Wall clock time and date at job start Tue Mar 31 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30609 * 1 3 3 Si 1.86802 * 120.00419 * 2 1 4 4 H 1.48503 * 109.46995 * 85.01706 * 3 2 1 5 5 H 1.48502 * 109.47255 * 205.01766 * 3 2 1 6 6 H 1.48501 * 109.46893 * 325.01761 * 3 2 1 7 7 C 1.40342 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00431 * 190.09279 * 7 2 1 9 9 C 1.40514 * 119.99899 * 10.09033 * 7 2 1 10 10 C 1.39677 * 123.35851 * 25.15026 * 9 7 2 11 11 C 1.32874 * 115.27287 * 179.76194 * 10 9 7 12 12 S 1.75649 * 110.86992 * 0.49139 * 11 10 9 13 13 C 1.39698 * 123.36051 * 205.44730 * 9 7 2 14 14 C 1.41749 * 125.45658 * 359.97438 * 13 9 7 15 15 O 1.21683 * 120.00322 * 0.02562 * 14 13 9 16 16 O 1.35007 * 119.99469 * 180.02562 * 14 13 9 17 17 C 1.42904 * 116.99241 * 180.02562 * 16 14 13 18 18 C 1.53008 * 109.46619 * 180.02562 * 17 16 14 19 19 N 1.46499 * 109.47049 * 179.97438 * 18 17 16 20 20 C 1.34594 * 126.43924 * 125.00278 * 19 18 17 21 21 N 1.31071 * 106.67895 * 180.02562 * 20 19 18 22 22 N 1.28837 * 107.99082 * 359.97438 * 21 20 19 23 23 N 1.28736 * 109.40134 * 359.73820 * 22 21 20 24 24 H 0.97006 * 120.00021 * 359.97438 * 1 2 3 25 25 H 1.08001 * 122.36120 * 0.02562 * 10 9 7 26 26 H 1.07997 * 124.56535 * 180.22252 * 11 10 9 27 27 H 1.09002 * 109.47041 * 299.99092 * 17 16 14 28 28 H 1.08996 * 109.47779 * 59.99771 * 17 16 14 29 29 H 1.08995 * 109.46767 * 299.99655 * 18 17 16 30 30 H 1.09005 * 109.47071 * 59.99622 * 18 17 16 31 31 H 1.07998 * 126.66137 * 359.95237 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.3824 2.1071 1.3948 5 1 3.5865 1.4119 -0.5921 6 1 1.4943 2.6199 -0.8027 7 6 2.0078 -1.2154 -0.0005 8 1 3.0753 -1.2228 0.1634 9 6 1.3215 -2.4228 -0.2143 10 6 0.1142 -2.5069 -0.9115 11 6 -0.3925 -3.7302 -1.0229 12 16 0.6351 -4.9084 -0.2224 13 6 1.7757 -3.6579 0.2545 14 6 2.9655 -3.8693 0.9953 15 8 3.6854 -2.9280 1.2719 16 8 3.3000 -5.1150 1.3941 17 6 4.5124 -5.2544 2.1375 18 6 4.7230 -6.7264 2.4982 19 7 5.9663 -6.8695 3.2598 20 6 6.1002 -7.4390 4.4719 21 7 7.3698 -7.3579 4.7875 22 7 7.9836 -6.7698 3.8194 23 7 7.1396 -6.4785 2.8920 24 1 -0.4850 0.8401 0.0004 25 1 -0.3710 -1.6395 -1.3341 26 1 -1.3144 -3.9674 -1.5329 27 1 5.3506 -4.9050 1.5345 28 1 4.4494 -4.6617 3.0501 29 1 3.8850 -7.0762 3.1010 30 1 4.7862 -7.3187 1.5853 31 1 5.3140 -7.8767 5.0692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884609091.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:41 Heat of formation + Delta-G solvation = 57.092278 kcal Electronic energy + Delta-G solvation = -20060.005761 eV Core-core repulsion = 16664.134456 eV Total energy + Delta-G solvation = -3395.871305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 294.057 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.29875 -39.45871 -37.11119 -36.18895 -35.00868 -33.38761 -32.59285 -30.59541 -29.23404 -27.01219 -24.92980 -23.94250 -22.89913 -22.07024 -20.75725 -18.97126 -18.24444 -17.40978 -17.16423 -16.47637 -16.07581 -15.94571 -15.66924 -15.17384 -14.27521 -14.12165 -13.86815 -13.17719 -12.67617 -12.65086 -12.38227 -12.17347 -11.96808 -11.71103 -11.55145 -11.34149 -11.29468 -11.16466 -10.97476 -10.57206 -10.47067 -10.43669 -9.99705 -9.83010 -9.43756 -9.02704 -7.69797 -7.38045 -7.31014 -4.82692 1.10007 1.71660 1.78361 2.12259 2.81333 2.85841 2.94053 3.01855 3.46941 3.56164 3.58418 3.66802 4.03993 4.06335 4.13334 4.59318 4.71146 4.90711 5.00512 5.21630 5.41567 5.59322 5.68548 5.92869 5.95955 6.51709 6.61432 6.88827 7.02427 7.27135 7.35868 7.57664 8.08372 8.28759 8.40258 8.46442 9.11875 9.57172 Molecular weight = 294.06amu Principal moments of inertia in cm(-1) A = 0.018929 B = 0.003891 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.819675 B = 7194.329896 C = 8489.775151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.064 3.936 3 Si 0.929 3.071 4 H -0.262 1.262 5 H -0.252 1.252 6 H -0.270 1.270 7 C -0.357 4.357 8 H 0.114 0.886 9 C 0.141 3.859 10 C -0.108 4.108 11 C -0.197 4.197 12 S -0.016 6.016 13 C -0.414 4.414 14 C 0.535 3.465 15 O -0.545 6.545 16 O -0.367 6.367 17 C 0.062 3.938 18 C 0.117 3.883 19 N -0.303 5.303 20 C 0.162 3.838 21 N -0.311 5.311 22 N -0.078 5.078 23 N -0.086 5.086 24 H 0.293 0.707 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 -7.721 2.522 8.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.160 4.160 3 Si 0.751 3.249 4 H -0.187 1.187 5 H -0.175 1.175 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.132 0.868 9 C 0.130 3.870 10 C -0.140 4.140 11 C -0.332 4.332 12 S 0.239 5.761 13 C -0.530 4.530 14 C 0.392 3.608 15 O -0.441 6.441 16 O -0.286 6.286 17 C -0.015 4.015 18 C -0.004 4.004 19 N -0.106 5.106 20 C -0.136 4.136 21 N -0.159 5.159 22 N -0.073 5.073 23 N -0.073 5.073 24 H 0.105 0.895 25 H 0.163 0.837 26 H 0.159 0.841 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.173 -8.516 2.585 8.976 hybrid contribution -0.872 1.969 -0.005 2.154 sum 0.301 -6.546 2.580 7.043 Atomic orbital electron populations 1.69654 1.08233 1.31070 1.29330 1.26484 0.95054 1.02978 0.91481 0.85915 0.80802 0.78278 0.79887 1.18703 1.17525 1.19492 1.20278 0.98005 0.88995 1.31439 0.86799 1.16913 0.90285 0.91520 0.88279 1.20595 0.96612 0.96670 1.00160 1.25254 1.03709 0.97225 1.06999 1.83149 1.19210 1.12656 1.61037 1.20885 1.05644 0.96668 1.29830 1.18230 0.85355 0.78814 0.78420 1.90749 1.53198 1.41621 1.58534 1.86121 1.39393 1.35247 1.67846 1.22239 0.88807 0.92874 0.97542 1.22057 0.80425 0.99703 0.98265 1.48626 1.09163 1.37874 1.14908 1.27775 0.98175 1.00285 0.87383 1.74993 1.02839 1.16716 1.21368 1.78651 1.21874 1.11256 0.95495 1.78966 0.88209 1.17705 1.22389 0.89512 0.83740 0.84105 0.90456 0.91515 0.85678 0.86437 0.74765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.01 10.87 55.57 0.60 -16.41 16 2 C 0.06 1.45 5.37 -17.28 -0.09 1.36 16 3 Si 0.93 17.23 29.57 -169.99 -5.03 12.21 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 5 H -0.25 -4.77 7.11 56.52 0.40 -4.36 16 6 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 7 C -0.36 -9.04 8.40 -37.93 -0.32 -9.36 16 8 H 0.11 3.02 6.07 -52.48 -0.32 2.70 16 9 C 0.14 3.55 5.53 -107.96 -0.60 2.96 16 10 C -0.11 -2.47 8.81 -40.89 -0.36 -2.83 16 11 C -0.20 -4.02 11.11 28.88 0.32 -3.70 16 12 S -0.02 -0.34 23.02 -107.50 -2.47 -2.81 16 13 C -0.41 -10.14 6.36 -37.70 -0.24 -10.38 16 14 C 0.53 12.76 7.73 32.07 0.25 13.01 16 15 O -0.54 -14.18 14.11 -19.40 -0.27 -14.46 16 16 O -0.37 -7.06 9.87 -41.34 -0.41 -7.47 16 17 C 0.06 0.95 5.52 37.16 0.21 1.16 16 18 C 0.12 1.16 6.85 -4.04 -0.03 1.13 16 19 N -0.30 -3.45 3.44 -62.55 -0.22 -3.66 16 20 C 0.16 1.55 12.79 -90.40 -1.16 0.40 16 21 N -0.31 -4.19 12.36 29.59 0.37 -3.83 16 22 N -0.08 -1.23 13.43 60.35 0.81 -0.42 16 23 N -0.09 -1.28 13.08 60.35 0.79 -0.49 16 24 H 0.29 5.81 8.29 -40.82 -0.34 5.47 16 25 H 0.15 3.25 6.37 -52.49 -0.33 2.92 16 26 H 0.14 2.38 8.06 -52.49 -0.42 1.96 16 27 H 0.08 1.30 8.12 -51.93 -0.42 0.87 16 28 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 29 H 0.13 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.24 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 298.85 15.07 4.50 4.50 Total: -1.00 -30.56 298.85 -5.66 -36.22 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -2.32 Total: 2.87 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -2.02 Total: -6.26 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 2.35 Total: -24.81 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.68 Total: -21.93 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.21 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.47 Total: -2.81 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.56 -5.66 -36.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884609091.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.314 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds