Wall clock time and date at job start Tue Mar 31 2020 02:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46828 * 2 1 4 4 N 1.46502 * 109.46550 * 179.97438 * 3 2 1 5 5 C 1.35312 * 125.86609 * 125.32886 * 4 3 2 6 6 C 1.35355 * 106.17451 * 180.11644 * 5 4 3 7 7 C 1.50700 * 126.75182 * 179.85260 * 6 5 4 8 8 N 1.46899 * 109.47239 * 94.70734 * 7 6 5 9 9 C 1.46902 * 111.00293 * 179.97438 * 8 7 6 10 10 C 1.53036 * 109.46201 * 275.07429 * 9 8 7 11 11 C 1.53193 * 109.31029 * 178.61139 * 10 9 8 12 12 N 1.46930 * 108.77556 * 54.63602 * 11 10 9 13 13 C 1.36937 * 120.63232 * 126.41527 * 12 11 10 14 14 H 1.08008 * 119.99586 * 331.82015 * 13 12 11 15 15 C 1.38811 * 120.00302 * 151.82566 * 13 12 11 16 16 N 1.31618 * 119.99696 * 343.06358 * 15 13 12 17 17 Si 1.86793 * 120.00115 * 163.06508 * 15 13 12 18 18 H 1.48498 * 109.47166 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46918 * 120.00144 * 17 15 13 20 20 H 1.48497 * 109.47299 * 239.99902 * 17 15 13 21 21 C 1.46924 * 118.73635 * 306.38447 * 12 11 10 22 22 C 1.53039 * 109.46252 * 154.99978 * 9 8 7 23 23 N 1.33770 * 106.49519 * 359.58849 * 6 5 4 24 24 N 1.28635 * 108.88712 * 0.26191 * 23 6 5 25 25 H 1.09000 * 109.46762 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47227 * 300.00136 * 1 2 3 27 27 H 1.08999 * 109.46638 * 60.00002 * 1 2 3 28 28 H 1.08997 * 109.47227 * 239.99864 * 2 1 3 29 29 H 1.08999 * 109.46638 * 119.99998 * 2 1 3 30 30 H 1.08997 * 109.47328 * 59.99926 * 3 2 1 31 31 H 1.08999 * 109.47509 * 299.99464 * 3 2 1 32 32 H 1.08002 * 126.91712 * 359.96530 * 5 4 3 33 33 H 1.09004 * 109.47100 * 334.70962 * 7 6 5 34 34 H 1.08995 * 109.46916 * 214.70755 * 7 6 5 35 35 H 1.00902 * 111.00456 * 56.04705 * 8 7 6 36 36 H 1.09002 * 109.45419 * 35.03338 * 9 8 7 37 37 H 1.09004 * 109.49614 * 298.55776 * 10 9 8 38 38 H 1.08997 * 109.49851 * 58.65762 * 10 9 8 39 39 H 1.08999 * 109.58767 * 294.84103 * 11 10 9 40 40 H 1.09007 * 109.69895 * 174.48935 * 11 10 9 41 41 H 0.97000 * 120.00177 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.58962 * 293.82375 * 21 12 11 43 43 H 1.09000 * 109.70326 * 173.46527 * 21 12 11 44 44 H 1.09006 * 109.49668 * 301.34280 * 22 9 8 45 45 H 1.09000 * 109.49832 * 61.43727 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2982 2.0764 -0.8938 6 6 5.5724 1.8105 -0.5226 7 6 6.8286 2.2886 -1.2042 8 7 7.3027 3.5164 -0.5517 9 6 8.5290 4.0123 -1.1908 10 6 9.7420 3.2998 -0.5882 11 6 11.0157 3.7943 -1.2811 12 7 11.0676 5.2595 -1.1856 13 6 12.1708 5.8865 -0.6708 14 1 12.7881 5.3816 0.0576 15 6 12.4957 7.1710 -1.0850 16 7 11.9683 7.6600 -2.1873 17 14 13.6812 8.2053 -0.0780 18 1 14.1305 7.4308 1.1067 19 1 14.8577 8.5618 -0.9111 20 1 12.9983 9.4453 0.3705 21 6 9.9136 6.0393 -1.6535 22 6 8.6523 5.5197 -0.9566 23 7 5.4974 1.0446 0.5716 24 7 4.2588 0.8447 0.8558 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9564 -0.8900 32 1 3.9789 2.6724 -1.7359 33 1 6.6171 2.4933 -2.2537 34 1 7.5967 1.5187 -1.1318 35 1 7.4444 3.3693 0.4364 36 1 8.4862 3.8136 -2.2617 37 1 9.7996 3.5184 0.4781 38 1 9.6421 2.2244 -0.7349 39 1 11.0004 3.4966 -2.3295 40 1 11.8902 3.3650 -0.7921 41 1 12.1950 8.5577 -2.4766 42 1 9.8085 5.9248 -2.7324 43 1 10.0582 7.0918 -1.4101 44 1 7.7767 6.0242 -1.3654 45 1 8.7201 5.7173 0.1132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865456583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:59 Heat of formation + Delta-G solvation = 109.676860 kcal Electronic energy + Delta-G solvation = -23109.140806 eV Core-core repulsion = 19778.014815 eV Total energy + Delta-G solvation = -3331.125991 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.35151 -38.10503 -36.48182 -35.18504 -32.98637 -32.41750 -31.13372 -29.94118 -28.99864 -27.47929 -25.82092 -24.08033 -23.03139 -22.07041 -21.94140 -21.28645 -20.73493 -19.17969 -17.55105 -16.76641 -16.67985 -15.63285 -15.22196 -15.03809 -14.84027 -14.50137 -13.96872 -13.75601 -13.64838 -13.39587 -13.14228 -12.91054 -12.73709 -12.50282 -12.36372 -12.06420 -11.95043 -11.63556 -11.42664 -11.32534 -11.01799 -10.88607 -10.71394 -10.67223 -10.23437 -10.16476 -10.13425 -9.93350 -9.67203 -9.49954 -9.22373 -8.44225 -8.01510 -6.61328 -5.73969 -3.15929 1.47914 2.12924 2.44152 3.40567 3.48365 3.50961 3.95760 4.17970 4.26366 4.50605 4.54233 4.60939 4.70848 4.80497 4.88584 4.98137 5.05569 5.33050 5.36942 5.41006 5.46140 5.48370 5.56483 5.62984 5.66464 5.72229 5.88648 5.97321 6.08157 6.16804 6.38913 6.42725 6.56538 6.64943 6.68403 6.77610 6.90768 7.01458 7.37510 7.43797 7.67513 7.74649 7.85306 8.42749 8.50916 9.27100 9.90607 10.47546 11.34606 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.045790 B = 0.002386 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.343149 B =11730.811471 C =11881.070779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.116 3.884 4 N -0.295 5.295 5 C -0.034 4.034 6 C -0.011 4.011 7 C 0.144 3.856 8 N -0.684 5.684 9 C 0.096 3.904 10 C -0.161 4.161 11 C 0.150 3.850 12 N -0.593 5.593 13 C -0.249 4.249 14 H 0.065 0.935 15 C 0.000 4.000 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.171 3.829 22 C -0.124 4.124 23 N -0.265 5.265 24 N -0.089 5.089 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.190 0.810 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.342 0.658 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.052 0.948 41 H 0.252 0.748 42 H 0.017 0.983 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.823 -12.748 0.672 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C -0.005 4.005 4 N -0.089 5.089 5 C -0.186 4.186 6 C -0.150 4.150 7 C 0.013 3.987 8 N -0.314 5.314 9 C -0.013 4.013 10 C -0.202 4.202 11 C 0.022 3.978 12 N -0.316 5.316 13 C -0.379 4.379 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.548 5.548 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.216 1.216 21 C 0.045 3.955 22 C -0.164 4.164 23 N -0.132 5.132 24 N -0.068 5.068 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.207 0.793 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.160 0.840 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.193 -13.064 1.499 26.661 hybrid contribution 0.991 0.654 -0.194 1.203 sum -22.201 -12.410 1.305 25.468 Atomic orbital electron populations 1.21705 0.93850 1.02842 1.02373 1.21824 0.96975 0.94561 1.04231 1.22196 0.72935 1.00120 1.05294 1.47392 1.08996 1.33489 1.19031 1.23406 0.90857 1.04300 1.00000 1.21979 0.95459 1.01031 0.96491 1.20114 0.90043 0.91640 0.96951 1.60813 1.33739 1.29130 1.07714 1.21542 0.85876 0.96156 0.97676 1.22697 0.98310 0.98100 1.01052 1.20819 0.94348 0.86236 0.96358 1.44079 1.14972 0.99335 1.73164 1.19228 1.03677 0.98249 1.16756 0.91764 1.25039 0.98960 0.99655 0.96128 1.70043 1.46988 1.16740 1.21023 0.86238 0.80436 0.80430 0.79782 1.20292 1.21792 1.21577 1.20797 0.82965 0.97436 0.94351 1.22178 0.99698 0.93208 1.01335 1.75069 1.09426 1.15274 1.13455 1.78238 0.96373 1.17622 1.14581 0.91649 0.92054 0.92211 0.91081 0.89981 0.88350 0.87677 0.79316 0.89545 0.93402 0.84038 0.91178 0.92180 0.93429 0.96600 0.92953 0.93749 0.96526 0.89423 0.92778 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.91 37.16 0.37 -0.11 16 2 C -0.14 -0.70 6.06 -26.73 -0.16 -0.87 16 3 C 0.12 0.63 6.46 -4.04 -0.03 0.60 16 4 N -0.30 -2.95 3.44 -61.26 -0.21 -3.17 16 5 C -0.03 -0.35 11.50 -17.05 -0.20 -0.55 16 6 C -0.01 -0.15 6.76 -82.78 -0.56 -0.71 16 7 C 0.14 1.85 6.04 -4.98 -0.03 1.82 16 8 N -0.68 -10.19 6.24 -107.95 -0.67 -10.87 16 9 C 0.10 1.64 2.43 -67.67 -0.16 1.48 16 10 C -0.16 -2.87 5.33 -26.61 -0.14 -3.02 16 11 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 12 N -0.59 -15.09 2.99 -172.31 -0.52 -15.60 16 13 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 14 H 0.06 1.78 7.89 -52.48 -0.41 1.36 16 15 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 16 N -0.90 -26.49 11.19 55.49 0.62 -25.87 16 17 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 22 C -0.12 -2.44 5.69 -26.61 -0.15 -2.59 16 23 N -0.26 -4.01 12.41 33.29 0.41 -3.60 16 24 N -0.09 -1.20 12.91 60.35 0.78 -0.42 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.55 8.12 -51.93 -0.42 0.12 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.30 8.07 -51.93 -0.42 -0.12 16 32 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.09 0.98 8.06 -51.93 -0.42 0.56 16 34 H 0.05 0.64 7.41 -51.93 -0.38 0.26 16 35 H 0.34 5.36 8.47 -39.29 -0.33 5.02 16 36 H 0.07 1.20 7.80 -51.93 -0.40 0.79 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.76 7.42 -51.93 -0.39 0.37 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 2.37 6.07 -51.93 -0.31 2.06 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -32.49 361.61 -8.20 -40.69 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.69 Total: 0.24 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.34 Total: -3.84 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.41 Total: -59.52 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.49 -8.20 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865456583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.368 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds