Wall clock time and date at job start Tue Mar 31 2020 03:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35654 * 120.00260 * 2 1 4 4 C 1.41479 * 120.00014 * 180.02562 * 3 2 1 5 5 O 1.21783 * 120.00240 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99618 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72290 * 6 4 3 8 8 C 1.50703 * 109.47138 * 180.28062 * 7 6 4 9 9 O 1.21293 * 120.00086 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00069 * 180.02562 * 8 7 6 11 11 C 1.37097 * 120.00084 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00027 * 359.97438 * 11 10 8 13 13 C 1.38954 * 119.99944 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00276 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99680 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47135 * 90.00298 * 15 13 11 17 17 H 1.48500 * 109.46751 * 210.00274 * 15 13 11 18 18 H 1.48499 * 109.47283 * 330.00462 * 15 13 11 19 19 C 1.41585 * 119.99924 * 180.02562 * 2 1 3 20 20 C 1.37037 * 125.47491 * 294.99926 * 19 2 1 21 21 C 1.37433 * 113.22149 * 179.97438 * 20 19 2 22 22 C 1.33860 * 115.12910 * 359.97438 * 21 20 19 23 23 S 1.70599 * 111.01575 * 359.76639 * 22 21 20 24 24 H 1.09000 * 109.47363 * 89.99869 * 1 2 3 25 25 H 1.09000 * 109.47097 * 209.99701 * 1 2 3 26 26 H 1.09006 * 109.46991 * 329.99725 * 1 2 3 27 27 H 1.08001 * 119.99571 * 0.02562 * 3 2 1 28 28 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 29 29 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 30 30 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 31 31 H 0.97002 * 120.00050 * 359.97438 * 10 8 7 32 32 H 0.96997 * 119.99888 * 179.97438 * 14 13 11 33 33 H 1.08001 * 123.38862 * 359.93955 * 20 19 2 34 34 H 1.08003 * 122.43332 * 180.02562 * 21 20 19 35 35 H 1.08004 * 124.48863 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1853 1.1748 0.0000 4 6 3.6000 1.1747 -0.0005 5 8 4.2090 0.1200 -0.0005 6 7 4.2739 2.3419 -0.0011 7 6 5.7389 2.3419 0.0045 8 6 6.2413 3.7627 0.0096 9 8 5.4531 4.6847 0.0082 10 7 7.5663 4.0090 0.0147 11 6 8.0233 5.3015 0.0188 12 1 7.3215 6.1224 0.0176 13 6 9.3895 5.5554 0.0246 14 7 10.2434 4.5565 0.0256 15 14 10.0121 7.3166 0.0295 16 1 10.1716 7.7813 1.4308 17 1 11.3230 7.3800 -0.6654 18 1 9.0367 8.1884 -0.6731 19 6 2.2148 -1.2262 -0.0005 20 6 2.2040 -2.1512 1.0105 21 6 2.9818 -3.2528 0.7454 22 6 3.6078 -3.2353 -0.4377 23 16 3.2426 -1.8106 -1.3021 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6452 2.1101 0.0004 28 1 3.7890 3.1820 -0.0007 29 1 6.0989 1.8261 0.8948 30 1 6.1056 1.8301 -0.8852 31 1 8.1966 3.2717 0.0154 32 1 11.1970 4.7338 0.0292 33 1 1.6414 -2.0267 1.9239 34 1 3.0802 -4.0733 1.4407 35 1 4.2547 -4.0211 -0.7990 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857257793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:16 Heat of formation + Delta-G solvation = -18.063209 kcal Electronic energy + Delta-G solvation = -20216.682555 eV Core-core repulsion = 16921.092607 eV Total energy + Delta-G solvation = -3295.589948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.93435 -38.35682 -37.61274 -35.04412 -34.33293 -33.60464 -31.37828 -29.35183 -28.53834 -27.01178 -24.75222 -24.16050 -21.37176 -20.00877 -19.57093 -18.96470 -18.12510 -17.53652 -16.34997 -15.65127 -15.45396 -15.20034 -14.97311 -14.42841 -14.03110 -14.01186 -13.90403 -13.45189 -13.42404 -12.68249 -12.56250 -12.41614 -12.21097 -12.12487 -11.96855 -11.85040 -11.62374 -11.12114 -10.73407 -10.45622 -10.31348 -9.86955 -9.62924 -9.24203 -8.79550 -8.61637 -8.24404 -8.09147 -7.80043 -6.50823 -3.92801 0.56816 1.39267 2.05269 2.27590 2.83537 3.12066 3.22156 3.27250 3.54308 3.60764 3.76633 4.12895 4.72467 4.85084 4.91544 5.14540 5.17887 5.19984 5.29240 5.39155 5.56426 5.59017 5.63425 5.93137 5.98025 6.00533 6.09587 6.17566 6.23921 6.48054 6.59039 6.76661 7.46547 7.90796 7.93273 8.45775 8.55309 9.05378 9.40412 9.88466 10.66137 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.029830 B = 0.003028 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.415578 B = 9245.661019 C = 9908.699048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.032 3.968 3 C -0.206 4.206 4 C 0.533 3.467 5 O -0.540 6.540 6 N -0.703 5.703 7 C 0.111 3.889 8 C 0.428 3.572 9 O -0.598 6.598 10 N -0.550 5.550 11 C -0.305 4.305 12 H 0.105 0.895 13 C 0.026 3.974 14 N -0.895 5.895 15 Si 0.933 3.067 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.269 1.269 19 C -0.170 4.170 20 C -0.123 4.123 21 C -0.145 4.145 22 C -0.268 4.268 23 S 0.253 5.747 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.134 0.866 28 H 0.409 0.591 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.396 0.604 32 H 0.274 0.726 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.340 -13.387 -1.056 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.028 3.972 3 C -0.230 4.230 4 C 0.323 3.677 5 O -0.421 6.421 6 N -0.356 5.356 7 C -0.017 4.017 8 C 0.214 3.786 9 O -0.485 6.485 10 N -0.185 5.185 11 C -0.435 4.435 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.535 5.535 15 Si 0.760 3.240 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.288 4.288 20 C -0.154 4.154 21 C -0.177 4.177 22 C -0.406 4.406 23 S 0.526 5.474 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.152 0.848 28 H 0.247 0.753 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.694 -12.987 -2.522 20.526 hybrid contribution 0.474 0.265 1.620 1.708 sum -15.220 -12.722 -0.903 19.858 Atomic orbital electron populations 1.20986 0.89914 1.03560 1.03122 1.19383 0.95389 0.90430 0.91981 1.22089 0.94366 0.98607 1.07975 1.17138 0.88555 0.83893 0.78115 1.90985 1.71138 1.29826 1.50152 1.45716 1.06909 1.09236 1.73786 1.20901 0.80971 0.96712 1.03102 1.19795 0.83757 0.89611 0.85453 1.90491 1.55122 1.45502 1.57337 1.41800 1.04747 1.09214 1.62694 1.19733 0.91391 0.84106 1.48228 0.87698 1.25324 0.95702 0.99879 0.96818 1.69615 1.03094 1.31423 1.49398 0.85816 0.78119 0.81618 0.78492 1.20271 1.20801 1.19309 1.22224 1.05986 0.99288 1.01304 1.20481 1.02503 0.93252 0.99119 1.19735 1.00374 0.99991 0.97626 1.25115 1.08902 1.04657 1.01921 1.82755 1.40264 1.07992 1.16433 0.90076 0.90768 0.90551 0.84849 0.75304 0.89974 0.89927 0.77051 0.91604 0.84779 0.85245 0.82654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.02 36.00 0.36 -0.52 16 2 C 0.03 0.36 5.71 -104.27 -0.60 -0.23 16 3 C -0.21 -2.56 9.48 -39.27 -0.37 -2.93 16 4 C 0.53 8.50 7.51 -15.03 -0.11 8.39 16 5 O -0.54 -9.68 11.71 5.11 0.06 -9.62 16 6 N -0.70 -11.91 5.52 -64.44 -0.36 -12.27 16 7 C 0.11 2.08 6.15 -5.19 -0.03 2.05 16 8 C 0.43 9.94 7.85 -10.98 -0.09 9.85 16 9 O -0.60 -15.43 15.24 5.55 0.08 -15.35 16 10 N -0.55 -13.78 5.29 -10.96 -0.06 -13.83 16 11 C -0.31 -8.36 9.68 -14.93 -0.14 -8.50 16 12 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 13 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 14 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 15 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 C -0.17 -2.19 3.85 -38.74 -0.15 -2.34 16 20 C -0.12 -1.50 10.25 -40.31 -0.41 -1.92 16 21 C -0.15 -1.74 10.14 -41.41 -0.42 -2.16 16 22 C -0.27 -3.27 10.92 29.19 0.32 -2.95 16 23 S 0.25 3.29 20.31 -107.50 -2.18 1.11 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 26 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 28 H 0.41 6.80 7.39 -40.82 -0.30 6.50 16 29 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.40 9.56 7.90 -40.82 -0.32 9.23 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 35 H 0.16 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -31.66 322.65 -7.57 -39.22 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -3.93 Total: 14.28 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -1.74 Total: -0.68 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.31 Total: -49.44 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: 0.14 Total: -24.97 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -2.18 Total: 1.11 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.66 -7.57 -39.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857257793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.160 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds