Wall clock time and date at job start Tue Mar 31 2020 04:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46500 * 109.47007 * 239.99624 * 2 1 3 13 13 C 1.46505 * 120.00155 * 299.99972 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00096 * 12 2 1 15 15 O 1.42095 * 106.40444 * 203.53750 * 14 12 2 16 16 O 1.42097 * 106.40082 * 336.46142 * 14 12 2 17 17 N 1.65604 * 107.21800 * 89.99874 * 14 12 2 18 18 C 1.46504 * 119.99990 * 65.00135 * 17 14 12 19 19 C 1.52999 * 109.47129 * 164.99987 * 18 17 14 20 20 H 1.09003 * 110.30847 * 57.81742 * 19 18 17 21 21 C 1.54172 * 110.34589 * 180.02562 * 19 18 17 22 22 O 1.44289 * 104.94281 * 118.86608 * 21 19 18 23 23 C 1.44407 * 104.60654 * 23.64138 * 22 21 19 24 24 O 1.44292 * 110.34529 * 295.51985 * 19 18 17 25 25 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 27 27 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 28 28 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 30 30 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 31 31 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 32 32 H 0.97000 * 120.00229 * 245.00178 * 17 14 12 33 33 H 1.09003 * 109.46974 * 285.00143 * 18 17 14 34 34 H 1.08995 * 109.46966 * 45.00035 * 18 17 14 35 35 H 1.08999 * 110.34500 * 237.73067 * 21 19 18 36 36 H 1.08996 * 110.34738 * 359.97438 * 21 19 18 37 37 H 1.08990 * 110.40514 * 79.45899 * 23 22 21 38 38 H 1.09002 * 110.39757 * 201.75829 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8299 2.6033 8 14 2.3225 -1.1193 4.0080 9 1 3.1474 -2.2861 3.6039 10 1 3.1473 -0.1855 4.8160 11 1 1.1678 -1.5863 4.8166 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9703 0.1140 -2.2863 15 8 2.8227 -0.5648 -3.5258 16 8 2.6904 1.4971 -2.1194 17 7 4.5437 -0.1044 -1.8180 18 6 5.1357 -1.4443 -1.8414 19 6 6.6577 -1.3314 -1.7334 20 1 6.9340 -0.8019 -0.8216 21 6 7.3021 -2.7318 -1.7568 22 8 8.1494 -2.7320 -2.9248 23 6 8.4365 -1.3376 -3.1666 24 8 7.1940 -0.6562 -2.8904 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7082 1.1611 3.4843 29 1 0.7375 -2.1445 -1.9992 30 1 2.4628 -2.5821 -1.9862 31 1 1.5295 -2.5969 -0.4706 32 1 5.0734 0.6548 -1.5282 33 1 4.7539 -2.0249 -1.0016 34 1 4.8736 -1.9410 -2.7756 35 1 7.8968 -2.8904 -0.8572 36 1 6.5346 -3.5007 -1.8448 37 1 9.2195 -0.9885 -2.4936 38 1 8.7327 -1.1852 -4.2045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867398507.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:21 Heat of formation + Delta-G solvation = -188.939971 kcal Electronic energy + Delta-G solvation = -23162.062994 eV Core-core repulsion = 19551.754354 eV Total energy + Delta-G solvation = -3610.308640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.30556 -38.34117 -37.87786 -36.90084 -36.71884 -35.55280 -34.47907 -31.54049 -30.90813 -27.23867 -27.00045 -26.57352 -25.70820 -22.93586 -22.56427 -20.35327 -18.83878 -18.53306 -18.31541 -18.01506 -17.70970 -17.15361 -16.94145 -16.57098 -16.22149 -15.71320 -15.10478 -14.87329 -14.55545 -14.45499 -14.26622 -13.72331 -13.56932 -13.47691 -13.36039 -13.26404 -13.19234 -13.11804 -12.96229 -12.72829 -12.64895 -12.31319 -12.14565 -12.10953 -11.86940 -11.24533 -11.14317 -10.78152 -10.49558 -10.46203 -9.65164 -8.05894 -6.20879 -0.29417 1.47811 1.50733 1.60393 2.01394 2.48017 2.52297 2.70773 3.09675 3.23131 3.35599 3.60152 3.62741 3.96338 4.06851 4.13687 4.36624 4.47006 4.57677 4.63918 4.71238 4.73729 4.82294 4.83621 4.98872 5.02724 5.10040 5.17684 5.29256 5.63604 5.69130 5.86191 5.87758 6.06306 6.17347 6.31528 6.89037 7.48976 8.99078 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.005680 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.571611 B = 4928.406745 C = 6018.793389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.271 3.729 3 H 0.024 0.976 4 C -0.525 4.525 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.257 1.257 10 H -0.288 1.288 11 H -0.287 1.287 12 N -0.995 5.995 13 C 0.097 3.903 14 S 2.800 3.200 15 O -1.009 7.009 16 O -1.020 7.020 17 N -1.116 6.116 18 C 0.116 3.884 19 C 0.041 3.959 20 H 0.109 0.891 21 C 0.023 3.977 22 O -0.402 6.402 23 C 0.192 3.808 24 O -0.397 6.397 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.016 0.984 28 H 0.262 0.738 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.420 0.580 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.861 -8.263 -5.717 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.167 3.833 3 H 0.042 0.958 4 C -0.564 4.564 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.787 3.213 9 H -0.181 1.181 10 H -0.215 1.215 11 H -0.213 1.213 12 N -0.837 5.837 13 C -0.048 4.048 14 S 2.809 3.191 15 O -0.992 6.992 16 O -1.004 7.004 17 N -0.878 5.878 18 C -0.010 4.010 19 C -0.018 4.018 20 H 0.127 0.873 21 C -0.054 4.054 22 O -0.323 6.323 23 C 0.079 3.921 24 O -0.318 6.318 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.035 0.965 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.255 0.745 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.354 -7.841 -6.679 16.084 hybrid contribution 0.311 0.280 1.482 1.540 sum 12.664 -7.561 -5.197 15.638 Atomic orbital electron populations 1.21949 0.98073 1.00089 0.99804 1.18426 0.91852 0.91503 0.81526 0.95814 1.21669 1.31504 1.12934 0.90286 0.90585 1.25733 0.95253 0.95635 1.02005 1.70039 1.37583 1.24227 1.24178 0.85464 0.77932 0.78709 0.79187 1.18060 1.21454 1.21341 1.57591 1.65060 1.22531 1.38506 1.21445 1.00527 0.80428 1.02435 1.01081 0.73063 0.71969 0.72978 1.93520 1.86580 1.76346 1.42781 1.93535 1.84631 1.34993 1.87274 1.55583 1.30811 1.16058 1.85325 1.21669 0.92401 0.83351 1.03556 1.23949 0.93496 0.93963 0.90410 0.87319 1.24204 0.94805 0.96671 0.89701 1.89222 1.68844 1.26561 1.47648 1.25285 0.87141 0.76032 1.03670 1.89312 1.37926 1.56688 1.47895 0.93619 0.91262 0.96487 0.92886 0.93262 0.90505 0.89996 0.74476 0.88125 0.90230 0.87727 0.86866 0.89649 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.62 8.97 71.98 0.65 -5.97 16 2 C 0.27 12.99 2.62 44.25 0.12 13.10 16 3 H 0.02 1.31 6.91 -2.39 -0.02 1.30 16 4 C -0.52 -25.39 7.99 25.60 0.20 -25.19 16 5 H 0.08 3.41 7.32 -2.91 -0.02 3.39 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -50.29 11.32 21.45 0.24 -50.05 16 8 Si 0.96 39.66 29.54 68.60 2.03 41.68 16 9 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 10 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 12 N -0.99 -39.29 3.12 -520.43 -1.62 -40.91 16 13 C 0.10 3.12 9.28 127.77 1.19 4.31 16 14 S 2.80 108.56 6.09 -56.49 -0.34 108.22 16 15 O -1.01 -40.94 16.68 -128.00 -2.14 -43.07 16 16 O -1.02 -47.72 16.70 -128.00 -2.14 -49.86 16 17 N -1.12 -34.04 6.02 -187.49 -1.13 -35.17 16 18 C 0.12 2.80 5.77 86.38 0.50 3.29 16 19 C 0.04 0.81 3.64 30.99 0.11 0.92 16 20 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 21 C 0.02 0.37 7.55 72.38 0.55 0.91 16 22 O -0.40 -8.10 11.78 -125.85 -1.48 -9.58 16 23 C 0.19 3.34 8.53 113.37 0.97 4.30 16 24 O -0.40 -9.40 11.43 -125.85 -1.44 -10.84 16 25 H 0.04 1.98 7.67 -2.39 -0.02 1.97 16 26 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 2.02 7.79 -2.39 -0.02 2.00 16 31 H 0.08 2.61 7.01 -2.39 -0.02 2.59 16 32 H 0.42 11.96 8.65 -96.74 -0.84 11.12 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 1.99 7.75 -2.39 -0.02 1.97 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 1.53 7.71 -2.39 -0.02 1.51 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -68.86 325.85 -3.06 -71.92 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.23 Total: 20.86 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 4.73 Total: -3.20 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -2.51 Total: -126.13 kcal Atomic # 8 Polarization: -106.16 SS G_CDS: -7.19 Total: -113.35 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.68 kcal Atomic # 16 Polarization: 108.56 SS G_CDS: -0.34 Total: 108.22 kcal Total: -68.86 -3.06 -71.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867398507.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.021 kcal (2) G-P(sol) polarization free energy of solvation -68.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds