Wall clock time and date at job start Tue Mar 31 2020 04:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35943 * 116.99808 * 2 1 4 4 C 1.38203 * 120.00947 * 359.72379 * 3 2 1 5 5 C 1.39746 * 119.85267 * 179.74995 * 4 3 2 6 6 C 1.47392 * 120.06044 * 180.25141 * 5 4 3 7 7 N 1.29811 * 119.99747 * 180.25229 * 6 5 4 8 8 N 1.40098 * 119.99761 * 180.02562 * 7 6 5 9 9 C 1.46501 * 120.00092 * 179.97438 * 8 7 6 10 10 C 1.50689 * 109.47384 * 179.97438 * 9 8 7 11 11 O 1.20826 * 120.00333 * 0.02562 * 10 9 8 12 12 O 1.34231 * 120.00437 * 180.02562 * 10 9 8 13 13 C 1.39808 * 119.87320 * 0.50283 * 5 4 3 14 14 C 1.37784 * 120.01367 * 359.77224 * 13 5 4 15 15 C 1.38947 * 120.14480 * 359.97438 * 14 13 5 16 16 O 1.35711 * 119.93438 * 179.97438 * 15 14 13 17 17 C 1.34795 * 117.00326 * 354.37990 * 16 15 14 18 18 H 1.08004 * 119.99543 * 5.06861 * 17 16 15 19 19 C 1.38595 * 120.00341 * 185.06057 * 17 16 15 20 20 N 1.31592 * 119.99992 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00174 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47052 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47026 * 120.00336 * 21 19 17 24 24 H 1.48506 * 109.47097 * 240.00522 * 21 19 17 25 25 H 1.09002 * 109.47452 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47514 * 60.00448 * 1 2 3 27 27 H 1.09006 * 109.47366 * 300.00034 * 1 2 3 28 28 H 1.07994 * 120.07117 * 359.97438 * 4 3 2 29 29 H 1.08006 * 120.00231 * 0.25283 * 6 5 4 30 30 H 0.96998 * 120.00137 * 359.97438 * 8 7 6 31 31 H 1.08997 * 109.47007 * 300.00010 * 9 8 7 32 32 H 1.09007 * 109.46780 * 59.99542 * 9 8 7 33 33 H 0.96702 * 117.00562 * 180.02562 * 12 10 9 34 34 H 1.08000 * 119.99379 * 179.74403 * 13 5 4 35 35 H 1.07999 * 119.92663 * 179.97438 * 14 13 5 36 36 H 0.96999 * 120.00505 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2936 2.3704 -0.0058 5 6 1.9313 3.6139 -0.0005 6 6 1.1332 4.8530 -0.0010 7 7 1.7269 6.0074 -0.0010 8 7 0.9683 7.1852 -0.0009 9 6 1.6383 8.4880 -0.0004 10 6 0.6046 9.5845 -0.0011 11 8 -0.5712 9.3063 -0.0015 12 8 0.9899 10.8703 -0.0013 13 6 3.3279 3.6802 0.0000 14 6 4.0729 2.5212 0.0000 15 6 3.4395 1.2845 0.0001 16 8 4.1775 0.1456 -0.0005 17 6 5.5133 0.2820 -0.1186 18 1 5.9570 1.2666 -0.1250 19 6 6.3173 -0.8412 -0.2319 20 7 5.7766 -2.0409 -0.2245 21 14 8.1684 -0.6521 -0.3964 22 1 8.5222 0.7900 -0.3784 23 1 8.8388 -1.3399 0.7362 24 1 8.6158 -1.2561 -1.6772 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.2151 2.3154 -0.0107 29 1 0.0544 4.8006 -0.0013 30 1 -0.0005 7.1381 -0.0013 31 1 2.2611 8.5759 0.8898 32 1 2.2618 8.5763 -0.8902 33 1 0.2907 11.5383 -0.0013 34 1 3.8228 4.6401 -0.0001 35 1 5.1516 2.5741 0.0000 36 1 6.3392 -2.8270 -0.3042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814958947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:43 Heat of formation + Delta-G solvation = -100.320421 kcal Electronic energy + Delta-G solvation = -22000.988298 eV Core-core repulsion = 18259.078539 eV Total energy + Delta-G solvation = -3741.909759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36012 -41.19168 -39.21486 -38.44987 -37.42962 -36.86361 -34.36167 -33.63169 -31.20097 -30.66085 -28.35117 -27.52541 -26.95670 -24.14517 -23.19367 -22.48408 -21.51987 -19.85776 -19.36498 -19.12758 -18.47538 -17.47091 -17.27492 -17.20629 -16.59229 -16.43661 -16.25929 -16.06780 -15.47058 -15.18842 -15.10266 -14.87024 -14.82319 -13.95482 -13.89020 -13.50096 -13.43566 -12.90904 -12.84817 -12.66128 -12.64667 -12.42985 -12.12211 -11.98010 -11.83419 -11.71578 -11.37411 -10.97507 -10.79149 -9.68584 -9.16451 -8.42543 -8.28066 -6.06389 0.13435 0.63464 1.04242 1.38998 1.41165 1.44223 1.57717 1.72028 2.21091 2.39625 2.64135 2.91448 3.21552 3.45164 3.86898 4.01631 4.16621 4.35257 4.35801 4.38247 4.39222 4.50907 4.50972 4.59917 4.77856 4.80352 5.02059 5.03071 5.18156 5.48996 5.50494 5.63326 5.74953 5.99147 6.05140 6.07661 6.68664 6.86637 7.01709 7.43891 7.83485 8.80735 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.002936 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.540787 B = 9535.193311 C =11004.187898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.344 6.344 3 C 0.043 3.957 4 C -0.129 4.129 5 C -0.090 4.090 6 C 0.095 3.905 7 N -0.247 5.247 8 N -0.668 5.668 9 C 0.164 3.836 10 C 0.491 3.509 11 O -0.549 6.549 12 O -0.502 6.502 13 C -0.065 4.065 14 C -0.216 4.216 15 C 0.096 3.904 16 O -0.217 6.217 17 C -0.411 4.411 18 H 0.106 0.894 19 C -0.024 4.024 20 N -0.918 5.918 21 Si 1.020 2.980 22 H -0.248 1.248 23 H -0.270 1.270 24 H -0.270 1.270 25 H 0.106 0.894 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.164 0.836 29 H 0.133 0.867 30 H 0.386 0.614 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.435 0.565 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.024 21.096 0.189 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C -0.002 4.002 4 C -0.150 4.150 5 C -0.093 4.093 6 C -0.115 4.115 7 N -0.055 5.055 8 N -0.410 5.410 9 C 0.039 3.961 10 C 0.334 3.666 11 O -0.440 6.440 12 O -0.315 6.315 13 C -0.085 4.085 14 C -0.236 4.236 15 C 0.044 3.956 16 O -0.123 6.123 17 C -0.487 4.487 18 H 0.123 0.877 19 C -0.222 4.222 20 N -0.556 5.556 21 Si 0.839 3.161 22 H -0.171 1.171 23 H -0.195 1.195 24 H -0.195 1.195 25 H 0.125 0.875 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.181 0.819 29 H 0.150 0.850 30 H 0.226 0.774 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.298 0.702 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.999 20.829 0.195 22.691 hybrid contribution -1.124 -0.139 -0.050 1.133 sum -10.123 20.690 0.146 23.034 Atomic orbital electron populations 1.23289 0.77058 1.04897 1.02279 1.86198 1.23023 1.26788 1.89875 1.18306 0.88893 0.85840 1.07162 1.21055 1.00284 0.89241 1.04457 1.17878 0.92150 0.90486 1.08794 1.23757 0.97774 0.89046 1.00951 1.74068 1.25990 0.93588 1.11832 1.47541 1.06259 1.00132 1.87106 1.20233 0.91821 0.77485 1.06571 1.23219 0.88533 0.84276 0.70578 1.90728 1.21320 1.84307 1.47646 1.84445 1.46183 1.16283 1.84628 1.21065 0.93127 0.97212 0.97126 1.20993 1.00823 0.90974 1.10765 1.19500 0.89761 0.87893 0.98488 1.84005 1.19994 1.27691 1.80571 1.21947 0.79080 0.95721 1.51970 0.87695 1.26617 1.06007 0.93602 0.95951 1.70242 1.38224 0.98708 1.48394 0.84514 0.73455 0.79743 0.78386 1.17126 1.19471 1.19501 0.87537 0.91387 0.91333 0.81852 0.85006 0.77444 0.86632 0.86653 0.70232 0.84185 0.85225 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 16 2 O -0.34 -14.94 10.28 -78.93 -0.81 -15.75 16 3 C 0.04 1.87 6.70 22.57 0.15 2.02 16 4 C -0.13 -4.24 8.77 22.63 0.20 -4.04 16 5 C -0.09 -2.86 5.87 -20.12 -0.12 -2.98 16 6 C 0.10 2.42 10.74 87.40 0.94 3.36 16 7 N -0.25 -6.29 10.60 -52.20 -0.55 -6.85 16 8 N -0.67 -13.88 6.60 -190.80 -1.26 -15.14 16 9 C 0.16 2.37 7.26 85.63 0.62 3.00 16 10 C 0.49 6.92 8.40 71.23 0.60 7.51 16 11 O -0.55 -11.43 16.43 21.96 0.36 -11.07 16 12 O -0.50 -4.08 13.42 -51.43 -0.69 -4.77 16 13 C -0.06 -2.31 9.57 22.54 0.22 -2.09 16 14 C -0.22 -9.43 9.14 22.33 0.20 -9.23 16 15 C 0.10 4.85 6.67 22.75 0.15 5.00 16 16 O -0.22 -13.33 9.53 -7.98 -0.08 -13.41 16 17 C -0.41 -24.09 9.48 67.91 0.64 -23.45 16 18 H 0.11 5.58 5.19 -2.91 -0.02 5.56 16 19 C -0.02 -1.38 5.49 84.81 0.47 -0.92 16 20 N -0.92 -57.20 13.67 21.60 0.30 -56.91 16 21 Si 1.02 43.06 29.55 68.60 2.03 45.09 16 22 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.07 1.54 7.65 -2.39 -0.02 1.53 16 27 H 0.07 1.55 7.67 -2.38 -0.02 1.53 16 28 H 0.16 3.92 6.28 -2.91 -0.02 3.90 16 29 H 0.13 2.59 8.02 -2.91 -0.02 2.57 16 30 H 0.39 7.99 7.40 -213.32 -1.58 6.41 16 31 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.43 -0.04 9.10 -74.06 -0.67 -0.71 16 34 H 0.14 4.40 7.54 -2.91 -0.02 4.37 16 35 H 0.13 5.67 5.62 -2.91 -0.02 5.66 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -81.00 326.52 3.38 -77.61 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -1.09 Total: 21.38 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 5.18 Total: -20.18 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -1.52 Total: -78.89 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.22 Total: -45.01 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -81.00 3.38 -77.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814958947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.706 kcal (2) G-P(sol) polarization free energy of solvation -80.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds