Wall clock time and date at job start Tue Mar 31 2020 03:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47197 * 70.61813 * 3 2 1 5 5 C 1.36938 * 120.00036 * 264.23587 * 4 3 2 6 6 H 1.07990 * 120.00147 * 201.36213 * 5 4 3 7 7 C 1.38817 * 119.99836 * 21.36532 * 5 4 3 8 8 N 1.31621 * 119.99789 * 13.60831 * 7 5 4 9 9 Si 1.86791 * 119.99907 * 193.61221 * 7 5 4 10 10 H 1.48505 * 109.47405 * 84.97900 * 9 7 5 11 11 H 1.48496 * 109.47405 * 204.97843 * 9 7 5 12 12 H 1.48505 * 109.47417 * 324.97922 * 9 7 5 13 13 C 1.46503 * 119.99962 * 84.23723 * 4 3 2 14 14 C 1.50699 * 109.47020 * 269.99864 * 13 4 3 15 15 C 1.38259 * 120.00031 * 269.97661 * 14 13 4 16 16 C 1.38211 * 119.99732 * 180.02562 * 15 14 13 17 17 C 1.38260 * 120.00441 * 359.95656 * 16 15 14 18 18 C 1.38210 * 119.99507 * 0.13527 * 17 16 15 19 19 S 1.76205 * 119.99752 * 179.97438 * 18 17 16 20 20 N 1.65597 * 107.21852 * 269.91044 * 19 18 17 21 21 O 1.42098 * 106.40173 * 23.45014 * 19 18 17 22 22 O 1.42100 * 106.39949 * 156.36857 * 19 18 17 23 23 C 1.38217 * 119.99938 * 90.00367 * 14 13 4 24 24 H 4.40641 * 5.51440 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.47387 * 310.61321 * 3 2 1 26 26 H 1.09007 * 109.46783 * 190.61612 * 3 2 1 27 27 H 0.97006 * 119.99620 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47105 * 150.00066 * 13 4 3 29 29 H 1.09000 * 109.47313 * 30.00025 * 13 4 3 30 30 H 1.07998 * 120.00030 * 359.97438 * 15 14 13 31 31 H 1.07998 * 119.99989 * 179.97438 * 16 15 14 32 32 H 1.07997 * 120.00173 * 179.97438 * 17 16 15 33 33 H 0.97001 * 120.00251 * 359.97438 * 20 19 18 34 34 H 0.97000 * 119.99669 * 179.97438 * 20 19 18 35 35 H 1.08000 * 119.99593 * 359.69496 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.4575 -1.3029 5 6 3.4757 -1.7714 -1.4828 6 1 4.1398 -2.0517 -2.2869 7 6 2.9676 -2.7432 -0.6316 8 7 1.9634 -2.4566 0.1694 9 14 3.7094 -4.4575 -0.6230 10 1 4.8870 -4.4829 0.2814 11 1 2.6968 -5.4327 -0.1446 12 1 4.1342 -4.8201 -1.9991 13 6 3.2582 0.4901 -2.4134 14 6 1.9679 0.5234 -3.1913 15 6 1.7790 -0.3405 -4.2541 16 6 0.5959 -0.3095 -4.9679 17 6 -0.3991 0.5847 -4.6186 18 6 -0.2094 1.4495 -3.5573 19 16 -1.4772 2.5896 -3.1125 20 7 -1.2096 3.9799 -3.9714 21 8 -2.6957 2.0450 -3.6001 22 8 -1.2630 2.9146 -1.7459 23 6 0.9737 1.4180 -2.8427 24 1 -1.0500 0.0001 -0.0002 25 1 3.0097 -0.6681 0.7801 26 1 3.0088 1.0110 0.1893 27 1 1.6086 -3.1356 0.7645 28 1 4.0702 0.1768 -3.0697 29 1 3.4715 1.4843 -2.0207 30 1 2.5562 -1.0389 -4.5271 31 1 0.4484 -0.9840 -5.7983 32 1 -1.3234 0.6091 -5.1766 33 1 -0.4561 4.0368 -4.5797 34 1 -1.8062 4.7374 -3.8662 35 1 1.1195 2.0897 -2.0096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897163955.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:24 Heat of formation + Delta-G solvation = 37.421493 kcal Electronic energy + Delta-G solvation = -21679.273825 eV Core-core repulsion = 18386.089874 eV Total energy + Delta-G solvation = -3293.183950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -38.96527 -36.91754 -36.02772 -35.60003 -33.17133 -32.27030 -31.54320 -30.78611 -30.07628 -26.27705 -25.71085 -22.91075 -22.31260 -20.84026 -19.26750 -17.83274 -17.43244 -17.22581 -16.42368 -16.31323 -15.63836 -15.31296 -14.97555 -14.56689 -13.96342 -13.79324 -13.35578 -13.24574 -12.49301 -12.41812 -12.02189 -11.87302 -11.85519 -11.72730 -11.48521 -11.47217 -11.00290 -10.92865 -10.74245 -10.47873 -10.35620 -10.30401 -10.03415 -8.96762 -8.95122 -8.88556 -8.42068 -8.20108 -7.07203 -5.84617 -3.32970 0.59551 1.22301 1.74639 3.29195 3.31537 3.37055 3.39435 3.70655 4.03787 4.30302 4.45412 4.57820 4.76369 5.20616 5.23634 5.31623 5.50068 5.65703 5.70797 5.83592 5.88387 5.96290 5.96513 6.28142 6.33660 6.39098 6.49238 6.68019 6.75057 6.98621 7.05431 7.24610 7.29694 7.53487 7.64317 8.21546 9.02552 9.32231 9.65475 10.12272 11.16168 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.022883 B = 0.005355 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.320405 B = 5227.811691 C = 5595.143895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.100 4.100 3 C 0.269 3.731 4 N -0.575 5.575 5 C -0.266 4.266 6 H 0.075 0.925 7 C 0.007 3.993 8 N -0.884 5.884 9 Si 0.907 3.093 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.174 3.826 14 C -0.100 4.100 15 C -0.043 4.043 16 C -0.144 4.144 17 C -0.042 4.042 18 C -0.673 4.673 19 S 2.695 3.305 20 N -1.254 6.254 21 O -0.974 6.974 22 O -0.958 6.958 23 C -0.002 4.002 24 H 0.185 0.815 25 H 0.099 0.901 26 H 0.036 0.964 27 H 0.257 0.743 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.415 0.585 34 H 0.416 0.584 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 11.140 -9.556 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.103 4.103 3 C 0.144 3.856 4 N -0.293 5.293 5 C -0.395 4.395 6 H 0.093 0.907 7 C -0.194 4.194 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.206 1.206 13 C 0.048 3.952 14 C -0.105 4.105 15 C -0.063 4.063 16 C -0.164 4.164 17 C -0.062 4.062 18 C -0.763 4.763 19 S 2.787 3.213 20 N -0.927 5.927 21 O -0.963 6.963 22 O -0.948 6.948 23 C -0.022 4.022 24 H 0.203 0.797 25 H 0.117 0.883 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.242 0.758 34 H 0.245 0.755 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.169 10.679 -8.656 13.917 hybrid contribution 0.316 -1.278 -0.575 1.437 sum -1.854 9.401 -9.232 13.305 Atomic orbital electron populations 1.24093 0.95244 1.07512 1.03774 1.23983 0.95017 0.94298 0.97024 1.17858 0.83090 0.95806 0.88861 1.44359 1.73860 1.06430 1.04616 1.19219 1.22371 0.82534 1.15405 0.90719 1.25112 0.96234 0.98048 0.99982 1.70052 1.23194 1.33364 1.25948 0.86243 0.78276 0.83935 0.77825 1.21204 1.21750 1.20590 1.20126 0.91330 0.94141 0.89628 1.21298 1.00337 0.94412 0.94462 1.21334 0.96695 0.95299 0.92934 1.21163 0.94338 0.99685 1.01168 1.20671 0.98201 0.93485 0.93825 1.30126 1.16093 1.19946 1.10132 1.01583 0.73537 0.72832 0.73386 1.53176 1.42729 1.33505 1.63297 1.93565 1.43282 1.78377 1.81078 1.93619 1.85527 1.83243 1.32367 1.20731 0.90378 0.96401 0.94690 0.79732 0.88312 0.94659 0.93234 0.92017 0.92803 0.85689 0.85955 0.85213 0.75829 0.75519 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.00 18.98 29.55 0.56 -6.44 16 2 C -0.10 -2.48 10.12 -37.12 -0.38 -2.85 16 3 C 0.27 6.26 5.45 -6.83 -0.04 6.22 16 4 N -0.57 -13.26 2.49 -177.95 -0.44 -13.70 16 5 C -0.27 -6.72 9.67 -15.06 -0.15 -6.87 16 6 H 0.08 1.82 7.85 -52.49 -0.41 1.41 16 7 C 0.01 0.17 5.03 -17.43 -0.09 0.08 16 8 N -0.88 -24.64 9.15 55.49 0.51 -24.13 16 9 Si 0.91 20.97 29.57 -169.99 -5.03 15.94 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.17 3.27 5.82 -5.19 -0.03 3.24 16 14 C -0.10 -1.85 5.22 -104.62 -0.55 -2.39 16 15 C -0.04 -0.75 9.70 -39.58 -0.38 -1.13 16 16 C -0.14 -2.24 10.05 -39.58 -0.40 -2.64 16 17 C -0.04 -0.64 9.52 -39.58 -0.38 -1.02 16 18 C -0.67 -10.82 5.94 -39.59 -0.24 -11.05 16 19 S 2.70 39.09 6.28 -107.50 -0.68 38.41 16 20 N -1.25 -11.37 9.55 60.35 0.58 -10.80 16 21 O -0.97 -16.64 17.28 -57.17 -0.99 -17.63 16 22 O -0.96 -17.19 17.28 -57.17 -0.99 -18.18 16 23 C 0.00 -0.03 7.82 -39.58 -0.31 -0.34 16 24 H 0.19 4.11 7.80 -54.09 -0.42 3.69 16 25 H 0.10 2.51 6.48 -51.93 -0.34 2.17 16 26 H 0.04 0.72 7.98 -51.92 -0.41 0.30 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.06 1.07 7.97 -51.93 -0.41 0.65 16 29 H 0.05 0.89 7.89 -51.93 -0.41 0.48 16 30 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 33 H 0.42 2.77 8.92 -34.47 -0.31 2.46 16 34 H 0.42 2.88 8.96 -34.46 -0.31 2.58 16 35 H 0.13 2.32 7.61 -52.49 -0.40 1.92 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -34.18 319.77 -8.39 -42.57 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.80 Total: 7.89 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -2.36 Total: -25.19 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.64 Total: -48.63 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.98 Total: -35.81 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Atomic # 16 Polarization: 39.09 SS G_CDS: -0.68 Total: 38.41 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.18 -8.39 -42.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163955.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.989 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds