Wall clock time and date at job start Tue Mar 31 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47443 * 111.00227 * 2 1 4 4 C 1.54312 * 107.23612 * 236.74273 * 3 2 1 5 5 C 1.55142 * 103.17714 * 337.62814 * 4 3 2 6 6 H 1.08996 * 110.99420 * 277.65160 * 5 4 3 7 7 C 1.50700 * 110.99048 * 153.83199 * 5 4 3 8 8 O 1.21280 * 120.00008 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00050 * 180.02562 * 7 5 4 10 10 C 1.46748 * 125.32871 * 359.68591 * 9 7 5 11 11 C 1.54108 * 106.62780 * 161.57165 * 10 9 7 12 12 H 1.08994 * 113.48658 * 151.38289 * 11 10 9 13 13 C 1.53968 * 109.45620 * 278.65762 * 11 10 9 14 14 N 1.46778 * 106.62598 * 138.17797 * 13 11 10 15 15 C 1.36941 * 125.33829 * 161.48304 * 14 13 11 16 16 H 1.07998 * 119.99705 * 359.97438 * 15 14 13 17 17 C 1.38807 * 119.99883 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00159 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99770 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47169 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47164 * 120.00186 * 19 17 15 22 22 H 1.48502 * 109.46926 * 239.99623 * 19 17 15 23 23 C 1.46671 * 109.32248 * 341.48186 * 14 13 11 24 24 C 1.53724 * 107.94152 * 0.54693 * 23 14 13 25 25 H 1.08999 * 113.05509 * 140.00658 * 24 23 14 26 26 C 1.46644 * 125.33052 * 180.02562 * 9 7 5 27 27 C 1.47844 * 110.99982 * 239.15844 * 2 1 3 28 28 H 1.09002 * 109.47062 * 59.87336 * 1 2 3 29 29 H 1.08998 * 109.47146 * 179.86779 * 1 2 3 30 30 H 1.08995 * 109.47111 * 299.87499 * 1 2 3 31 31 H 1.08997 * 109.88254 * 117.33308 * 3 2 1 32 32 H 1.09003 * 109.88840 * 356.15438 * 3 2 1 33 33 H 1.09002 * 110.70596 * 96.10119 * 4 3 2 34 34 H 1.09005 * 110.70742 * 219.16269 * 4 3 2 35 35 H 1.08999 * 110.00806 * 281.00169 * 10 9 7 36 36 H 1.08996 * 110.00490 * 42.37283 * 10 9 7 37 37 H 1.08998 * 110.02543 * 257.46574 * 13 11 10 38 38 H 1.08995 * 110.03136 * 18.83593 * 13 11 10 39 39 H 0.96998 * 120.00038 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.76842 * 240.92878 * 23 14 13 41 41 H 1.08997 * 109.77034 * 120.17019 * 23 14 13 42 42 H 1.08998 * 109.75808 * 300.44780 * 26 9 7 43 43 H 1.09003 * 109.76227 * 61.15835 * 26 9 7 44 44 H 1.08999 * 110.37744 * 265.19940 * 27 2 1 45 45 H 1.09007 * 110.37325 * 27.42750 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5137 -1.2324 5 6 3.3089 0.0459 -1.5457 6 1 4.1343 -0.2808 -0.9133 7 6 3.6498 -0.1221 -3.0040 8 8 3.5935 0.8297 -3.7535 9 7 4.0171 -1.3302 -3.4753 10 6 4.1305 -2.5548 -2.6747 11 6 4.1091 -3.7338 -3.6669 12 1 4.6545 -4.6088 -3.3135 13 6 2.6536 -4.0490 -4.0576 14 7 2.6533 -4.3077 -5.5024 15 6 1.6661 -4.9624 -6.1896 16 1 0.7993 -5.3358 -5.6647 17 6 1.7797 -5.1460 -7.5608 18 7 2.8364 -4.6913 -8.2004 19 14 0.4328 -6.0384 -8.4983 20 1 -0.6389 -6.4477 -7.5554 21 1 -0.1343 -5.1340 -9.5307 22 1 1.0012 -7.2434 -9.1542 23 6 3.8760 -3.7551 -6.0947 24 6 4.7052 -3.1225 -4.9654 25 1 5.7746 -3.3074 -5.0659 26 6 4.3729 -1.6251 -4.8670 27 6 1.9988 -0.7076 -1.1851 28 1 -0.3633 0.5158 -0.8889 29 1 -0.3633 -1.0276 -0.0024 30 1 -0.3633 0.5119 0.8911 31 1 2.5697 1.5539 0.9106 32 1 1.1756 2.0892 -0.0687 33 1 2.3744 1.9547 -2.0694 34 1 3.7986 2.1059 -0.9913 35 1 5.0669 -2.5503 -2.1169 36 1 3.2873 -2.6309 -1.9883 37 1 2.3055 -4.9312 -3.5204 38 1 2.0131 -3.1969 -3.8302 39 1 2.9156 -4.8193 -9.1587 40 1 3.6176 -2.9955 -6.8324 41 1 4.4480 -4.5518 -6.5703 42 1 3.5322 -1.3906 -5.5199 43 1 5.2416 -1.0346 -5.1584 44 1 2.2147 -1.7477 -0.9410 45 1 1.2880 -0.6517 -2.0096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049212251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:10 Heat of formation + Delta-G solvation = 6.131970 kcal Electronic energy + Delta-G solvation = -24816.367287 eV Core-core repulsion = 21448.458501 eV Total energy + Delta-G solvation = -3367.908786 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55399 -39.05539 -37.69461 -35.01131 -32.53392 -32.08356 -30.42906 -29.68832 -29.06016 -26.24955 -25.51861 -25.35962 -23.34760 -21.65983 -21.10278 -20.16267 -19.40383 -18.99143 -17.44604 -16.75870 -16.06594 -15.78095 -15.74142 -14.75522 -14.69753 -14.37352 -13.93803 -13.68066 -13.63207 -13.46987 -13.09307 -12.84839 -12.66669 -12.13513 -11.91903 -11.76979 -11.74061 -11.71424 -11.57182 -11.39312 -11.24195 -10.92002 -10.89086 -10.83591 -10.34199 -10.11454 -10.02561 -9.92713 -9.69346 -9.67898 -8.63785 -8.58113 -8.36414 -6.85732 -5.74766 -3.08284 2.70518 3.11963 3.38307 3.43902 3.46344 3.81896 4.30079 4.46267 4.47036 4.61406 4.76181 4.93082 5.05816 5.10808 5.14828 5.22942 5.26652 5.27882 5.44005 5.45650 5.50236 5.55034 5.66866 5.68072 5.71594 5.75596 5.78716 5.88517 5.92405 6.05430 6.12518 6.25735 6.32164 6.52069 6.59351 6.67405 6.67666 6.78474 6.81119 7.51972 7.54185 7.71564 7.78536 8.23721 8.29576 9.19726 9.80176 10.43811 11.36948 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.004149 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.153502 B = 6746.992617 C = 7347.483902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.533 5.533 3 C 0.040 3.960 4 C -0.123 4.123 5 C -0.115 4.115 6 H 0.108 0.892 7 C 0.535 3.465 8 O -0.544 6.544 9 N -0.606 5.606 10 C 0.106 3.894 11 C -0.110 4.110 12 H 0.099 0.901 13 C 0.145 3.855 14 N -0.602 5.602 15 C -0.229 4.229 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.187 3.813 24 C -0.123 4.123 25 H 0.088 0.912 26 C 0.118 3.882 27 C 0.052 3.948 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.016 0.984 39 H 0.252 0.748 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 7.888 16.696 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.088 4.088 4 C -0.162 4.162 5 C -0.137 4.137 6 H 0.126 0.874 7 C 0.322 3.678 8 O -0.421 6.421 9 N -0.338 5.338 10 C -0.018 4.018 11 C -0.129 4.129 12 H 0.117 0.883 13 C 0.019 3.981 14 N -0.328 5.328 15 C -0.357 4.357 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.062 3.938 24 C -0.142 4.142 25 H 0.107 0.893 26 C -0.004 4.004 27 C -0.076 4.076 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.109 0.891 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.334 8.153 16.550 18.596 hybrid contribution -0.916 -0.136 -1.316 1.609 sum 1.417 8.017 15.234 17.274 Atomic orbital electron populations 1.22567 0.87342 1.02429 1.00713 1.63629 1.08291 1.14253 1.39483 1.22892 0.98044 0.89437 0.98405 1.22662 1.00358 0.94860 0.98276 1.22475 0.99636 0.98017 0.93559 0.87443 1.19921 0.76876 0.81439 0.89541 1.90690 1.53373 1.38901 1.59164 1.48259 1.66467 1.08291 1.10827 1.22116 1.01267 0.84092 0.94304 1.22966 0.99068 0.96441 0.94464 0.88251 1.21233 0.92234 0.97466 0.87189 1.44225 1.21141 1.66409 1.01072 1.19087 0.98061 1.28538 0.90064 0.90376 1.24794 0.98020 1.01054 0.96444 1.69959 1.28221 1.50631 1.08104 0.86044 0.80879 0.78958 0.79875 1.20517 1.21742 1.21710 1.21036 0.85906 0.96720 0.90148 1.23139 1.00374 0.92988 0.97737 0.89345 1.21982 1.00427 0.95893 0.82068 1.23166 0.94021 0.98715 0.91668 0.95238 0.91087 0.91254 0.90230 0.92393 0.89965 0.90262 0.91767 0.90568 0.94678 0.96623 0.93734 0.93301 0.93317 0.90702 0.92235 0.89061 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.12 60.06 0.55 0.72 16 2 N -0.53 -5.65 5.44 -239.21 -1.30 -6.95 16 3 C 0.04 0.38 6.90 -2.84 -0.02 0.36 16 4 C -0.12 -1.36 6.05 -24.91 -0.15 -1.51 16 5 C -0.11 -1.37 2.78 -89.38 -0.25 -1.62 16 6 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 7 C 0.53 8.45 7.20 -10.99 -0.08 8.37 16 8 O -0.54 -10.59 16.02 5.56 0.09 -10.50 16 9 N -0.61 -9.43 3.30 -172.27 -0.57 -10.00 16 10 C 0.11 1.36 5.73 -3.33 -0.02 1.34 16 11 C -0.11 -1.71 4.16 -88.26 -0.37 -2.08 16 12 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 13 C 0.15 2.85 6.49 -3.39 -0.02 2.83 16 14 N -0.60 -14.95 3.38 -171.84 -0.58 -15.53 16 15 C -0.23 -6.30 10.25 -15.06 -0.15 -6.46 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 18 N -0.92 -26.72 10.25 55.49 0.57 -26.15 16 19 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 C 0.19 4.37 4.77 -3.57 -0.02 4.35 16 24 C -0.12 -2.15 4.01 -88.61 -0.36 -2.51 16 25 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 26 C 0.12 2.09 6.22 -3.60 -0.02 2.07 16 27 C 0.05 0.60 5.55 -2.04 -0.01 0.59 16 28 H 0.03 0.29 8.11 -51.93 -0.42 -0.13 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.51 7.58 -51.93 -0.39 0.12 16 33 H 0.08 1.08 7.39 -51.93 -0.38 0.69 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.89 5.10 -51.93 -0.27 0.62 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.02 0.33 7.72 -51.93 -0.40 -0.08 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.05 1.29 6.73 -51.93 -0.35 0.94 16 41 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 42 H 0.07 1.57 7.29 -51.93 -0.38 1.19 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 0.98 6.16 -51.93 -0.32 0.66 16 45 H 0.05 0.73 7.68 -51.93 -0.40 0.33 16 LS Contribution 342.70 15.07 5.16 5.16 Total: -1.00 -31.85 342.70 -10.14 -41.98 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.47 Total: -1.15 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.02 Total: 6.16 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -1.88 Total: -58.63 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.85 -10.14 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049212251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.115 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds