00 13.42 -39.26 -0.53 -3.53 16 13 C -0.05 -0.98 9.57 -39.16 -0.37 -1.36 16 14 C -0.22 -4.74 9.14 -39.49 -0.36 -5.10 16 15 C 0.15 3.53 6.67 -38.84 -0.26 3.27 16 16 O -0.16 -4.45 9.53 -14.35 -0.14 -4.59 16 17 C -0.39 -10.69 9.48 30.86 0.29 -10.39 16 18 H 0.10 2.39 5.19 -52.48 -0.27 2.12 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.85 -24.75 13.67 55.48 0.76 -23.99 16 21 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.05 0.59 7.65 -51.93 -0.40 0.20 16 27 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 28 H 0.12 1.74 6.28 -52.49 -0.33 1.41 16 29 H 0.10 1.26 8.02 -52.48 -0.42 0.84 16 30 H 0.38 4.72 7.40 -182.60 -1.35 3.37 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.41 0.71 9.10 45.56 0.41 1.13 16 34 H 0.12 2.03 7.54 -52.49 -0.40 1.64 16 35 H 0.14 2.85 5.62 -52.49 -0.29 2.56 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 326.52 15.07 4.92 4.92 Total: -1.00 -34.20 326.52 -5.17 -39.37 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.85 Total: 6.07 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.92 Total: -8.35 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 1.02 Total: -35.80 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.32 Total: -21.30 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.20 -5.17 -39.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814958947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.856 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds