Wall clock time and date at job start Tue Mar 31 2020 02:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46828 * 2 1 4 4 N 1.46502 * 109.46550 * 179.97438 * 3 2 1 5 5 C 1.35312 * 125.86609 * 125.32886 * 4 3 2 6 6 C 1.35355 * 106.17451 * 180.11644 * 5 4 3 7 7 C 1.50700 * 126.75182 * 179.85260 * 6 5 4 8 8 N 1.46899 * 109.47239 * 94.70734 * 7 6 5 9 9 C 1.46902 * 111.00293 * 179.97438 * 8 7 6 10 10 C 1.53036 * 109.46201 * 275.07429 * 9 8 7 11 11 C 1.53193 * 109.31029 * 178.61139 * 10 9 8 12 12 N 1.46930 * 108.77556 * 54.63602 * 11 10 9 13 13 C 1.36937 * 120.63232 * 126.41527 * 12 11 10 14 14 H 1.08008 * 119.99586 * 331.82015 * 13 12 11 15 15 C 1.38811 * 120.00302 * 151.82566 * 13 12 11 16 16 N 1.31618 * 119.99696 * 343.06358 * 15 13 12 17 17 Si 1.86793 * 120.00115 * 163.06508 * 15 13 12 18 18 H 1.48498 * 109.47166 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46918 * 120.00144 * 17 15 13 20 20 H 1.48497 * 109.47299 * 239.99902 * 17 15 13 21 21 C 1.46924 * 118.73635 * 306.38447 * 12 11 10 22 22 C 1.53039 * 109.46252 * 154.99978 * 9 8 7 23 23 N 1.33770 * 106.49519 * 359.58849 * 6 5 4 24 24 N 1.28635 * 108.88712 * 0.26191 * 23 6 5 25 25 H 1.09000 * 109.46762 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47227 * 300.00136 * 1 2 3 27 27 H 1.08999 * 109.46638 * 60.00002 * 1 2 3 28 28 H 1.08997 * 109.47227 * 239.99864 * 2 1 3 29 29 H 1.08999 * 109.46638 * 119.99998 * 2 1 3 30 30 H 1.08997 * 109.47328 * 59.99926 * 3 2 1 31 31 H 1.08999 * 109.47509 * 299.99464 * 3 2 1 32 32 H 1.08002 * 126.91712 * 359.96530 * 5 4 3 33 33 H 1.09004 * 109.47100 * 334.70962 * 7 6 5 34 34 H 1.08995 * 109.46916 * 214.70755 * 7 6 5 35 35 H 1.00902 * 111.00456 * 56.04705 * 8 7 6 36 36 H 1.09002 * 109.45419 * 35.03338 * 9 8 7 37 37 H 1.09004 * 109.49614 * 298.55776 * 10 9 8 38 38 H 1.08997 * 109.49851 * 58.65762 * 10 9 8 39 39 H 1.08999 * 109.58767 * 294.84103 * 11 10 9 40 40 H 1.09007 * 109.69895 * 174.48935 * 11 10 9 41 41 H 0.97000 * 120.00177 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.58962 * 293.82375 * 21 12 11 43 43 H 1.09000 * 109.70326 * 173.46527 * 21 12 11 44 44 H 1.09006 * 109.49668 * 301.34280 * 22 9 8 45 45 H 1.09000 * 109.49832 * 61.43727 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2982 2.0764 -0.8938 6 6 5.5724 1.8105 -0.5226 7 6 6.8286 2.2886 -1.2042 8 7 7.3027 3.5164 -0.5517 9 6 8.5290 4.0123 -1.1908 10 6 9.7420 3.2998 -0.5882 11 6 11.0157 3.7943 -1.2811 12 7 11.0676 5.2595 -1.1856 13 6 12.1708 5.8865 -0.6708 14 1 12.7881 5.3816 0.0576 15 6 12.4957 7.1710 -1.0850 16 7 11.9683 7.6600 -2.1873 17 14 13.6812 8.2053 -0.0780 18 1 14.1305 7.4308 1.1067 19 1 14.8577 8.5618 -0.9111 20 1 12.9983 9.4453 0.3705 21 6 9.9136 6.0393 -1.6535 22 6 8.6523 5.5197 -0.9566 23 7 5.4974 1.0446 0.5716 24 7 4.2588 0.8447 0.8558 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9564 -0.8900 32 1 3.9789 2.6724 -1.7359 33 1 6.6171 2.4933 -2.2537 34 1 7.5967 1.5187 -1.1318 35 1 7.4444 3.3693 0.4364 36 1 8.4862 3.8136 -2.2617 37 1 9.7996 3.5184 0.4781 38 1 9.6421 2.2244 -0.7349 39 1 11.0004 3.4966 -2.3295 40 1 11.8902 3.3650 -0.7921 41 1 12.1950 8.5577 -2.4766 42 1 9.8085 5.9248 -2.7324 43 1 10.0582 7.0918 -1.4101 44 1 7.7767 6.0242 -1.3654 45 1 8.7201 5.7173 0.1132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865456583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:58 Heat of formation + Delta-G solvation = 87.820240 kcal Electronic energy + Delta-G solvation = -23110.088580 eV Core-core repulsion = 19778.014815 eV Total energy + Delta-G solvation = -3332.073766 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.191 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -44.19884 -39.64561 -37.24204 -36.52591 -34.31087 -33.38818 -32.56156 -31.58465 -30.53867 -28.03022 -27.25610 -25.69639 -23.78728 -23.55705 -22.95450 -22.72088 -21.50701 -20.81373 -18.78938 -18.18693 -17.43382 -16.93620 -16.40767 -16.14672 -15.83131 -15.79076 -15.37339 -15.26433 -14.89223 -14.65804 -14.39481 -13.93103 -13.90131 -13.61237 -13.29426 -13.13734 -12.99486 -12.86996 -12.62049 -12.56025 -12.41472 -12.33084 -11.97409 -11.91422 -11.90071 -11.77542 -11.66778 -11.38622 -11.19870 -10.95865 -10.53763 -10.19290 -9.26854 -8.66186 -7.86379 -5.31299 0.68190 1.45715 1.46978 1.47934 1.53009 1.58533 2.51996 3.21405 3.30364 3.51841 3.61609 3.73308 3.82869 3.92358 4.03658 4.13966 4.18927 4.26167 4.35241 4.41940 4.47523 4.54940 4.58029 4.66748 4.75100 4.79535 4.90072 4.95304 5.03684 5.09029 5.09788 5.13207 5.18572 5.23265 5.29893 5.35707 5.36531 5.54984 5.67051 5.73181 5.77405 6.13437 6.39946 6.42495 7.16927 7.53867 7.88365 8.39672 9.20096 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.045790 B = 0.002386 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.343149 B =11730.811471 C =11881.070779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.106 3.894 4 N -0.286 5.286 5 C -0.018 4.018 6 C -0.035 4.035 7 C 0.148 3.852 8 N -0.678 5.678 9 C 0.109 3.891 10 C -0.147 4.147 11 C 0.145 3.855 12 N -0.611 5.611 13 C -0.262 4.262 14 H 0.062 0.938 15 C -0.051 4.051 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.269 1.269 19 H -0.291 1.291 20 H -0.289 1.289 21 C 0.178 3.822 22 C -0.110 4.110 23 N -0.306 5.306 24 N -0.118 5.118 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.229 0.771 33 H 0.107 0.893 34 H 0.042 0.958 35 H 0.338 0.662 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.018 0.982 40 H 0.049 0.951 41 H 0.250 0.750 42 H 0.000 1.000 43 H 0.052 0.948 44 H 0.069 0.931 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.829 -13.143 0.366 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.013 4.013 4 N -0.080 5.080 5 C -0.170 4.170 6 C -0.174 4.174 7 C 0.018 3.982 8 N -0.307 5.307 9 C 0.000 4.000 10 C -0.188 4.188 11 C 0.019 3.981 12 N -0.335 5.335 13 C -0.393 4.393 14 H 0.080 0.920 15 C -0.247 4.247 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.194 1.194 19 H -0.218 1.218 20 H -0.216 1.216 21 C 0.051 3.949 22 C -0.150 4.150 23 N -0.172 5.172 24 N -0.097 5.097 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.159 0.841 32 H 0.245 0.755 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.019 0.981 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -25.234 -13.506 1.219 28.647 hybrid contribution 1.533 0.722 -0.138 1.700 sum -23.702 -12.784 1.081 26.951 Atomic orbital electron populations 1.21679 0.92150 1.03123 1.03320 1.21761 0.98302 0.94196 1.02845 1.22661 0.70441 1.00691 1.07549 1.47771 1.10400 1.31927 1.17878 1.23963 0.89896 1.03059 1.00117 1.22091 0.96572 1.01974 0.96758 1.20138 0.90022 0.90293 0.97764 1.60726 1.31976 1.30600 1.07411 1.21285 0.86513 0.94112 0.98128 1.22538 0.96760 0.99556 0.99905 1.20965 0.96198 0.84080 0.96848 1.44340 1.14823 1.01058 1.73282 1.19518 1.04273 0.98806 1.16663 0.91996 1.25783 1.00997 1.00735 0.97140 1.70182 1.48513 1.16817 1.22423 0.85232 0.78266 0.78631 0.78468 1.19373 1.21775 1.21559 1.20604 0.84709 0.95780 0.93765 1.21934 0.97736 0.95395 0.99893 1.75007 1.10556 1.16731 1.14923 1.78161 0.96381 1.19132 1.16036 0.91770 0.91562 0.90769 0.91736 0.92158 0.87369 0.84149 0.75490 0.87452 0.94029 0.84510 0.90485 0.93169 0.90910 0.96404 0.93279 0.94067 0.98144 0.92925 0.91269 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 9.91 71.98 0.71 0.11 16 2 C -0.13 -1.14 6.06 30.60 0.19 -0.96 16 3 C 0.11 0.86 6.46 86.38 0.56 1.41 16 4 N -0.29 -5.09 3.44 -347.73 -1.20 -6.29 16 5 C -0.02 -0.31 11.50 83.49 0.96 0.65 16 6 C -0.03 -0.84 6.76 41.60 0.28 -0.56 16 7 C 0.15 3.46 6.04 85.56 0.52 3.98 16 8 N -0.68 -18.76 6.24 -495.44 -3.09 -21.85 16 9 C 0.11 3.53 2.43 44.94 0.11 3.64 16 10 C -0.15 -5.05 5.33 30.67 0.16 -4.89 16 11 C 0.15 6.16 6.52 86.36 0.56 6.72 16 12 N -0.61 -31.46 2.99 -699.08 -2.09 -33.55 16 13 C -0.26 -14.85 9.58 84.03 0.81 -14.04 16 14 H 0.06 3.46 7.89 -2.91 -0.02 3.43 16 15 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 16 N -0.93 -55.92 11.19 21.65 0.24 -55.68 16 17 Si 0.97 45.84 29.59 68.60 2.03 47.87 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 21 C 0.18 8.69 5.30 86.36 0.46 9.15 16 22 C -0.11 -4.23 5.69 30.67 0.17 -4.06 16 23 N -0.31 -9.06 12.41 -48.60 -0.60 -9.67 16 24 N -0.12 -3.11 12.91 37.02 0.48 -2.63 16 25 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 30 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.14 0.17 8.07 -2.39 -0.02 0.15 16 32 H 0.23 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.11 2.05 8.06 -2.38 -0.02 2.03 16 34 H 0.04 1.03 7.41 -2.39 -0.02 1.01 16 35 H 0.34 10.07 8.47 -89.69 -0.76 9.31 16 36 H 0.08 2.44 7.80 -2.39 -0.02 2.42 16 37 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.07 2.16 7.42 -2.39 -0.02 2.14 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 2.07 7.93 -2.38 -0.02 2.05 16 41 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 43 H 0.05 2.93 6.07 -2.39 -0.01 2.92 16 44 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.10 361.61 1.88 -70.22 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.20 Total: 12.92 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 5.91 Total: -1.34 kcal Atomic # 7 Polarization: -123.41 SS G_CDS: -6.26 Total: -129.67 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.10 1.88 -70.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865456583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.045 kcal (2) G-P(sol) polarization free energy of solvation -72.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds