Wall clock time and date at job start Tue Mar 31 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47443 * 111.00227 * 2 1 4 4 C 1.54312 * 107.23612 * 236.74273 * 3 2 1 5 5 C 1.55142 * 103.17714 * 337.62814 * 4 3 2 6 6 H 1.08996 * 110.99420 * 277.65160 * 5 4 3 7 7 C 1.50700 * 110.99048 * 153.83199 * 5 4 3 8 8 O 1.21280 * 120.00008 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00050 * 180.02562 * 7 5 4 10 10 C 1.46748 * 125.32871 * 359.68591 * 9 7 5 11 11 C 1.54108 * 106.62780 * 161.57165 * 10 9 7 12 12 H 1.08994 * 113.48658 * 151.38289 * 11 10 9 13 13 C 1.53968 * 109.45620 * 278.65762 * 11 10 9 14 14 N 1.46778 * 106.62598 * 138.17797 * 13 11 10 15 15 C 1.36941 * 125.33829 * 161.48304 * 14 13 11 16 16 H 1.07998 * 119.99705 * 359.97438 * 15 14 13 17 17 C 1.38807 * 119.99883 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00159 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99770 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47169 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47164 * 120.00186 * 19 17 15 22 22 H 1.48502 * 109.46926 * 239.99623 * 19 17 15 23 23 C 1.46671 * 109.32248 * 341.48186 * 14 13 11 24 24 C 1.53724 * 107.94152 * 0.54693 * 23 14 13 25 25 H 1.08999 * 113.05509 * 140.00658 * 24 23 14 26 26 C 1.46644 * 125.33052 * 180.02562 * 9 7 5 27 27 C 1.47844 * 110.99982 * 239.15844 * 2 1 3 28 28 H 1.09002 * 109.47062 * 59.87336 * 1 2 3 29 29 H 1.08998 * 109.47146 * 179.86779 * 1 2 3 30 30 H 1.08995 * 109.47111 * 299.87499 * 1 2 3 31 31 H 1.08997 * 109.88254 * 117.33308 * 3 2 1 32 32 H 1.09003 * 109.88840 * 356.15438 * 3 2 1 33 33 H 1.09002 * 110.70596 * 96.10119 * 4 3 2 34 34 H 1.09005 * 110.70742 * 219.16269 * 4 3 2 35 35 H 1.08999 * 110.00806 * 281.00169 * 10 9 7 36 36 H 1.08996 * 110.00490 * 42.37283 * 10 9 7 37 37 H 1.08998 * 110.02543 * 257.46574 * 13 11 10 38 38 H 1.08995 * 110.03136 * 18.83593 * 13 11 10 39 39 H 0.96998 * 120.00038 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.76842 * 240.92878 * 23 14 13 41 41 H 1.08997 * 109.77034 * 120.17019 * 23 14 13 42 42 H 1.08998 * 109.75808 * 300.44780 * 26 9 7 43 43 H 1.09003 * 109.76227 * 61.15835 * 26 9 7 44 44 H 1.08999 * 110.37744 * 265.19940 * 27 2 1 45 45 H 1.09007 * 110.37325 * 27.42750 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5137 -1.2324 5 6 3.3089 0.0459 -1.5457 6 1 4.1343 -0.2808 -0.9133 7 6 3.6498 -0.1221 -3.0040 8 8 3.5935 0.8297 -3.7535 9 7 4.0171 -1.3302 -3.4753 10 6 4.1305 -2.5548 -2.6747 11 6 4.1091 -3.7338 -3.6669 12 1 4.6545 -4.6088 -3.3135 13 6 2.6536 -4.0490 -4.0576 14 7 2.6533 -4.3077 -5.5024 15 6 1.6661 -4.9624 -6.1896 16 1 0.7993 -5.3358 -5.6647 17 6 1.7797 -5.1460 -7.5608 18 7 2.8364 -4.6913 -8.2004 19 14 0.4328 -6.0384 -8.4983 20 1 -0.6389 -6.4477 -7.5554 21 1 -0.1343 -5.1340 -9.5307 22 1 1.0012 -7.2434 -9.1542 23 6 3.8760 -3.7551 -6.0947 24 6 4.7052 -3.1225 -4.9654 25 1 5.7746 -3.3074 -5.0659 26 6 4.3729 -1.6251 -4.8670 27 6 1.9988 -0.7076 -1.1851 28 1 -0.3633 0.5158 -0.8889 29 1 -0.3633 -1.0276 -0.0024 30 1 -0.3633 0.5119 0.8911 31 1 2.5697 1.5539 0.9106 32 1 1.1756 2.0892 -0.0687 33 1 2.3744 1.9547 -2.0694 34 1 3.7986 2.1059 -0.9913 35 1 5.0669 -2.5503 -2.1169 36 1 3.2873 -2.6309 -1.9883 37 1 2.3055 -4.9312 -3.5204 38 1 2.0131 -3.1969 -3.8302 39 1 2.9156 -4.8193 -9.1587 40 1 3.6176 -2.9955 -6.8324 41 1 4.4480 -4.5518 -6.5703 42 1 3.5322 -1.3906 -5.5199 43 1 5.2416 -1.0346 -5.1584 44 1 2.2147 -1.7477 -0.9410 45 1 1.2880 -0.6517 -2.0096 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049212251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:09 Heat of formation + Delta-G solvation = -16.231783 kcal Electronic energy + Delta-G solvation = -24817.337052 eV Core-core repulsion = 21448.458501 eV Total energy + Delta-G solvation = -3368.878551 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79317 -40.24958 -38.88687 -36.65950 -34.14174 -33.24676 -31.86714 -31.27754 -30.08359 -27.54791 -27.09376 -26.63510 -24.78073 -22.82577 -22.00175 -21.77248 -20.85336 -20.18667 -18.92024 -18.34167 -17.12135 -17.01095 -16.92659 -16.71617 -15.87927 -15.52303 -15.42416 -14.96341 -14.72414 -14.55361 -14.48241 -14.04997 -13.88070 -13.63250 -13.49572 -13.31210 -13.16637 -12.78999 -12.71276 -12.61674 -12.57546 -12.33898 -12.18570 -11.98570 -11.88510 -11.73001 -11.62437 -11.58674 -11.44466 -10.99378 -10.72259 -9.67859 -9.38764 -8.89626 -7.87311 -5.22378 1.43921 1.44840 1.48691 1.54948 1.92995 2.47584 2.96122 3.30495 3.36641 3.41932 3.51760 3.61514 3.72710 3.89619 3.94024 4.15243 4.21844 4.24165 4.29517 4.33916 4.46058 4.47054 4.51067 4.55541 4.71350 4.77811 4.79728 4.85698 4.90440 4.93557 4.98591 5.01243 5.02133 5.15073 5.20560 5.27294 5.37428 5.46889 5.59956 5.76513 5.85190 5.99245 6.19695 6.49899 7.05734 7.10013 7.78593 8.39876 9.22966 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.004149 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.153502 B = 6746.992617 C = 7347.483902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.533 5.533 3 C 0.043 3.957 4 C -0.123 4.123 5 C -0.105 4.105 6 H 0.139 0.861 7 C 0.529 3.471 8 O -0.590 6.590 9 N -0.607 5.607 10 C 0.109 3.891 11 C -0.095 4.095 12 H 0.131 0.869 13 C 0.138 3.862 14 N -0.625 5.625 15 C -0.242 4.242 16 H 0.082 0.918 17 C -0.065 4.065 18 N -0.951 5.951 19 Si 0.976 3.024 20 H -0.265 1.265 21 H -0.296 1.296 22 H -0.289 1.289 23 C 0.197 3.803 24 C -0.109 4.109 25 H 0.119 0.881 26 C 0.126 3.874 27 C 0.055 3.945 28 H 0.018 0.982 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.007 0.993 39 H 0.246 0.754 40 H 0.003 0.997 41 H 0.016 0.984 42 H 0.027 0.973 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 7.358 20.257 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.257 5.257 3 C -0.084 4.084 4 C -0.162 4.162 5 C -0.127 4.127 6 H 0.157 0.843 7 C 0.319 3.681 8 O -0.471 6.471 9 N -0.339 5.339 10 C -0.012 4.012 11 C -0.114 4.114 12 H 0.149 0.851 13 C 0.013 3.987 14 N -0.351 5.351 15 C -0.371 4.371 16 H 0.100 0.900 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.805 3.195 20 H -0.189 1.189 21 H -0.224 1.224 22 H -0.216 1.216 23 C 0.071 3.929 24 C -0.129 4.129 25 H 0.137 0.863 26 C 0.002 3.998 27 C -0.073 4.073 28 H 0.036 0.964 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.055 0.945 40 H 0.021 0.979 41 H 0.034 0.966 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.124 0.876 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.955 7.605 20.175 21.762 hybrid contribution -1.176 0.064 -2.439 2.708 sum 1.779 7.669 17.736 19.405 Atomic orbital electron populations 1.22630 0.86815 1.02746 1.01048 1.63724 1.08848 1.14739 1.38361 1.22954 0.98093 0.89063 0.98295 1.22660 1.00995 0.94505 0.98006 1.22512 1.00715 0.98710 0.90739 0.84296 1.20696 0.75721 0.80708 0.90994 1.90670 1.55201 1.40506 1.60741 1.48360 1.66107 1.09379 1.10043 1.22324 1.04390 0.81143 0.93364 1.23000 0.95826 0.98620 0.93948 0.85124 1.21459 0.95328 0.97446 0.84440 1.44550 1.20971 1.66034 1.03526 1.19482 0.98867 1.28088 0.90686 0.89996 1.25624 1.00275 1.02418 0.97479 1.70189 1.29994 1.52028 1.07760 0.85043 0.78639 0.77471 0.78396 1.18910 1.22380 1.21580 1.20728 0.86060 0.94541 0.91539 1.22977 1.01031 0.92338 0.96548 0.86277 1.21678 0.98819 0.96184 0.83081 1.23140 0.93224 0.99659 0.91267 0.96360 0.90862 0.89463 0.88127 0.91902 0.92898 0.88825 0.87369 0.88715 0.93551 0.97480 0.94457 0.97915 0.96552 0.95453 0.91463 0.87634 0.95503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.12 127.69 1.16 1.43 16 2 N -0.53 -9.83 5.44 -910.71 -4.96 -14.79 16 3 C 0.04 0.71 6.90 86.64 0.60 1.30 16 4 C -0.12 -2.51 6.05 31.77 0.19 -2.32 16 5 C -0.11 -2.23 2.78 -9.99 -0.03 -2.26 16 6 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 7 C 0.53 16.22 7.20 87.66 0.63 16.85 16 8 O -0.59 -23.52 16.02 -3.03 -0.05 -23.57 16 9 N -0.61 -17.91 3.30 -817.32 -2.70 -20.61 16 10 C 0.11 2.36 5.73 86.71 0.50 2.85 16 11 C -0.09 -2.66 4.16 -9.26 -0.04 -2.70 16 12 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 13 C 0.14 5.29 6.49 86.65 0.56 5.85 16 14 N -0.62 -31.69 3.38 -697.59 -2.36 -34.05 16 15 C -0.24 -13.61 10.25 84.03 0.86 -12.75 16 16 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 17 C -0.06 -3.73 5.48 84.86 0.47 -3.26 16 18 N -0.95 -57.70 10.25 21.65 0.22 -57.48 16 19 Si 0.98 46.24 29.55 68.60 2.03 48.26 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 C 0.20 9.57 4.77 86.59 0.41 9.99 16 24 C -0.11 -3.74 4.01 -9.49 -0.04 -3.78 16 25 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 26 C 0.13 4.47 6.22 86.58 0.54 5.01 16 27 C 0.06 1.15 5.55 86.94 0.48 1.64 16 28 H 0.02 0.34 8.11 -2.39 -0.02 0.32 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 0.97 7.58 -2.39 -0.02 0.95 16 33 H 0.05 1.39 7.39 -2.39 -0.02 1.38 16 34 H 0.09 1.62 8.14 -2.38 -0.02 1.61 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.76 5.10 -2.39 -0.01 1.75 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 38 H 0.01 0.30 7.72 -2.39 -0.02 0.28 16 39 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.00 0.15 6.73 -2.39 -0.02 0.14 16 41 H 0.02 0.89 7.37 -2.39 -0.02 0.87 16 42 H 0.03 1.22 7.29 -2.39 -0.02 1.20 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.11 1.89 6.16 -2.39 -0.01 1.87 16 45 H 0.03 0.71 7.68 -2.38 -0.02 0.69 16 Total: -1.00 -74.50 342.70 -0.55 -75.05 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.96 Total: 9.33 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 6.30 Total: 17.86 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -9.79 Total: -126.93 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -74.50 -0.55 -75.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049212251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.816 kcal (2) G-P(sol) polarization free energy of solvation -74.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds