Wall clock time and date at job start Tue Mar 31 2020 03:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00336 * 2 1 4 4 H 1.48495 * 109.47376 * 264.38466 * 3 2 1 5 5 H 1.48505 * 109.47056 * 24.38562 * 3 2 1 6 6 H 1.48503 * 109.47174 * 144.38402 * 3 2 1 7 7 C 1.38817 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99845 * 333.91444 * 7 2 1 9 9 N 1.36933 * 119.99625 * 153.91188 * 7 2 1 10 10 C 1.46959 * 120.59870 * 321.54855 * 9 7 2 11 11 C 1.53368 * 108.63607 * 235.20897 * 10 9 7 12 12 N 1.46961 * 108.63464 * 310.57094 * 11 10 9 13 13 C 1.34780 * 120.59832 * 235.20526 * 12 11 10 14 14 O 1.21606 * 120.00189 * 166.20857 * 13 12 11 15 15 C 1.47285 * 119.99896 * 345.93960 * 13 12 11 16 16 C 1.36703 * 125.14270 * 171.16113 * 15 13 12 17 17 C 1.36643 * 114.78952 * 179.84718 * 16 15 13 18 18 C 1.37031 * 114.68591 * 0.43644 * 17 16 15 19 19 C 1.46281 * 125.18560 * 179.74155 * 18 17 16 20 20 O 1.21353 * 119.99751 * 359.97438 * 19 18 17 21 21 S 1.75831 * 125.13725 * 351.46103 * 15 13 12 22 22 C 1.46963 * 118.80868 * 55.48089 * 12 11 10 23 23 C 1.46968 * 120.59083 * 141.52854 * 9 7 2 24 24 H 0.97001 * 119.99440 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.61448 * 115.45794 * 10 9 7 26 26 H 1.09005 * 109.75119 * 355.03570 * 10 9 7 27 27 H 1.09008 * 109.61010 * 190.83277 * 11 10 9 28 28 H 1.08995 * 109.61323 * 70.31834 * 11 10 9 29 29 H 1.08001 * 122.60756 * 0.02562 * 16 15 13 30 30 H 1.08001 * 122.65828 * 180.19731 * 17 16 15 31 31 H 1.07992 * 120.00175 * 179.97438 * 19 18 17 32 32 H 1.08997 * 109.61073 * 64.26791 * 22 12 11 33 33 H 1.09010 * 109.60700 * 184.77687 * 22 12 11 34 34 H 1.08995 * 109.60923 * 244.53956 * 23 9 7 35 35 H 1.08996 * 109.60985 * 5.04723 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6165 1.9778 -1.3933 5 1 1.3935 2.6840 0.5781 6 1 3.4835 1.4772 0.8153 7 6 2.0102 -1.2023 -0.0005 8 1 1.5526 -2.0900 0.4103 9 7 3.2749 -1.2624 -0.5221 10 6 3.6225 -0.5024 -1.7309 11 6 4.1890 -1.4734 -2.7743 12 7 5.2232 -2.2988 -2.1349 13 6 6.4680 -2.3582 -2.6482 14 8 7.3751 -2.8304 -1.9902 15 6 6.7284 -1.8566 -4.0083 16 6 7.9666 -1.7061 -4.5679 17 6 7.9626 -1.2256 -5.8470 18 6 6.7177 -0.9642 -6.3563 19 6 6.4476 -0.4405 -7.6952 20 8 7.3672 -0.2029 -8.4506 21 16 5.4940 -1.3537 -5.1550 22 6 4.8740 -3.0633 -0.9293 23 6 4.3091 -2.0880 0.1173 24 1 -0.4849 0.8401 0.0004 25 1 4.3720 0.2504 -1.4869 26 1 2.7319 -0.0162 -2.1292 27 1 4.6279 -0.9101 -3.5979 28 1 3.3906 -2.1133 -3.1500 29 1 8.8770 -1.9509 -4.0410 30 1 8.8692 -1.0611 -6.4105 31 1 5.4300 -0.2653 -8.0114 32 1 4.1233 -3.8138 -1.1766 33 1 5.7656 -3.5504 -0.5341 34 1 5.1074 -1.4480 0.4931 35 1 3.8702 -2.6511 0.9409 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865984197.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:48 Heat of formation + Delta-G solvation = 10.924656 kcal Electronic energy + Delta-G solvation = -21130.212420 eV Core-core repulsion = 17835.879480 eV Total energy + Delta-G solvation = -3294.332940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.05441 -39.39859 -37.59055 -36.75176 -34.17533 -31.91249 -31.18381 -30.14592 -27.71629 -26.18585 -23.75663 -23.55794 -22.64037 -21.53624 -19.91581 -18.72897 -18.25043 -17.01800 -16.54263 -16.29496 -15.58252 -15.39509 -15.05880 -14.89588 -14.57244 -14.40058 -14.05139 -13.90440 -13.31830 -13.26494 -12.77867 -12.65918 -12.52579 -12.30809 -12.05138 -11.43880 -10.94084 -10.90289 -10.61592 -10.52399 -10.40874 -10.28935 -9.91864 -9.80920 -9.12354 -8.85285 -8.72347 -8.46543 -6.99178 -6.18730 -3.59937 -0.23826 1.13004 1.52147 1.64877 2.55963 2.95001 3.10235 3.20789 3.37834 3.44114 3.91097 4.36505 4.38900 4.66831 4.91680 4.99971 5.10137 5.15172 5.22336 5.38418 5.54025 5.61455 5.69800 5.80807 5.85079 5.96009 6.02294 6.06004 6.34072 6.38652 6.59549 6.69745 7.00437 7.42172 7.83370 8.07027 8.19712 8.75385 9.51093 9.93054 10.96381 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.019530 B = 0.004852 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.357981 B = 5769.827090 C = 6690.123222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.044 3.956 3 Si 0.866 3.134 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.277 4.277 8 H 0.082 0.918 9 N -0.599 5.599 10 C 0.129 3.871 11 C 0.086 3.914 12 N -0.598 5.598 13 C 0.582 3.418 14 O -0.531 6.531 15 C -0.222 4.222 16 C -0.081 4.081 17 C -0.068 4.068 18 C -0.326 4.326 19 C 0.411 3.589 20 O -0.456 6.456 21 S 0.249 5.751 22 C 0.098 3.902 23 C 0.129 3.871 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.156 0.844 30 H 0.150 0.850 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.030 0.970 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.139 -2.786 -11.417 15.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.159 4.159 3 Si 0.694 3.306 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.405 4.405 8 H 0.099 0.901 9 N -0.323 5.323 10 C 0.001 3.999 11 C -0.041 4.041 12 N -0.331 5.331 13 C 0.369 3.631 14 O -0.409 6.409 15 C -0.344 4.344 16 C -0.114 4.114 17 C -0.101 4.101 18 C -0.444 4.444 19 C 0.269 3.731 20 O -0.329 6.329 21 S 0.520 5.480 22 C -0.025 4.025 23 C 0.003 3.997 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.173 0.827 30 H 0.168 0.832 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.281 -2.747 -11.423 14.972 hybrid contribution 1.851 1.036 0.046 2.122 sum 11.132 -1.711 -11.377 16.008 Atomic orbital electron populations 1.69916 1.06075 1.27143 1.49725 1.25538 0.95023 0.97684 0.97609 0.87092 0.80387 0.84874 0.78257 1.20861 1.22335 1.19801 1.18766 0.88147 0.94974 1.38646 0.90052 1.44243 1.08988 1.53979 1.25097 1.21634 0.98923 0.92333 0.86961 1.22876 0.90697 0.94917 0.95600 1.47886 1.09717 1.46466 1.29001 1.17167 0.82857 0.79128 0.83995 1.90778 1.43121 1.47011 1.60035 1.25154 0.98054 1.11589 0.99638 1.20528 0.97632 0.98649 0.94578 1.20668 0.97740 0.97083 0.94594 1.26620 1.00262 1.14013 1.03548 1.23121 0.94567 0.72232 0.83211 1.90563 1.49837 1.39066 1.53462 1.84672 1.06019 1.57096 1.00234 1.22411 1.00532 0.94469 0.85055 1.21520 0.91630 0.92843 0.93718 0.92413 0.95384 0.89408 0.91475 0.89637 0.82683 0.83246 0.87169 0.90900 0.89337 0.95177 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 13.97 55.49 0.78 -24.50 16 2 C 0.04 1.17 5.03 -17.43 -0.09 1.08 16 3 Si 0.87 20.68 25.48 -169.99 -4.33 16.35 16 4 H -0.28 -6.34 6.68 56.52 0.38 -5.96 16 5 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.28 -7.13 9.83 -15.06 -0.15 -7.28 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 9 N -0.60 -13.06 2.51 -171.77 -0.43 -13.49 16 10 C 0.13 2.50 4.49 -3.60 -0.02 2.48 16 11 C 0.09 1.33 5.57 -3.60 -0.02 1.31 16 12 N -0.60 -9.66 2.94 -173.54 -0.51 -10.17 16 13 C 0.58 9.39 7.60 -12.58 -0.10 9.29 16 14 O -0.53 -9.84 16.33 5.27 0.09 -9.76 16 15 C -0.22 -2.96 6.20 -36.46 -0.23 -3.19 16 16 C -0.08 -0.96 9.89 -40.71 -0.40 -1.37 16 17 C -0.07 -0.73 9.89 -40.60 -0.40 -1.13 16 18 C -0.33 -3.35 6.44 -36.79 -0.24 -3.59 16 19 C 0.41 3.81 11.71 33.96 0.40 4.21 16 20 O -0.46 -5.76 17.63 5.49 0.10 -5.66 16 21 S 0.25 2.63 18.66 -107.50 -2.01 0.62 16 22 C 0.10 1.58 6.62 -3.37 -0.02 1.56 16 23 C 0.13 2.40 6.69 -3.36 -0.02 2.38 16 24 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.03 0.56 7.52 -51.93 -0.39 0.17 16 26 H 0.09 1.80 6.05 -51.93 -0.31 1.49 16 27 H 0.07 0.91 3.34 -19.05 -0.06 0.84 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.16 1.72 8.05 -52.49 -0.42 1.30 16 30 H 0.15 1.42 8.04 -52.49 -0.42 0.99 16 31 H 0.11 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.37 7.04 -51.92 -0.37 1.01 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.42 7.93 -51.93 -0.41 1.01 16 LS Contribution 305.19 15.07 4.60 4.60 Total: -1.00 -31.25 305.19 -6.67 -37.92 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -3.66 Total: -1.67 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.28 Total: 5.76 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.17 Total: -48.17 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.18 Total: -15.42 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.33 Total: 16.35 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.01 Total: 0.62 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.25 -6.67 -37.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865984197.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.844 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds