Wall clock time and date at job start Tue Mar 31 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46822 * 239.83146 * 3 2 1 5 5 C 1.36942 * 119.99484 * 263.65049 * 4 3 2 6 6 H 1.08005 * 119.99634 * 199.60245 * 5 4 3 7 7 C 1.38805 * 120.00425 * 19.60363 * 5 4 3 8 8 N 1.31628 * 120.00025 * 22.15988 * 7 5 4 9 9 Si 1.86795 * 120.00305 * 202.15906 * 7 5 4 10 10 H 1.48503 * 109.47139 * 90.00149 * 9 7 5 11 11 H 1.48495 * 109.47487 * 210.00106 * 9 7 5 12 12 H 1.48500 * 109.47144 * 330.00150 * 9 7 5 13 13 C 1.46496 * 120.00275 * 83.92963 * 4 3 2 14 14 C 1.50699 * 109.47045 * 89.99492 * 13 4 3 15 15 C 1.38234 * 120.00368 * 269.72977 * 14 13 4 16 16 C 1.38232 * 119.99982 * 179.76909 * 15 14 13 17 17 C 1.38235 * 120.00368 * 0.50425 * 16 15 14 18 18 S 1.76198 * 120.00287 * 179.72879 * 17 16 15 19 19 N 1.65601 * 107.21436 * 270.01870 * 18 17 16 20 20 O 1.42094 * 106.40181 * 23.55773 * 18 17 16 21 21 O 1.42100 * 106.40239 * 156.48020 * 18 17 16 22 22 C 1.38244 * 119.99671 * 359.74778 * 17 16 15 23 23 C 1.38228 * 119.99845 * 0.02562 * 22 17 16 24 24 H 4.40636 * 5.51459 * 180.02562 * 4 1 2 25 25 H 1.08996 * 109.46484 * 119.82895 * 3 2 1 26 26 H 1.09003 * 109.47235 * 359.82876 * 3 2 1 27 27 H 0.96998 * 120.00292 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47137 * 209.99648 * 13 4 3 29 29 H 1.09003 * 109.46840 * 329.99883 * 13 4 3 30 30 H 1.08004 * 119.99656 * 359.97438 * 15 14 13 31 31 H 1.08004 * 120.00211 * 180.22809 * 16 15 14 32 32 H 0.97011 * 119.99755 * 149.99970 * 19 18 17 33 33 H 0.96999 * 120.00832 * 330.00014 * 19 18 17 34 34 H 1.07997 * 119.99544 * 179.97438 * 22 17 16 35 35 H 1.08001 * 120.00305 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.6950 1.1941 5 6 3.4852 2.0166 1.1220 6 1 4.1262 2.4470 1.8773 7 6 3.0175 2.8032 0.0784 8 7 1.9321 2.4496 -0.5770 9 14 3.9282 4.3635 -0.3962 10 1 4.9522 4.0460 -1.4237 11 1 2.9651 5.3512 -0.9459 12 1 4.5914 4.9340 0.8038 13 6 3.2520 -0.0261 2.4639 14 6 4.6246 -0.6393 2.5676 15 6 4.8480 -1.9181 2.0926 16 6 6.1083 -2.4788 2.1835 17 6 7.1427 -1.7647 2.7588 18 16 8.7474 -2.4821 2.8810 19 7 8.8185 -3.2796 4.3307 20 8 8.8193 -3.4788 1.8708 21 8 9.6645 -1.4006 2.9725 22 6 6.9180 -0.4878 3.2385 23 6 5.6589 0.0746 3.1434 24 1 -1.0501 -0.0003 -0.0001 25 1 3.0090 0.5120 -0.8915 26 1 3.0099 -1.0269 0.0031 27 1 1.6050 2.9994 -1.3061 28 1 3.1004 0.6675 3.2910 29 1 2.4985 -0.8126 2.5064 30 1 4.0387 -2.4779 1.6475 31 1 6.2838 -3.4765 1.8090 32 1 9.3814 -4.0640 4.4256 33 1 8.2975 -2.9624 5.0849 34 1 7.7261 0.0699 3.6883 35 1 5.4832 1.0720 3.5186 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897164285.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:31 Heat of formation + Delta-G solvation = 32.617994 kcal Electronic energy + Delta-G solvation = -20841.209959 eV Core-core repulsion = 17547.817713 eV Total energy + Delta-G solvation = -3293.392246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.082 amu Computer time = 4.92 seconds Orbital eigenvalues (eV) -39.16711 -37.15647 -36.13481 -35.83004 -33.33495 -32.50808 -31.66054 -30.84116 -30.19678 -26.59469 -25.86183 -22.65892 -22.61144 -20.82868 -19.55961 -18.31867 -17.53622 -17.44589 -16.67576 -16.37282 -15.61753 -15.28247 -15.04980 -14.69357 -14.13878 -13.81351 -13.53834 -13.32121 -13.05875 -12.68597 -12.22674 -12.10468 -11.98808 -11.88755 -11.59977 -11.51787 -11.17127 -10.90333 -10.82107 -10.67909 -10.48136 -10.32045 -10.11208 -9.14291 -8.97178 -8.82653 -8.74279 -8.54463 -7.13768 -5.89198 -3.33922 0.40453 1.01124 1.54445 3.12109 3.32768 3.40655 3.41357 3.53334 3.84072 4.14303 4.29487 4.46374 4.52079 4.98687 5.03988 5.16166 5.36881 5.53539 5.59001 5.61106 5.74813 5.80444 5.90582 5.95907 6.21252 6.26822 6.41204 6.43208 6.61948 6.85511 6.89719 7.07924 7.10794 7.32107 7.65690 8.15922 8.97541 9.10326 9.63540 10.08624 11.13857 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.004271 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.082518 B = 6554.428059 C = 7367.224346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.099 4.099 3 C 0.268 3.732 4 N -0.575 5.575 5 C -0.274 4.274 6 H 0.075 0.925 7 C 0.010 3.990 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.279 1.279 13 C 0.170 3.830 14 C -0.016 4.016 15 C -0.137 4.137 16 C -0.021 4.021 17 C -0.691 4.691 18 S 2.703 3.297 19 N -1.251 6.251 20 O -0.969 6.969 21 O -0.967 6.967 22 C -0.026 4.026 23 C -0.124 4.124 24 H 0.191 0.809 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.256 0.744 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.417 0.583 33 H 0.416 0.584 34 H 0.135 0.865 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -11.473 9.952 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.102 4.102 3 C 0.143 3.857 4 N -0.294 5.294 5 C -0.402 4.402 6 H 0.093 0.907 7 C -0.190 4.190 8 N -0.525 5.525 9 Si 0.729 3.271 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.204 1.204 13 C 0.043 3.957 14 C -0.020 4.020 15 C -0.157 4.157 16 C -0.041 4.041 17 C -0.781 4.781 18 S 2.793 3.207 19 N -0.924 5.924 20 O -0.959 6.959 21 O -0.956 6.956 22 C -0.046 4.046 23 C -0.143 4.143 24 H 0.208 0.792 25 H 0.111 0.889 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.247 0.753 33 H 0.243 0.757 34 H 0.152 0.848 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.685 -11.185 8.989 16.774 hybrid contribution -0.641 1.055 0.134 1.242 sum 8.044 -10.130 9.123 15.829 Atomic orbital electron populations 1.24201 0.95341 1.07570 1.04238 1.24178 0.95204 0.94116 0.96718 1.17732 0.82965 0.93396 0.91649 1.43941 1.74292 1.07940 1.03207 1.19150 1.24987 0.85157 1.10939 0.90687 1.24932 0.95919 0.97994 1.00188 1.70137 1.19074 1.39411 1.23853 0.86337 0.79300 0.82672 0.78747 1.21259 1.21802 1.20390 1.19959 0.89430 0.95676 0.90665 1.21610 0.99369 0.92316 0.88703 1.21206 0.96983 0.95987 1.01495 1.20818 0.91871 0.98680 0.92692 1.30257 1.22091 1.07159 1.18554 1.01365 0.73693 0.73286 0.72326 1.53198 1.62082 1.46186 1.30920 1.93575 1.86685 1.59507 1.56147 1.93596 1.60686 1.55503 1.85860 1.20896 0.97513 0.92273 0.93871 1.21223 0.92327 1.00211 1.00583 0.79171 0.88879 0.94448 0.93364 0.91647 0.92750 0.85436 0.84801 0.75317 0.75681 0.84750 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.49 19.25 29.55 0.57 -5.92 16 2 C -0.10 -2.33 11.51 -37.12 -0.43 -2.76 16 3 C 0.27 6.09 5.41 -6.83 -0.04 6.06 16 4 N -0.58 -13.21 2.47 -177.95 -0.44 -13.65 16 5 C -0.27 -6.99 9.63 -15.06 -0.14 -7.13 16 6 H 0.08 1.87 7.92 -52.48 -0.42 1.45 16 7 C 0.01 0.26 4.82 -17.43 -0.08 0.18 16 8 N -0.88 -24.42 9.62 55.49 0.53 -23.88 16 9 Si 0.90 21.13 29.61 -169.99 -5.03 16.10 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 C 0.17 3.15 5.80 -5.20 -0.03 3.12 16 14 C -0.02 -0.26 5.46 -104.62 -0.57 -0.84 16 15 C -0.14 -2.02 9.70 -39.59 -0.38 -2.41 16 16 C -0.02 -0.28 9.52 -39.58 -0.38 -0.66 16 17 C -0.69 -9.08 5.97 -39.58 -0.24 -9.32 16 18 S 2.70 31.34 6.28 -107.50 -0.68 30.66 16 19 N -1.25 -8.57 9.52 60.35 0.57 -8.00 16 20 O -0.97 -13.99 17.28 -57.17 -0.99 -14.98 16 21 O -0.97 -14.34 17.28 -57.17 -0.99 -15.33 16 22 C -0.03 -0.36 9.52 -39.58 -0.38 -0.74 16 23 C -0.12 -1.92 9.70 -39.58 -0.38 -2.30 16 24 H 0.19 3.50 7.80 -54.09 -0.42 3.08 16 25 H 0.09 2.35 6.58 -51.93 -0.34 2.01 16 26 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.07 1.20 7.98 -51.93 -0.41 0.78 16 29 H 0.05 0.95 8.01 -51.93 -0.42 0.53 16 30 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.13 1.54 7.62 -52.48 -0.40 1.14 16 32 H 0.42 2.07 8.96 -34.47 -0.31 1.76 16 33 H 0.42 1.97 8.96 -34.48 -0.31 1.66 16 34 H 0.13 1.60 7.62 -52.49 -0.40 1.20 16 35 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -34.02 323.72 -8.45 -42.47 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.83 Total: 4.43 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -2.48 Total: -22.71 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.67 Total: -45.53 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.98 Total: -30.30 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 31.34 SS G_CDS: -0.68 Total: 30.66 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.02 -8.45 -42.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164285.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.086 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.92 seconds